Phenotype measure:   JaxCC1   pct_center_habit_OF


  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in center, habituation ratio, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means0.29823   ratio -0.52192   ratio
Median of the strain means1.125   ratio 0.59444   ratio
SD of the strain means± 2.964 ± 4.1887
Coefficient of variation (CV)9.9386 -8.0256
Min–max range of strain means-7.1475   –   4.314   ratio -12.747   –   5.0088   ratio
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 108.3369 108.3369 3.9899 0.047
strain 16 2646.4499 165.4031 6.0916 < 0.0001
sex:strain 16 788.2425 49.2652 1.8144 0.0308
Residuals 214 5810.6763 27.1527


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f -7.1475 5.3725   8 1.8995 -0.7517 -14.27, 0.67 -2.51
CC002/UncJ m -4.1329 4.6477   7 1.7567 -1.1246 -11.26, 4.19 -0.86
CC003/UncJ f 4.314 4.1988   5 1.8778 0.9733 1.41, 11.5 1.35
CC003/UncJ m 2.6275 2.824   4 1.412 1.0748 0.87, 6.83 0.75
CC004/TauUncJ f 2.5913 2.9269   8 1.0348 1.1295 -1.17, 7.74 0.77
CC004/TauUncJ m 5.0088 4.2969   8 1.5192 0.8579 -1.16, 10.94 1.32
CC006/TauUncJ f 2.26 2.9764   4 1.4882 1.317 -0.42, 6.34 0.66
CC006/TauUncJ m 0.445 2.6925   8 0.95193 6.0505 -1.82, 6.47 0.23
CC009/UncJ f -0.32 0.77899   8 0.27542 -2.4344 -1.28, 0.86 -0.21
CC009/UncJ m 1.2188 2.2143   8 0.78288 1.8169 -1.48, 4.88 0.42
CC010/GeniUncJ f -2.86 1.9728   4 0.98639 -0.6898 -5.33, -0.73 -1.07
CC013/GeniUncJ f 3.6463 6.2913   8 2.2243 1.7254 -8.46, 9.77 1.13
CC013/GeniUncJ m 1.76 4.8352   4 2.4176 2.7473 -4.16, 7.68 0.54
CC017/UncJ f 2.1433 3.4398   6 1.4043 1.6049 -1.09, 7.61 0.62
CC017/UncJ m 2.624 3.8178   5 1.7074 1.455 -1.59, 7.13 0.75
CC018/UncJ f 1.4138 4.4098   8 1.5591 3.1192 -7.64, 6.49 0.38
CC018/UncJ m 1.6825 6.0334   8 2.1331 3.586 -11.84, 6.77 0.53
CC019/TauUncJ f 1.0925 4.6649   8 1.6493 4.2699 -2.72, 11.99 0.27
CC019/TauUncJ m 1.0425 2.6633   8 0.94161 2.5547 -1.13, 7.32 0.37
CC024/GeniUncJ f -0.49714 2.2353   7 0.84487 -4.4963 -4.48, 2.4 -0.27
CC024/GeniUncJ m -3.4837 7.2023   8 2.5464 -2.0674 -18.66, 3.01 -0.71
CC025/GeniUncJ f 0.15167 4.5679   6 1.8649 30.1183 -7.73, 6.21 -0.05
CC025/GeniUncJ m -12.747 12.778   10 4.0407 -1.0024 -33.33, 2.59 -2.92
CC026/GeniUncJ f 0.71625 1.2714   8 0.44951 1.7751 -2.12, 2.12 0.14
CC026/GeniUncJ m 0.41 1.8465   8 0.65284 4.5037 -2.44, 3.1 0.22
CC032/GeniUncJ f 2.3737 5.2286   8 1.8486 2.2027 -6.02, 12.38 0.7
CC032/GeniUncJ m 1.6462 2.6533   8 0.93807 1.6117 -0.91, 5.73 0.52
CC040/TauUncJ f 1.7763 1.5244   8 0.53895 0.8582 -1.46, 3.53 0.5
CC040/TauUncJ m 0.29375 2.9199   8 1.0323 9.94 -2.66, 5.82 0.19
CC041/TauUncJ f -4.5738 3.4757   8 1.2288 -0.7599 -9.52, -0.74 -1.64
CC041/TauUncJ m -1.4975 1.2547   8 0.4436 -0.8379 -3.4, 0.2 -0.23
CC051/TauUncJ f 1.1575 2.6752   8 0.94584 2.3112 -2.51, 6.06 0.29
CC051/TauUncJ m 0.59444 3.4999   9 1.1666 5.8878 -2.28, 9.43 0.27
CC068/TauUncJ f -2.87 17.034   5 7.6179 -5.9353 -31.21, 14.5 -1.07
CC068/TauUncJ m -6.365 6.5346   8 2.3103 -1.0267 -15.71, 1.18 -1.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f -7.1475 1.8423 -3.5161 -10.7789
CC002/UncJ m -4.1329 1.9695 -0.2507 -8.015
CC003/UncJ f 4.314 2.3304 8.9074 -0.2794
CC003/UncJ m 2.6275 2.6054 7.7631 -2.5081
CC004/TauUncJ f 2.5913 1.8423 6.2226 -1.0401
CC004/TauUncJ m 5.0088 1.8423 8.6401 1.3774
CC006/TauUncJ f 2.26 2.6054 7.3956 -2.8756
CC006/TauUncJ m 0.445 1.8423 4.0764 -3.1864
CC009/UncJ f -0.32 1.8423 3.3114 -3.9514
CC009/UncJ m 1.2187 1.8423 4.8501 -2.4126
CC013/GeniUncJ f 3.6463 1.8423 7.2776 0.0149
CC013/GeniUncJ m 1.76 2.6054 6.8956 -3.3756
CC017/UncJ f 2.1433 2.1273 6.3365 -2.0498
CC017/UncJ m 2.624 2.3304 7.2174 -1.9694
CC018/UncJ f 1.4137 1.8423 5.0451 -2.2176
CC018/UncJ m 1.6825 1.8423 5.3139 -1.9489
CC019/TauUncJ f 1.0925 1.8423 4.7239 -2.5389
CC019/TauUncJ m 1.0425 1.8423 4.6739 -2.5889
CC024/GeniUncJ f -0.4971 1.9695 3.385 -4.3793
CC024/GeniUncJ m -3.4838 1.8423 0.1476 -7.1151
CC025/GeniUncJ f 0.1517 2.1273 4.3448 -4.0415
CC025/GeniUncJ m -12.747 1.6478 -9.499 -15.995
CC026/GeniUncJ f 0.7162 1.8423 4.3476 -2.9151
CC026/GeniUncJ m 0.41 1.8423 4.0414 -3.2214
CC032/GeniUncJ f 2.3737 1.8423 6.0051 -1.2576
CC032/GeniUncJ m 1.6462 1.8423 5.2776 -1.9851
CC040/TauUncJ f 1.7763 1.8423 5.4076 -1.8551
CC040/TauUncJ m 0.2938 1.8423 3.9251 -3.3376
CC041/TauUncJ f -4.5737 1.8423 -0.9424 -8.2051
CC041/TauUncJ m -1.4975 1.8423 2.1339 -5.1289
CC051/TauUncJ f 1.1575 1.8423 4.7889 -2.4739
CC051/TauUncJ m 0.5944 1.7369 4.0181 -2.8293
CC068/TauUncJ f -2.87 2.3304 1.7234 -7.4634
CC068/TauUncJ m -6.365 1.8423 -2.7336 -9.9964


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both -5.6402 1.3484 -2.9823 -8.2981
CC003/UncJ both 3.4708 1.7478 6.9158 0.0257
CC004/TauUncJ both 3.8 1.3027 6.3678 1.2322
CC006/TauUncJ both 1.3525 1.5955 4.4974 -1.7924
CC009/UncJ both 0.4494 1.3027 3.0172 -2.1184
CC013/GeniUncJ both 2.7031 1.5955 5.848 -0.4417
CC017/UncJ both 2.3837 1.5777 5.4934 -0.7261
CC018/UncJ both 1.5481 1.3027 4.1159 -1.0197
CC019/TauUncJ both 1.0675 1.3027 3.6353 -1.5003
CC024/GeniUncJ both -1.9904 1.3484 0.6675 -4.6483
CC025/GeniUncJ both -6.2977 1.3454 -3.6457 -8.9497
CC026/GeniUncJ both 0.5631 1.3027 3.1309 -2.0047
CC032/GeniUncJ both 2.01 1.3027 4.5778 -0.5578
CC040/TauUncJ both 1.035 1.3027 3.6028 -1.5328
CC041/TauUncJ both -3.0356 1.3027 -0.4678 -5.6034
CC051/TauUncJ both 0.876 1.266 3.3714 -1.6195
CC068/TauUncJ both -4.6175 1.4853 -1.6898 -7.5452




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA