Project measure / variable:   JaxCC1   reaction_time_LD

ID, description, units MPD:89086   reaction_time_LD   latency to enter dark zone, 20 min test   [s]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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JaxCC1 - latency to enter dark zone, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means138.9   s 138.0   s
Median of the strain means134.2   s 90.78   s
SD of the strain means± 94.56 ± 118.3
Coefficient of variation (CV)0.6806 0.8567
Min–max range of strain means17.925   –   326.1   s 20.238   –   381.3   s
Mean sample size per strain6.7   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9709.2358 9709.2358 0.3582 0.5502
strain 16 2491828.4306 155739.2769 5.7458 < 0.0001
sex:strain 16 255873.5291 15992.0956 0.59 0.8896
Residuals 209 5664918.5876 27104.8736


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 58.94 49.709   8 17.575 0.8434 16.8, 146.8 -0.85
CC002/UncJ m 83.81 103.5   7 39.105 1.2344 0.6, 284.3 -0.46
CC003/UncJ f 58.06 98.68   5 44.132 1.6997 1.2, 233.3 -0.86
CC003/UncJ m 33.95 52.33   4 26.163 1.5413 3.9, 112.2 -0.88
CC004/TauUncJ f 39.66 79.22   5 35.427 1.9974 1.4, 181.3 -1.05
CC004/TauUncJ m 44.913 80.45   8 28.443 1.7912 1.1, 217.4 -0.79
CC006/TauUncJ f 17.925 19.53   4 9.765 1.0895 5.0, 46.8 -1.28
CC006/TauUncJ m 27.225 25.857   8 9.1417 0.9497 2.0, 70.1 -0.94
CC009/UncJ f 241.5 72.82   8 25.746 0.3015 170.1, 358.8 1.08
CC009/UncJ m 68.72 79.98   8 28.276 1.1637 1.4, 213.2 -0.59
CC010/GeniUncJ f 228.8 196.4   4 98.19 0.8584 26.3, 435.9 0.95
CC013/GeniUncJ f 129.8 121.3   8 42.884 0.9348 1.3, 373.3 -0.1
CC013/GeniUncJ m 184.2 120.9   4 60.47 0.6566 6.4, 262.2 0.39
CC017/UncJ f 146.9 94.92   6 38.753 0.6461 7.3, 288.6 0.08
CC017/UncJ m 90.78 50.75   5 22.695 0.559 1.2, 121.2 -0.4
CC018/UncJ f 37.388 46.869   8 16.571 1.2536 2.7, 123.8 -1.07
CC018/UncJ m 20.238 22.741   8 8.0401 1.1237 3.0, 69.2 -1.0
CC019/TauUncJ f 177.5 115.2   8 40.733 0.6489 5.9, 305.6 0.41
CC019/TauUncJ m 176.0 180.3   8 63.76 1.0247 2.0, 545.3 0.32
CC024/GeniUncJ f 138.7 132.8   7 50.19 0.9576 1.7, 341.5 0.0
CC024/GeniUncJ m 144.4 176.3   8 62.33 1.2211 3.2, 439.5 0.05
CC025/GeniUncJ f 251.0 287.2   6 117.3 1.1443 58.6, 822.0 1.19
CC025/GeniUncJ m 353.4 394.0   10 124.6 1.1149 9.2, 979.4 1.82
CC026/GeniUncJ f 19.438 29.196   8 10.322 1.5021 1.0, 89.9 -1.26
CC026/GeniUncJ m 20.788 21.693   8 7.6695 1.0435 1.6, 58.6 -0.99
CC032/GeniUncJ f 100.2 68.67   8 24.278 0.6853 17.9, 235.8 -0.41
CC032/GeniUncJ m 72.34 52.12   8 18.429 0.7206 10.9, 173.9 -0.56
CC040/TauUncJ f 71.63 77.31   8 27.334 1.0794 13.1, 247.3 -0.71
CC040/TauUncJ m 100.4 63.96   7 24.175 0.6373 16.9, 206.5 -0.32
CC041/TauUncJ f 326.1 391.4   6 159.8 1.2003 35.2, 1108.0 1.98
CC041/TauUncJ m 314.1 284.8   8 100.7 0.9066 20.3, 796.0 1.49
CC051/TauUncJ f 225.9 203.7   8 72.01 0.9017 1.3, 568.8 0.92
CC051/TauUncJ m 230.2 253.6   10 80.2 1.1017 23.3, 894.0 0.78
CC068/TauUncJ f 231.5 84.88   5 37.96 0.3666 136.9, 324.7 0.98
CC068/TauUncJ m 381.3 221.7   8 78.37 0.5814 152.2, 708.5 2.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 58.9375 58.2075 173.6865 -55.8115
CC002/UncJ m 83.8143 62.2264 206.4861 -38.8576
CC003/UncJ f 58.06 73.6273 203.2073 -87.0873
CC003/UncJ m 33.95 82.3178 196.2296 -128.3296
CC004/TauUncJ f 39.66 73.6273 184.8073 -105.4873
CC004/TauUncJ m 44.9125 58.2075 159.6615 -69.8365
CC006/TauUncJ f 17.925 82.3178 180.2046 -144.3546
CC006/TauUncJ m 27.225 58.2075 141.974 -87.524
CC009/UncJ f 241.55 58.2075 356.299 126.801
CC009/UncJ m 68.725 58.2075 183.474 -46.024
CC013/GeniUncJ f 129.75 58.2075 244.499 15.001
CC013/GeniUncJ m 184.2 82.3178 346.4796 21.9204
CC017/UncJ f 146.9167 67.2122 279.4174 14.4159
CC017/UncJ m 90.78 73.6273 235.9273 -54.3673
CC018/UncJ f 37.3875 58.2075 152.1365 -77.3615
CC018/UncJ m 20.2375 58.2075 134.9865 -94.5115
CC019/TauUncJ f 177.5375 58.2075 292.2865 62.7885
CC019/TauUncJ m 175.9875 58.2075 290.7365 61.2385
CC024/GeniUncJ f 138.6857 62.2264 261.3576 16.0139
CC024/GeniUncJ m 144.375 58.2075 259.124 29.626
CC025/GeniUncJ f 251.0 67.2122 383.5007 118.4993
CC025/GeniUncJ m 353.38 52.0623 456.0146 250.7454
CC026/GeniUncJ f 19.4375 58.2075 134.1865 -95.3115
CC026/GeniUncJ m 20.7875 58.2075 135.5365 -93.9615
CC032/GeniUncJ f 100.2 58.2075 214.949 -14.549
CC032/GeniUncJ m 72.3375 58.2075 187.0865 -42.4115
CC040/TauUncJ f 71.625 58.2075 186.374 -43.124
CC040/TauUncJ m 100.3571 62.2264 223.029 -22.3147
CC041/TauUncJ f 326.1 67.2122 458.6007 193.5993
CC041/TauUncJ m 314.125 58.2075 428.874 199.376
CC051/TauUncJ f 225.8875 58.2075 340.6365 111.1385
CC051/TauUncJ m 230.2 52.0623 332.8346 127.5654
CC068/TauUncJ f 231.54 73.6273 376.6873 86.3927
CC068/TauUncJ m 381.275 58.2075 496.024 266.526


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 71.3759 42.6035 155.3636 -12.6118
CC003/UncJ both 46.005 55.2205 154.8655 -62.8555
CC004/TauUncJ both 42.2863 46.9284 134.7999 -50.2274
CC006/TauUncJ both 22.575 50.4091 121.9506 -76.8006
CC009/UncJ both 155.1375 41.1589 236.2773 73.9977
CC013/GeniUncJ both 156.975 50.4091 256.3506 57.5994
CC017/UncJ both 118.8483 49.8459 217.1135 20.5832
CC018/UncJ both 28.8125 41.1589 109.9523 -52.3273
CC019/TauUncJ both 176.7625 41.1589 257.9023 95.6227
CC024/GeniUncJ both 141.5304 42.6035 225.518 57.5427
CC025/GeniUncJ both 302.19 42.5087 385.9908 218.3892
CC026/GeniUncJ both 20.1125 41.1589 101.2523 -61.0273
CC032/GeniUncJ both 86.2687 41.1589 167.4085 5.129
CC040/TauUncJ both 85.9911 42.6035 169.9787 2.0034
CC041/TauUncJ both 320.1125 44.4567 407.7535 232.4715
CC051/TauUncJ both 228.0437 39.0468 305.0197 151.0678
CC068/TauUncJ both 306.4075 46.9284 398.9211 213.8939




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA