Project measure / variable:   JaxCC1   pct_corners_slope_OF

ID, description, units MPD:89033   pct_corners_slope_OF   percentage of total time in corners, slope, 20 min test    
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in corners, slope, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means-2.0574   None -0.75382   None
Median of the strain means-2.0038   None -1.8525   None
SD of the strain means± 4.4562 ± 4.1578
Coefficient of variation (CV)-2.1659 -5.5157
Min–max range of strain means-11.866   –   6.0062   None -8.88   –   9.041   None
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 163.5017 163.5017 2.7358 0.0996
strain 16 3618.735 226.1709 3.7844 < 0.0001
sex:strain 16 740.7465 46.2967 0.7747 0.7133
Residuals 215 12849.3406 59.7644


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 6.0062 7.2187   8 2.5522 1.2019 -4.89, 16.95 1.81
CC002/UncJ m 3.1643 10.508   7 3.9716 3.3208 -12.92, 16.45 0.94
CC003/UncJ f -11.866 7.6002   5 3.3989 -0.6405 -20.68, -2.57 -2.2
CC003/UncJ m -8.88 4.3248   4 2.1624 -0.487 -12.7, -2.8 -1.95
CC004/TauUncJ f -3.0787 2.1974   8 0.7769 -0.7137 -5.42, 0.28 -0.23
CC004/TauUncJ m -3.7612 4.8983   8 1.7318 -1.3023 -9.54, 3.41 -0.72
CC006/TauUncJ f -2.6975 2.5511   4 1.2755 -0.9457 -6.43, -0.96 -0.14
CC006/TauUncJ m 0.92 4.1324   8 1.461 4.4917 -5.08, 6.05 0.4
CC009/UncJ f 0.93125 7.2489   8 2.5629 7.784 -14.47, 6.32 0.67
CC009/UncJ m -1.8525 7.3937   8 2.6141 -3.9912 -15.88, 8.56 -0.26
CC010/GeniUncJ f -1.935 6.9859   4 3.4929 -3.6103 -9.53, 7.17 0.03
CC013/GeniUncJ f -2.0725 8.8497   8 3.1288 -4.27 -9.25, 18.24 0.0
CC013/GeniUncJ m -0.635 5.5889   4 2.7945 -8.8014 -7.98, 5.21 0.03
CC017/UncJ f -5.3783 11.297   6 4.6119 -2.1004 -22.15, 6.92 -0.75
CC017/UncJ m -3.936 9.76   5 4.3648 -2.4797 -17.18, 8.37 -0.77
CC018/UncJ f -5.4663 4.3877   8 1.5513 -0.8027 -11.19, -0.64 -0.76
CC018/UncJ m -4.1312 3.9818   8 1.4078 -0.9638 -9.64, 1.98 -0.81
CC019/TauUncJ f -4.3925 6.5481   8 2.3151 -1.4908 -10.86, 8.58 -0.52
CC019/TauUncJ m -1.8812 8.6126   8 3.045 -4.5781 -15.36, 9.46 -0.27
CC024/GeniUncJ f 0.52857 9.7495   7 3.685 18.4451 -13.98, 11.57 0.58
CC024/GeniUncJ m 6.3663 9.3332   8 3.2998 1.466 -6.16, 24.32 1.71
CC025/GeniUncJ f 1.7733 14.172   6 5.7855 7.9915 -12.07, 24.71 0.86
CC025/GeniUncJ m 9.041 12.448   10 3.9364 1.3768 -8.15, 30.29 2.36
CC026/GeniUncJ f -0.96625 3.9204   8 1.3861 -4.0573 -8.0, 5.53 0.24
CC026/GeniUncJ m 0.89125 3.063   8 1.0829 3.4367 -3.91, 5.09 0.4
CC032/GeniUncJ f -7.87 4.0793   8 1.4423 -0.5183 -13.01, -2.06 -1.3
CC032/GeniUncJ m -2.655 7.2002   8 2.5457 -2.7119 -14.56, 10.05 -0.46
CC040/TauUncJ f -6.2837 5.8105   8 2.0543 -0.9247 -16.09, 3.35 -0.95
CC040/TauUncJ m -2.3625 7.4082   8 2.6192 -3.1358 -16.4, 5.94 -0.39
CC041/TauUncJ f 4.3613 7.5211   8 2.6591 1.7245 -3.64, 17.91 1.44
CC041/TauUncJ m -1.6487 6.2005   8 2.1922 -3.7607 -9.29, 10.3 -0.22
CC051/TauUncJ f -1.235 4.3113   8 1.5243 -3.4909 -7.18, 7.36 0.18
CC051/TauUncJ m -1.952 7.0817   10 2.2394 -3.6279 -11.9, 8.01 -0.29
CC068/TauUncJ f 2.608 9.1817   5 4.1062 3.5206 -4.98, 18.56 1.05
CC068/TauUncJ m 0.4975 13.531   8 4.784 27.1984 -21.12, 20.16 0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 6.0062 2.7332 11.3936 0.6189
CC002/UncJ m 3.1643 2.9219 8.9236 -2.595
CC003/UncJ f -11.866 3.4573 -5.0515 -18.6805
CC003/UncJ m -8.88 3.8654 -1.2611 -16.4989
CC004/TauUncJ f -3.0787 2.7332 2.3086 -8.4661
CC004/TauUncJ m -3.7613 2.7332 1.6261 -9.1486
CC006/TauUncJ f -2.6975 3.8654 4.9214 -10.3164
CC006/TauUncJ m 0.92 2.7332 6.3074 -4.4674
CC009/UncJ f 0.9313 2.7332 6.3186 -4.4561
CC009/UncJ m -1.8525 2.7332 3.5349 -7.2399
CC013/GeniUncJ f -2.0725 2.7332 3.3149 -7.4599
CC013/GeniUncJ m -0.635 3.8654 6.9839 -8.2539
CC017/UncJ f -5.3783 3.1561 0.8425 -11.5991
CC017/UncJ m -3.936 3.4573 2.8785 -10.7505
CC018/UncJ f -5.4662 2.7332 -0.0789 -10.8536
CC018/UncJ m -4.1312 2.7332 1.2561 -9.5186
CC019/TauUncJ f -4.3925 2.7332 0.9949 -9.7799
CC019/TauUncJ m -1.8812 2.7332 3.5061 -7.2686
CC024/GeniUncJ f 0.5286 2.9219 6.2879 -5.2308
CC024/GeniUncJ m 6.3663 2.7332 11.7536 0.9789
CC025/GeniUncJ f 1.7733 3.1561 7.9941 -4.4475
CC025/GeniUncJ m 9.041 2.4447 13.8596 4.2224
CC026/GeniUncJ f -0.9663 2.7332 4.4211 -6.3536
CC026/GeniUncJ m 0.8912 2.7332 6.2786 -4.4961
CC032/GeniUncJ f -7.87 2.7332 -2.4826 -13.2574
CC032/GeniUncJ m -2.655 2.7332 2.7324 -8.0424
CC040/TauUncJ f -6.2837 2.7332 -0.8964 -11.6711
CC040/TauUncJ m -2.3625 2.7332 3.0249 -7.7499
CC041/TauUncJ f 4.3613 2.7332 9.7486 -1.0261
CC041/TauUncJ m -1.6487 2.7332 3.7386 -7.0361
CC051/TauUncJ f -1.235 2.7332 4.1524 -6.6224
CC051/TauUncJ m -1.952 2.4447 2.8666 -6.7706
CC068/TauUncJ f 2.608 3.4573 9.4225 -4.2065
CC068/TauUncJ m 0.4975 2.7332 5.8849 -4.8899


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 4.5853 2.0005 8.5284 0.6421
CC003/UncJ both -10.373 2.593 -5.2621 -15.4839
CC004/TauUncJ both -3.42 1.9327 0.3894 -7.2294
CC006/TauUncJ both -0.8888 2.367 3.7768 -5.5543
CC009/UncJ both -0.4606 1.9327 3.3488 -4.2701
CC013/GeniUncJ both -1.3537 2.367 3.3118 -6.0193
CC017/UncJ both -4.6572 2.3406 -0.0437 -9.2706
CC018/UncJ both -4.7987 1.9327 -0.9893 -8.6082
CC019/TauUncJ both -3.1369 1.9327 0.6726 -6.9463
CC024/GeniUncJ both 3.4474 2.0005 7.3906 -0.4957
CC025/GeniUncJ both 5.4072 1.9961 9.3415 1.4728
CC026/GeniUncJ both -0.0375 1.9327 3.7719 -3.8469
CC032/GeniUncJ both -5.2625 1.9327 -1.4531 -9.0719
CC040/TauUncJ both -4.3231 1.9327 -0.5137 -8.1326
CC041/TauUncJ both 1.3563 1.9327 5.1657 -2.4532
CC051/TauUncJ both -1.5935 1.8335 2.0204 -5.2074
CC068/TauUncJ both 1.5528 2.2036 5.8962 -2.7907




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA