Project measure / variable:   JaxCC1   pct_center_OF

ID, description, units MPD:89038   pct_center_OF   percentage of total time in center of arena, 20 min test   [%]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means12.987   % 11.169   %
Median of the strain means11.732   % 10.499   %
SD of the strain means± 6.0907 ± 4.6457
Coefficient of variation (CV)0.469 0.4159
Min–max range of strain means3.1425   –   23.76   % 2.9137   –   19.504   %
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 56.6187 56.6187 1.2517 0.2645
strain 16 4245.4825 265.3427 5.8661 < 0.0001
sex:strain 16 1747.5167 109.2198 2.4146 0.0023
Residuals 215 9725.2164 45.2336


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 11.254 6.4013   8 2.2632 0.5688 4.3, 22.0 -0.28
CC002/UncJ m 8.84 3.9503   7 1.4931 0.4469 3.83, 15.89 -0.5
CC003/UncJ f 14.552 8.7295   5 3.9039 0.5999 6.07, 25.9 0.26
CC003/UncJ m 13.65 6.3338   4 3.1669 0.464 5.52, 20.77 0.53
CC004/TauUncJ f 12.864 4.3354   8 1.5328 0.337 9.36, 21.43 -0.02
CC004/TauUncJ m 19.504 4.3148   8 1.5255 0.2212 12.26, 24.3 1.79
CC006/TauUncJ f 23.235 2.408   4 1.204 0.1036 20.23, 25.95 1.68
CC006/TauUncJ m 9.4663 7.5483   8 2.6687 0.7974 1.28, 20.58 -0.37
CC009/UncJ f 3.1425 1.0028   8 0.35454 0.3191 1.88, 4.78 -1.62
CC009/UncJ m 6.62 3.4625   8 1.2242 0.523 1.68, 11.22 -0.98
CC010/GeniUncJ f 22.456 43.373   5 19.397 1.9315 0.55, 100.0 1.55
CC013/GeniUncJ f 19.068 5.6793   8 2.0079 0.2979 11.4, 29.11 1.0
CC013/GeniUncJ m 16.038 10.753   4 5.3766 0.6705 5.52, 29.54 1.05
CC017/UncJ f 8.9767 6.4815   6 2.6461 0.722 0.72, 18.15 -0.66
CC017/UncJ m 10.76 3.0873   5 1.3807 0.2869 7.98, 15.81 -0.09
CC018/UncJ f 18.324 6.6443   8 2.3491 0.3626 11.21, 31.64 0.88
CC018/UncJ m 17.811 5.3489   8 1.8911 0.3003 12.62, 25.26 1.43
CC019/TauUncJ f 10.072 6.6895   8 2.3651 0.6641 2.14, 22.62 -0.48
CC019/TauUncJ m 5.385 3.0121   8 1.0649 0.5593 1.99, 9.15 -1.25
CC024/GeniUncJ f 8.2986 7.4702   7 2.8235 0.9002 1.43, 21.85 -0.77
CC024/GeniUncJ m 7.9813 5.0686   8 1.792 0.6351 2.06, 14.96 -0.69
CC025/GeniUncJ f 6.235 4.6021   6 1.8788 0.7381 1.77, 14.52 -1.11
CC025/GeniUncJ m 16.224 12.802   10 4.0484 0.7891 2.02, 35.73 1.09
CC026/GeniUncJ f 12.211 4.6974   8 1.6608 0.3847 5.73, 18.75 -0.13
CC026/GeniUncJ m 14.545 3.9032   8 1.38 0.2684 8.0, 20.38 0.73
CC032/GeniUncJ f 9.0638 6.8025   8 2.4051 0.7505 2.76, 23.42 -0.64
CC032/GeniUncJ m 10.499 4.8991   8 1.7321 0.4666 4.54, 18.17 -0.14
CC040/TauUncJ f 13.389 6.6689   8 2.3578 0.4981 4.08, 25.72 0.07
CC040/TauUncJ m 9.8 5.0199   8 1.7748 0.5122 6.12, 21.78 -0.29
CC041/TauUncJ f 7.3638 3.1824   8 1.1251 0.4322 4.44, 12.3 -0.92
CC041/TauUncJ m 2.9137 2.6133   8 0.92393 0.8969 0.49, 8.03 -1.78
CC051/TauUncJ f 9.5038 5.7849   8 2.0453 0.6087 1.88, 17.92 -0.57
CC051/TauUncJ m 6.875 5.8262   10 1.8424 0.8474 1.29, 19.43 -0.92
CC068/TauUncJ f 23.76 21.132   5 9.4505 0.8894 3.22, 51.44 1.77
CC068/TauUncJ m 12.961 9.7285   8 3.4395 0.7506 0.92, 26.1 0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 11.2538 2.3779 15.9406 6.5669
CC002/UncJ m 8.84 2.542 13.8505 3.8295
CC003/UncJ f 14.552 3.0078 20.4805 8.6235
CC003/UncJ m 13.65 3.3628 20.2783 7.0217
CC004/TauUncJ f 12.8637 2.3779 17.5506 8.1769
CC004/TauUncJ m 19.5038 2.3779 24.1906 14.8169
CC006/TauUncJ f 23.235 3.3628 29.8633 16.6067
CC006/TauUncJ m 9.4663 2.3779 14.1531 4.7794
CC009/UncJ f 3.1425 2.3779 7.8294 -1.5444
CC009/UncJ m 6.62 2.3779 11.3069 1.9331
CC013/GeniUncJ f 19.0675 2.3779 23.7544 14.3806
CC013/GeniUncJ m 16.0375 3.3628 22.6658 9.4092
CC017/UncJ f 8.9767 2.7457 14.3886 3.5647
CC017/UncJ m 10.76 3.0078 16.6885 4.8315
CC018/UncJ f 18.3237 2.3779 23.0106 13.6369
CC018/UncJ m 17.8113 2.3779 22.4981 13.1244
CC019/TauUncJ f 10.0725 2.3779 14.7594 5.3856
CC019/TauUncJ m 5.385 2.3779 10.0719 0.6981
CC024/GeniUncJ f 8.2986 2.542 13.3091 3.2881
CC024/GeniUncJ m 7.9813 2.3779 12.6681 3.2944
CC025/GeniUncJ f 6.235 2.7457 11.647 0.823
CC025/GeniUncJ m 16.224 2.1268 20.4161 12.0319
CC026/GeniUncJ f 12.2113 2.3779 16.8981 7.5244
CC026/GeniUncJ m 14.545 2.3779 19.2319 9.8581
CC032/GeniUncJ f 9.0638 2.3779 13.7506 4.3769
CC032/GeniUncJ m 10.4988 2.3779 15.1856 5.8119
CC040/TauUncJ f 13.3888 2.3779 18.0756 8.7019
CC040/TauUncJ m 9.8 2.3779 14.4869 5.1131
CC041/TauUncJ f 7.3638 2.3779 12.0506 2.6769
CC041/TauUncJ m 2.9138 2.3779 7.6006 -1.7731
CC051/TauUncJ f 9.5038 2.3779 14.1906 4.8169
CC051/TauUncJ m 6.875 2.1268 11.0671 2.6829
CC068/TauUncJ f 23.76 3.0078 29.6885 17.8315
CC068/TauUncJ m 12.9613 2.3779 17.6481 8.2744


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 10.0469 1.7404 13.4773 6.6164
CC003/UncJ both 14.101 2.2558 18.5474 9.6546
CC004/TauUncJ both 16.1837 1.6814 19.4979 12.8696
CC006/TauUncJ both 16.3506 2.0593 20.4096 12.2917
CC009/UncJ both 4.8812 1.6814 8.1954 1.5671
CC013/GeniUncJ both 17.5525 2.0593 21.6115 13.4935
CC017/UncJ both 9.8683 2.0363 13.8819 5.8547
CC018/UncJ both 18.0675 1.6814 21.3816 14.7534
CC019/TauUncJ both 7.7288 1.6814 11.0429 4.4146
CC024/GeniUncJ both 8.1399 1.7404 11.5704 4.7095
CC025/GeniUncJ both 11.2295 1.7365 14.6523 7.8067
CC026/GeniUncJ both 13.3781 1.6814 16.6923 10.064
CC032/GeniUncJ both 9.7813 1.6814 13.0954 6.4671
CC040/TauUncJ both 11.5944 1.6814 14.9085 8.2802
CC041/TauUncJ both 5.1388 1.6814 8.4529 1.8246
CC051/TauUncJ both 8.1894 1.5951 11.3334 5.0453
CC068/TauUncJ both 18.3606 1.9171 22.1393 14.5819




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA