Phenotype measure:   JaxCC1   PPI_74

ID, description, units MPD:89071   PPI_74   average percent prepulse inhibition (PPI) evoked by 120 dB, adjusted for background noise   [%]  74 dB
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 9-11wks
Procedure acoustic startle test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - average percent prepulse inhibition (PPI) evoked by 120 dB, adjusted for background noise 74 dB



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means-0.18723   % 0.24256   %
Median of the strain means-0.03255   % -0.0021825   %
SD of the strain means± 0.53968 ± 1.1047
Coefficient of variation (CV)-2.8824 4.5543
Min–max range of strain means-2.1931   –   0.23799   % -0.94561   –   4.17   %
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.3192 5.3192 2.4751 0.1171
strain 16 14.1288 0.8831 0.4109 0.9789
sex:strain 16 98.6759 6.1672 2.8697 0.0003
Residuals 214 459.9029 2.1491


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f -0.18574 0.53719   8 0.18992 -2.8921 -1.3447, 0.28608 0.0
CC002/UncJ m -0.08885 0.21447   7 0.08106 -2.4138 -0.4017, 0.28062 -0.3
CC003/UncJ f -0.18797 0.34383   5 0.15376 -1.8291 -0.53977, 0.31085 0.0
CC003/UncJ m -0.46561 0.37242   4 0.18621 -0.7999 -0.99308, -0.11663 -0.64
CC004/TauUncJ f -0.1533 0.1528   8 0.05402 -0.9967 -0.43391, 0.04061 0.06
CC004/TauUncJ m -0.0303 0.10774   8 0.03809 -3.5556 -0.16647, 0.17809 -0.25
CC006/TauUncJ f -2.1931 2.5979   4 1.2989 -1.1846 -6.0, -0.17442 -3.72
CC006/TauUncJ m 1.3968 2.3715   8 0.83845 1.6978 -0.51351, 6.8333 1.04
CC009/UncJ f 0.01467 0.10305   8 0.03643 7.0226 -0.18685, 0.1732 0.37
CC009/UncJ m 0.01112 0.47392   8 0.16756 42.6047 -0.72087, 0.76738 -0.21
CC010/GeniUncJ f 0.0478 0.07033   5 0.03145 1.4712 -0.0317, 0.15544 0.44
CC013/GeniUncJ f -0.75377 5.0677   8 1.7917 -6.7231 -13.0, 3.3333 -1.05
CC013/GeniUncJ m 4.17 7.6614   4 3.8307 1.8372 -0.44444, 15.625 3.56
CC017/UncJ f -0.10939 0.27879   6 0.11382 -2.5487 -0.59779, 0.16667 0.14
CC017/UncJ m 0.13899 0.10191   5 0.04557 0.7332 0.04545, 0.31379 -0.09
CC018/UncJ f 0.01456 0.09616   8 0.034 6.6069 -0.08703, 0.2031 0.37
CC018/UncJ m -0.03113 0.24512   8 0.08666 -7.874 -0.4229, 0.38525 -0.25
CC019/TauUncJ f -0.04488 0.23198   8 0.08202 -5.1689 -0.46698, 0.27326 0.26
CC019/TauUncJ m 0.03626 0.42493   8 0.15023 11.7201 -0.94606, 0.42857 -0.19
CC024/GeniUncJ f -0.00865286 0.1546   7 0.05843 -17.867 -0.25734, 0.1675 0.33
CC024/GeniUncJ m 0.04896 0.107   8 0.03783 2.1852 -0.18103, 0.14971 -0.18
CC025/GeniUncJ f -0.08505 0.63661   6 0.25989 -7.4848 -1.2564, 0.40221 0.19
CC025/GeniUncJ m -0.19266 0.49416   10 0.15627 -2.565 -0.92105, 0.4357 -0.39
CC026/GeniUncJ f -0.11833 0.18723   8 0.06619 -1.5823 -0.36115, 0.15148 0.13
CC026/GeniUncJ m -0.0021825 0.17634   8 0.06234 -80.7955 -0.30208, 0.19059 -0.22
CC032/GeniUncJ f 0.06918 0.27083   8 0.09575 3.9148 -0.40724, 0.36875 0.48
CC032/GeniUncJ m 0.04758 0.18858   8 0.06667 3.9632 -0.32843, 0.32829 -0.18
CC040/TauUncJ f 0.23799 0.45354   8 0.16035 1.9057 -0.51899, 0.75745 0.79
CC040/TauUncJ m -0.94561 2.1359   7 0.80729 -2.2587 -5.25, 0.71 -1.08
CC041/TauUncJ f -0.00050375 0.21349   8 0.07548 -423.8017 -0.21532, 0.30405 0.35
CC041/TauUncJ m -0.01446 0.19398   8 0.06858 -13.416 -0.30548, 0.16901 -0.23
CC051/TauUncJ f -0.02022 0.19382   8 0.06852 -9.5836 -0.43088, 0.2221 0.31
CC051/TauUncJ m -0.006074 0.21221   10 0.06711 -34.938 -0.33865, 0.28321 -0.23
CC068/TauUncJ f 0.10649 0.46218   5 0.20669 4.34 -0.60405, 0.68047 0.54
CC068/TauUncJ m 0.0507 0.17096   8 0.06044 3.3721 -0.29482, 0.26649 -0.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f -0.1857 0.5183 0.8359 -1.2074
CC002/UncJ m -0.0889 0.5541 1.0033 -1.181
CC003/UncJ f -0.188 0.6556 1.1043 -1.4802
CC003/UncJ m -0.4656 0.733 0.9792 -1.9104
CC004/TauUncJ f -0.1533 0.5183 0.8683 -1.1749
CC004/TauUncJ m -0.0303 0.5183 0.9913 -1.0519
CC006/TauUncJ f -2.1931 0.733 -0.7483 -3.6379
CC006/TauUncJ m 1.3968 0.5183 2.4184 0.3752
CC009/UncJ f 0.0147 0.5183 1.0363 -1.007
CC009/UncJ m 0.0111 0.5183 1.0328 -1.0105
CC013/GeniUncJ f -0.7538 0.5183 0.2679 -1.7754
CC013/GeniUncJ m 4.17 0.733 5.6148 2.7252
CC017/UncJ f -0.1094 0.5985 1.0703 -1.2891
CC017/UncJ m 0.139 0.6556 1.4313 -1.1533
CC018/UncJ f 0.0146 0.5183 1.0362 -1.0071
CC018/UncJ m -0.0311 0.5183 0.9905 -1.0528
CC019/TauUncJ f -0.0449 0.5183 0.9767 -1.0665
CC019/TauUncJ m 0.0363 0.5183 1.0579 -0.9854
CC024/GeniUncJ f -0.0087 0.5541 1.0835 -1.1008
CC024/GeniUncJ m 0.049 0.5183 1.0706 -0.9727
CC025/GeniUncJ f -0.0851 0.5985 1.0946 -1.2647
CC025/GeniUncJ m -0.1927 0.4636 0.7211 -1.1064
CC026/GeniUncJ f -0.1183 0.5183 0.9033 -1.14
CC026/GeniUncJ m -0.0022 0.5183 1.0194 -1.0238
CC032/GeniUncJ f 0.0692 0.5183 1.0908 -0.9524
CC032/GeniUncJ m 0.0476 0.5183 1.0692 -0.974
CC040/TauUncJ f 0.238 0.5183 1.2596 -0.7836
CC040/TauUncJ m -0.9456 0.5541 0.1466 -2.0378
CC041/TauUncJ f -0.0005 0.5183 1.0211 -1.0221
CC041/TauUncJ m -0.0145 0.5183 1.0072 -1.0361
CC051/TauUncJ f -0.0202 0.5183 1.0014 -1.0419
CC051/TauUncJ m -0.0061 0.4636 0.9077 -0.9198
CC068/TauUncJ f 0.1065 0.6556 1.3988 -1.1858
CC068/TauUncJ m 0.0507 0.5183 1.0723 -0.9709


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both -0.1373 0.3794 0.6105 -0.8851
CC003/UncJ both -0.3268 0.4917 0.6424 -1.296
CC004/TauUncJ both -0.0918 0.3665 0.6306 -0.8142
CC006/TauUncJ both -0.3982 0.4489 0.4866 -1.2829
CC009/UncJ both 0.0129 0.3665 0.7353 -0.7095
CC013/GeniUncJ both 1.7081 0.4489 2.5929 0.8234
CC017/UncJ both 0.0148 0.4438 0.8897 -0.8601
CC018/UncJ both -0.0083 0.3665 0.7141 -0.7307
CC019/TauUncJ both -0.0043 0.3665 0.7181 -0.7267
CC024/GeniUncJ both 0.0202 0.3794 0.7679 -0.7276
CC025/GeniUncJ both -0.1389 0.3785 0.6072 -0.8849
CC026/GeniUncJ both -0.0603 0.3665 0.6621 -0.7827
CC032/GeniUncJ both 0.0584 0.3665 0.7808 -0.664
CC040/TauUncJ both -0.3538 0.3794 0.3939 -1.1016
CC041/TauUncJ both -0.0075 0.3665 0.7149 -0.7299
CC051/TauUncJ both -0.0131 0.3477 0.6722 -0.6985
CC068/TauUncJ both 0.0786 0.4179 0.9023 -0.7451




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA