Phenotype measure:   JaxCC1   PPI_78

ID, description, units MPD:89072   PPI_78   average percent prepulse inhibition (PPI) evoked by 120 dB, adjusted for background noise   [%]  78 dB
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 9-11wks
Procedure acoustic startle test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - average percent prepulse inhibition (PPI) evoked by 120 dB, adjusted for background noise 78 dB



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means-0.12254   % 0.36853   %
Median of the strain means0.20062   % 0.18066   %
SD of the strain means± 1.4815 ± 0.4765
Coefficient of variation (CV)-12.0904 1.293
Min–max range of strain means-5.983   –   0.5431   % -0.13106   –   1.8974   %
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.3382 7.3382 2.9434 0.0877
strain 16 22.2275 1.3892 0.5572 0.9127
sex:strain 16 159.5623 9.9726 4.0001 < 0.0001
Residuals 214 533.5255 2.4931


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 0.13942 0.38237   8 0.13519 2.7426 -0.57025, 0.578 0.18
CC002/UncJ m 0.02151 0.20541   7 0.07764 9.549 -0.21875, 0.42466 -0.73
CC003/UncJ f 0.42833 0.16901   5 0.07559 0.3946 0.21429, 0.68431 0.37
CC003/UncJ m 0.18066 0.27102   4 0.13551 1.5002 -0.08115, 0.52425 -0.39
CC004/TauUncJ f -0.05922 0.17374   8 0.06143 -2.9341 -0.4716, 0.0432 0.04
CC004/TauUncJ m 0.25404 0.26834   8 0.09487 1.0563 0.01906, 0.83791 -0.24
CC006/TauUncJ f -5.983 10.707   4 5.3535 -1.7896 -22.0, 0.31977 -3.96
CC006/TauUncJ m 1.8974 2.8161   8 0.99564 1.4842 -0.07778, 8.1667 3.21
CC009/UncJ f 0.10986 0.06428   8 0.02273 0.5851 0.00816993, 0.19648 0.16
CC009/UncJ m 0.15966 0.24162   8 0.08543 1.5134 -0.12621, 0.6016 -0.44
CC010/GeniUncJ f 0.4202 0.2093   5 0.0936 0.4981 0.21116, 0.69689 0.37
CC013/GeniUncJ f 0.51557 3.0072   8 1.0632 5.8328 -5.0, 6.2083 0.43
CC013/GeniUncJ m 0.93511 1.8166   4 0.90829 1.9427 -0.37037, 3.625 1.19
CC017/UncJ f 0.22714 0.20843   6 0.08509 0.9176 -0.04797, 0.52914 0.24
CC017/UncJ m 0.40169 0.10798   5 0.04829 0.2688 0.26324, 0.56637 0.07
CC018/UncJ f 0.10176 0.18037   8 0.06377 1.7726 -0.20801, 0.40363 0.15
CC018/UncJ m 0.09652 0.36401   8 0.1287 3.7711 -0.59461, 0.44838 -0.57
CC019/TauUncJ f 0.30373 0.21033   8 0.07436 0.6925 -0.01887, 0.6657 0.29
CC019/TauUncJ m 0.3381 0.31923   8 0.11286 0.9442 -0.18908, 0.81633 -0.06
CC024/GeniUncJ f 0.14538 0.10758   7 0.04066 0.74 -0.01138, 0.32315 0.18
CC024/GeniUncJ m 0.1713 0.10295   8 0.0364 0.601 -0.00212404, 0.31882 -0.41
CC025/GeniUncJ f -0.45131 1.3639   6 0.55679 -3.022 -3.0513, 0.61993 -0.22
CC025/GeniUncJ m 0.16818 0.50602   10 0.16002 3.0088 -0.86842, 0.55102 -0.42
CC026/GeniUncJ f 0.17411 0.21363   8 0.07553 1.227 -0.23163, 0.50424 0.2
CC026/GeniUncJ m 0.14687 0.10517   8 0.03718 0.7161 0.00881057, 0.2896 -0.47
CC032/GeniUncJ f 0.1113 0.23516   8 0.08314 2.1129 -0.24738, 0.45442 0.16
CC032/GeniUncJ m -0.13106 0.39714   8 0.14041 -3.0304 -1.0588, 0.22667 -1.05
CC040/TauUncJ f 0.3152 0.38563   8 0.13634 1.2235 -0.28378, 0.77315 0.3
CC040/TauUncJ m 0.76031 2.5821   7 0.97593 3.3961 -1.6923, 6.25 0.82
CC041/TauUncJ f 0.5431 0.14742   8 0.05212 0.2714 0.33368, 0.72717 0.45
CC041/TauUncJ m 0.58445 0.1636   8 0.05784 0.2799 0.39598, 0.84507 0.45
CC051/TauUncJ f 0.26205 0.06865   8 0.02427 0.262 0.16019, 0.34455 0.26
CC051/TauUncJ m 0.09674 0.18764   10 0.05934 1.9396 -0.18296, 0.35681 -0.57
CC068/TauUncJ f 0.49074 0.2549   5 0.11399 0.5194 0.21552, 0.85207 0.41
CC068/TauUncJ m 0.1835 0.08354   8 0.02953 0.4552 0.07639, 0.27561 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 0.1394 0.5582 1.2398 -0.9609
CC002/UncJ m 0.0215 0.5968 1.1979 -1.1548
CC003/UncJ f 0.4283 0.7061 1.8202 -0.9635
CC003/UncJ m 0.1807 0.7895 1.7368 -1.3755
CC004/TauUncJ f -0.0592 0.5582 1.0412 -1.1596
CC004/TauUncJ m 0.254 0.5582 1.3544 -0.8463
CC006/TauUncJ f -5.983 0.7895 -4.4268 -7.5391
CC006/TauUncJ m 1.8974 0.5582 2.9977 0.797
CC009/UncJ f 0.1099 0.5582 1.2102 -0.9905
CC009/UncJ m 0.1597 0.5582 1.26 -0.9407
CC013/GeniUncJ f 0.5156 0.5582 1.6159 -0.5848
CC013/GeniUncJ m 0.9351 0.7895 2.4913 -0.621
CC017/UncJ f 0.2271 0.6446 1.4977 -1.0435
CC017/UncJ m 0.4017 0.7061 1.7936 -0.9902
CC018/UncJ f 0.1018 0.5582 1.2021 -0.9986
CC018/UncJ m 0.0965 0.5582 1.1969 -1.0038
CC019/TauUncJ f 0.3037 0.5582 1.4041 -0.7966
CC019/TauUncJ m 0.3381 0.5582 1.4385 -0.7623
CC024/GeniUncJ f 0.1454 0.5968 1.3217 -1.031
CC024/GeniUncJ m 0.1713 0.5582 1.2717 -0.9291
CC025/GeniUncJ f -0.4513 0.6446 0.8193 -1.7219
CC025/GeniUncJ m 0.1682 0.4993 1.1524 -0.816
CC026/GeniUncJ f 0.1741 0.5582 1.2745 -0.9263
CC026/GeniUncJ m 0.1469 0.5582 1.2472 -0.9535
CC032/GeniUncJ f 0.1113 0.5582 1.2117 -0.9891
CC032/GeniUncJ m -0.1311 0.5582 0.9693 -1.2314
CC040/TauUncJ f 0.3152 0.5582 1.4156 -0.7852
CC040/TauUncJ m 0.7603 0.5968 1.9366 -0.416
CC041/TauUncJ f 0.5431 0.5582 1.6435 -0.5573
CC041/TauUncJ m 0.5845 0.5582 1.6848 -0.5159
CC051/TauUncJ f 0.2621 0.5582 1.3624 -0.8383
CC051/TauUncJ m 0.0967 0.4993 1.0809 -0.8875
CC068/TauUncJ f 0.4907 0.7061 1.8826 -0.9011
CC068/TauUncJ m 0.1835 0.5582 1.2839 -0.9169


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 0.0805 0.4086 0.8859 -0.7249
CC003/UncJ both 0.3045 0.5296 1.3484 -0.7394
CC004/TauUncJ both 0.0974 0.3947 0.8755 -0.6807
CC006/TauUncJ both -2.0428 0.4835 -1.0899 -2.9957
CC009/UncJ both 0.1348 0.3947 0.9128 -0.6433
CC013/GeniUncJ both 0.7253 0.4835 1.6783 -0.2276
CC017/UncJ both 0.3144 0.4781 1.2567 -0.6279
CC018/UncJ both 0.0991 0.3947 0.8772 -0.6789
CC019/TauUncJ both 0.3209 0.3947 1.099 -0.4572
CC024/GeniUncJ both 0.1583 0.4086 0.9637 -0.647
CC025/GeniUncJ both -0.1416 0.4077 0.662 -0.9452
CC026/GeniUncJ both 0.1605 0.3947 0.9386 -0.6176
CC032/GeniUncJ both -0.0099 0.3947 0.7682 -0.788
CC040/TauUncJ both 0.5378 0.4086 1.3431 -0.2676
CC041/TauUncJ both 0.5638 0.3947 1.3419 -0.2143
CC051/TauUncJ both 0.1794 0.3745 0.9175 -0.5588
CC068/TauUncJ both 0.3371 0.4501 1.2243 -0.55




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA