Phenotype measure:   JaxCC1   PPI_82

ID, description, units MPD:89073   PPI_82   average percent prepulse inhibition (PPI) evoked by 120 dB, adjusted for background noise   [%]  82 dB
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 9-11wks
Procedure acoustic startle test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - average percent prepulse inhibition (PPI) evoked by 120 dB, adjusted for background noise 82 dB



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.58338   % 0.40534   %
Median of the strain means0.47956   % 0.36249   %
SD of the strain means± 0.55928 ± 0.40158
Coefficient of variation (CV)0.9587 0.9907
Min–max range of strain means0.15969   –   2.7069   % -0.25589   –   1.594   %
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.7691 0.7691 0.6919 0.4065
strain 16 36.9119 2.307 2.0752 0.0104
sex:strain 16 6.3528 0.397 0.3572 0.9899
Residuals 214 237.8998 1.1117


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.39692 0.34401   8 0.12162 0.8667 -0.42385, 0.6548 -0.33
CC002/UncJ m 0.33942 0.26692   7 0.10088 0.7864 -0.20283, 0.6172 -0.16
CC003/UncJ f 0.62706 0.23279   5 0.10411 0.3713 0.3501, 0.91055 0.08
CC003/UncJ m 0.55913 0.13574   4 0.06787 0.2428 0.39597, 0.72575 0.38
CC004/TauUncJ f 0.2578 0.14359   8 0.05077 0.557 0.01585, 0.49452 -0.58
CC004/TauUncJ m 0.5132 0.20997   8 0.07423 0.4091 0.33442, 0.92367 0.27
CC006/TauUncJ f 2.7069 6.8953   4 3.4476 2.5473 -1.3889, 13.0 3.8
CC006/TauUncJ m 1.594 1.8011   8 0.6368 1.1299 -0.16216, 5.5833 2.96
CC009/UncJ f 0.34051 0.0964   8 0.03408 0.2831 0.22071, 0.47022 -0.43
CC009/UncJ m 0.44485 0.21611   8 0.07641 0.4858 0.25243, 0.87701 0.1
CC010/GeniUncJ f 0.53425 0.16939   5 0.07576 0.3171 0.31523, 0.70627 -0.09
CC013/GeniUncJ f 0.62393 1.0201   8 0.36066 1.635 -1.5, 1.9167 0.07
CC013/GeniUncJ m 0.01937 3.2032   4 1.6016 165.3466 -4.5, 3.0 -0.96
CC017/UncJ f 0.50073 0.15142   6 0.06182 0.3024 0.34892, 0.71676 -0.15
CC017/UncJ m 0.53106 0.12338   5 0.05518 0.2323 0.38987, 0.66776 0.31
CC018/UncJ f 0.26968 0.25726   8 0.09095 0.9539 -0.11542, 0.73158 -0.56
CC018/UncJ m 0.24877 0.14523   8 0.05135 0.5838 -0.0020202, 0.3926 -0.39
CC019/TauUncJ f 0.54865 0.24897   8 0.08802 0.4538 0.18868, 0.9782 -0.06
CC019/TauUncJ m 0.38027 0.28616   8 0.10117 0.7525 0.04202, 0.76236 -0.06
CC024/GeniUncJ f 0.25224 0.1009   7 0.03813 0.4 0.10153, 0.36936 -0.59
CC024/GeniUncJ m 0.26878 0.12941   8 0.04575 0.4815 0.04883, 0.47741 -0.34
CC025/GeniUncJ f 0.29887 0.63278   6 0.25833 2.1172 -0.89744, 0.82663 -0.51
CC025/GeniUncJ m 0.25744 0.61819   10 0.19549 2.4013 -1.0789, 0.81481 -0.37
CC026/GeniUncJ f 0.42903 0.24055   8 0.08505 0.5607 0.06311, 0.80932 -0.28
CC026/GeniUncJ m 0.36249 0.12954   8 0.0458 0.3574 0.14985, 0.49067 -0.11
CC032/GeniUncJ f 0.15969 0.20063   8 0.07093 1.2563 -0.12873, 0.41851 -0.76
CC032/GeniUncJ m -0.07382 0.34638   8 0.12246 -4.6921 -0.88851, 0.24364 -1.19
CC040/TauUncJ f 0.61099 0.31022   8 0.10968 0.5077 0.12903, 0.9095 0.05
CC040/TauUncJ m -0.25589 1.885   7 0.71245 -7.3664 -3.75, 1.1176 -1.65
CC041/TauUncJ f 0.87483 0.03931   8 0.0139 0.0449 0.79213, 0.91841 0.52
CC041/TauUncJ m 0.86968 0.19472   8 0.06885 0.2239 0.52435, 1.0282 1.16
CC051/TauUncJ f 0.45839 0.14296   8 0.05054 0.3119 0.21854, 0.64876 -0.22
CC051/TauUncJ m 0.34128 0.16521   10 0.05225 0.4841 0.08292, 0.56825 -0.16
CC068/TauUncJ f 0.6104 0.28347   5 0.12677 0.4644 0.19075, 0.91124 0.05
CC068/TauUncJ m 0.49075 0.10858   8 0.03839 0.2212 0.35235, 0.67024 0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.3969 0.3728 1.1317 -0.3379
CC002/UncJ m 0.3394 0.3985 1.1249 -0.4461
CC003/UncJ f 0.6271 0.4715 1.5565 -0.3024
CC003/UncJ m 0.5591 0.5272 1.5983 -0.48
CC004/TauUncJ f 0.2578 0.3728 0.9926 -0.477
CC004/TauUncJ m 0.5132 0.3728 1.248 -0.2216
CC006/TauUncJ f 2.7069 0.5272 3.746 1.6678
CC006/TauUncJ m 1.594 0.3728 2.3288 0.8592
CC009/UncJ f 0.3405 0.3728 1.0753 -0.3943
CC009/UncJ m 0.4449 0.3728 1.1796 -0.2899
CC013/GeniUncJ f 0.6239 0.3728 1.3587 -0.1108
CC013/GeniUncJ m 0.0194 0.5272 1.0585 -1.0198
CC017/UncJ f 0.5007 0.4304 1.3492 -0.3477
CC017/UncJ m 0.5311 0.4715 1.4605 -0.3984
CC018/UncJ f 0.2697 0.3728 1.0045 -0.4651
CC018/UncJ m 0.2488 0.3728 0.9835 -0.486
CC019/TauUncJ f 0.5487 0.3728 1.2834 -0.1861
CC019/TauUncJ m 0.3803 0.3728 1.1151 -0.3545
CC024/GeniUncJ f 0.2522 0.3985 1.0378 -0.5333
CC024/GeniUncJ m 0.2688 0.3728 1.0036 -0.466
CC025/GeniUncJ f 0.2989 0.4304 1.1473 -0.5496
CC025/GeniUncJ m 0.2574 0.3334 0.9146 -0.3998
CC026/GeniUncJ f 0.429 0.3728 1.1638 -0.3058
CC026/GeniUncJ m 0.3625 0.3728 1.0973 -0.3723
CC032/GeniUncJ f 0.1597 0.3728 0.8945 -0.5751
CC032/GeniUncJ m -0.0738 0.3728 0.661 -0.8086
CC040/TauUncJ f 0.611 0.3728 1.3458 -0.1238
CC040/TauUncJ m -0.2559 0.3985 0.5296 -1.0414
CC041/TauUncJ f 0.8748 0.3728 1.6096 0.14
CC041/TauUncJ m 0.8697 0.3728 1.6045 0.1349
CC051/TauUncJ f 0.4584 0.3728 1.1932 -0.2764
CC051/TauUncJ m 0.3413 0.3334 0.9985 -0.3159
CC068/TauUncJ f 0.6104 0.4715 1.5398 -0.319
CC068/TauUncJ m 0.4907 0.3728 1.2255 -0.244


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 0.3682 0.2728 0.906 -0.1696
CC003/UncJ both 0.5931 0.3536 1.2902 -0.104
CC004/TauUncJ both 0.3855 0.2636 0.9051 -0.1341
CC006/TauUncJ both 2.1505 0.3228 2.7868 1.5141
CC009/UncJ both 0.3927 0.2636 0.9122 -0.1269
CC013/GeniUncJ both 0.3217 0.3228 0.958 -0.3147
CC017/UncJ both 0.5159 0.3192 1.1451 -0.1133
CC018/UncJ both 0.2592 0.2636 0.7788 -0.2603
CC019/TauUncJ both 0.4645 0.2636 0.984 -0.0551
CC024/GeniUncJ both 0.2605 0.2728 0.7983 -0.2773
CC025/GeniUncJ both 0.2782 0.2722 0.8148 -0.2584
CC026/GeniUncJ both 0.3958 0.2636 0.9153 -0.1238
CC032/GeniUncJ both 0.0429 0.2636 0.5625 -0.4766
CC040/TauUncJ both 0.1776 0.2728 0.7154 -0.3602
CC041/TauUncJ both 0.8723 0.2636 1.3918 0.3527
CC051/TauUncJ both 0.3998 0.2501 0.8927 -0.0931
CC068/TauUncJ both 0.5506 0.3005 1.143 -0.0418




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA