Project measure / variable:   JaxCC1   pct_center_slope_OF

ID, description, units MPD:89040   pct_center_slope_OF   percentage of total time in center of arena, slope, 20 min test    
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in center of arena, slope, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.3939   None -0.44155   None
Median of the strain means1.1069   None 0.38   None
SD of the strain means± 2.8635 ± 3.9923
Coefficient of variation (CV)7.2695 -9.0415
Min–max range of strain means-6.59   –   4.474   None -11.969   –   5.3675   None
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 105.3477 105.3477 3.9412 0.0484
strain 16 2412.4011 150.7751 5.6407 < 0.0001
sex:strain 16 703.2056 43.9504 1.6442 0.0597
Residuals 215 5746.9328 26.7299


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f -6.59 4.7983   8 1.6964 -0.7281 -13.06, 0.29 -2.44
CC002/UncJ m -3.8771 3.9587   7 1.4962 -1.021 -9.94, 3.25 -0.86
CC003/UncJ f 4.474 4.8063   5 2.1494 1.0743 0.4, 12.67 1.42
CC003/UncJ m 2.5525 2.7478   4 1.3739 1.0765 1.04, 6.67 0.75
CC004/TauUncJ f 2.5637 2.8239   8 0.9984 1.1015 -0.83, 7.5 0.76
CC004/TauUncJ m 5.3675 3.6409   8 1.2872 0.6783 -0.85, 10.22 1.46
CC006/TauUncJ f 2.495 2.3421   4 1.1711 0.9387 0.3, 5.81 0.73
CC006/TauUncJ m 0.20375 2.6345   8 0.93145 12.9302 -2.49, 5.35 0.16
CC009/UncJ f -0.4825 0.50874   8 0.17987 -1.0544 -1.37, 0.26 -0.31
CC009/UncJ m 1.0112 2.0712   8 0.73229 2.0482 -1.48, 4.32 0.36
CC010/GeniUncJ f -2.4675 1.7456   4 0.87282 -0.7075 -4.8, -0.66 -1.0
CC013/GeniUncJ f 3.1888 5.3147   8 1.879 1.6667 -7.55, 7.9 0.98
CC013/GeniUncJ m 1.16 5.1244   4 2.5622 4.4176 -5.63, 6.64 0.4
CC017/UncJ f 2.2217 3.14   6 1.2819 1.4134 -0.71, 7.4 0.64
CC017/UncJ m 3.026 3.7593   5 1.6812 1.2423 -1.71, 7.53 0.87
CC018/UncJ f 1.6013 4.492   8 1.5881 2.8053 -7.35, 7.27 0.42
CC018/UncJ m 1.325 5.2988   8 1.8734 3.9991 -10.08, 5.99 0.44
CC019/TauUncJ f 1.165 4.1827   8 1.4788 3.5903 -2.06, 10.93 0.27
CC019/TauUncJ m 1.0412 2.2363   8 0.79066 2.1477 -1.1, 6.2 0.37
CC024/GeniUncJ f -0.06571 2.6456   7 0.99995 -40.2595 -3.38, 4.02 -0.16
CC024/GeniUncJ m -3.3037 6.4431   8 2.278 -1.9503 -16.4, 2.7 -0.72
CC025/GeniUncJ f 0.22333 4.1674   6 1.7013 18.6599 -6.96, 5.71 -0.06
CC025/GeniUncJ m -11.969 12.978   10 4.104 -1.0843 -33.7, 2.33 -2.89
CC026/GeniUncJ f 0.99625 1.3913   8 0.4919 1.3965 -1.82, 2.71 0.21
CC026/GeniUncJ m 0.18875 1.7201   8 0.60816 9.1133 -2.37, 2.88 0.16
CC032/GeniUncJ f 2.3463 5.022   8 1.7755 2.1404 -5.61, 12.07 0.68
CC032/GeniUncJ m 1.995 2.52   8 0.89094 1.2631 -1.45, 5.56 0.61
CC040/TauUncJ f 1.9863 1.6307   8 0.57654 0.821 -1.0, 4.7 0.56
CC040/TauUncJ m 0.38 3.1987   8 1.1309 8.4176 -4.8, 5.73 0.21
CC041/TauUncJ f -3.7525 2.965   8 1.0483 -0.7902 -7.96, -0.4 -1.45
CC041/TauUncJ m -1.17 1.0344   8 0.3657 -0.8841 -2.77, 0.18 -0.18
CC051/TauUncJ f 1.0487 2.4422   8 0.86345 2.3287 -2.26, 4.99 0.23
CC051/TauUncJ m 0.37 3.1501   10 0.99616 8.5139 -2.07, 8.76 0.2
CC068/TauUncJ f -3.862 19.589   5 8.7604 -5.0722 -37.5, 13.3 -1.49
CC068/TauUncJ m -5.8075 5.829   8 2.0609 -1.0037 -14.12, 1.49 -1.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f -6.59 1.8279 -2.9871 -10.1929
CC002/UncJ m -3.8771 1.9541 -0.0255 -7.7288
CC003/UncJ f 4.474 2.3121 9.0314 -0.0834
CC003/UncJ m 2.5525 2.585 7.6478 -2.5428
CC004/TauUncJ f 2.5638 1.8279 6.1667 -1.0392
CC004/TauUncJ m 5.3675 1.8279 8.9704 1.7646
CC006/TauUncJ f 2.495 2.585 7.5903 -2.6003
CC006/TauUncJ m 0.2038 1.8279 3.8067 -3.3992
CC009/UncJ f -0.4825 1.8279 3.1204 -4.0854
CC009/UncJ m 1.0112 1.8279 4.6142 -2.5917
CC013/GeniUncJ f 3.1887 1.8279 6.7917 -0.4142
CC013/GeniUncJ m 1.16 2.585 6.2553 -3.9353
CC017/UncJ f 2.2217 2.1107 6.3819 -1.9386
CC017/UncJ m 3.026 2.3121 7.5834 -1.5314
CC018/UncJ f 1.6012 1.8279 5.2042 -2.0017
CC018/UncJ m 1.325 1.8279 4.9279 -2.2779
CC019/TauUncJ f 1.165 1.8279 4.7679 -2.4379
CC019/TauUncJ m 1.0412 1.8279 4.6442 -2.5617
CC024/GeniUncJ f -0.0657 1.9541 3.786 -3.9174
CC024/GeniUncJ m -3.3038 1.8279 0.2992 -6.9067
CC025/GeniUncJ f 0.2233 2.1107 4.3836 -3.9369
CC025/GeniUncJ m -11.969 1.6349 -8.7465 -15.1915
CC026/GeniUncJ f 0.9963 1.8279 4.5992 -2.6067
CC026/GeniUncJ m 0.1888 1.8279 3.7917 -3.4142
CC032/GeniUncJ f 2.3463 1.8279 5.9492 -1.2567
CC032/GeniUncJ m 1.995 1.8279 5.5979 -1.6079
CC040/TauUncJ f 1.9862 1.8279 5.5892 -1.6167
CC040/TauUncJ m 0.38 1.8279 3.9829 -3.2229
CC041/TauUncJ f -3.7525 1.8279 -0.1496 -7.3554
CC041/TauUncJ m -1.17 1.8279 2.4329 -4.7729
CC051/TauUncJ f 1.0488 1.8279 4.6517 -2.5542
CC051/TauUncJ m 0.37 1.6349 3.5925 -2.8525
CC068/TauUncJ f -3.862 2.3121 0.6954 -8.4194
CC068/TauUncJ m -5.8075 1.8279 -2.2046 -9.4104


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both -5.2336 1.3379 -2.5965 -7.8706
CC003/UncJ both 3.5132 1.7341 6.9313 0.0952
CC004/TauUncJ both 3.9656 1.2925 6.5133 1.418
CC006/TauUncJ both 1.3494 1.583 4.4696 -1.7708
CC009/UncJ both 0.2644 1.2925 2.812 -2.2833
CC013/GeniUncJ both 2.1744 1.583 5.2946 -0.9458
CC017/UncJ both 2.6238 1.5653 5.7092 -0.4615
CC018/UncJ both 1.4631 1.2925 4.0108 -1.0845
CC019/TauUncJ both 1.1031 1.2925 3.6508 -1.4445
CC024/GeniUncJ both -1.6847 1.3379 0.9523 -4.3218
CC025/GeniUncJ both -5.8728 1.3349 -3.2416 -8.504
CC026/GeniUncJ both 0.5925 1.2925 3.1401 -1.9551
CC032/GeniUncJ both 2.1706 1.2925 4.7183 -0.377
CC040/TauUncJ both 1.1831 1.2925 3.7308 -1.3645
CC041/TauUncJ both -2.4613 1.2925 0.0864 -5.0089
CC051/TauUncJ both 0.7094 1.2262 3.1263 -1.7075
CC068/TauUncJ both -4.8347 1.4737 -1.93 -7.7395




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA