Phenotype measure:   JaxCC1   pct_corners_habit_OF

ID, description, units MPD:89032   pct_corners_habit_OF   percentage of total time in corners, habituation ratio, 20 min test   [%]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in corners, habituation ratio, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means-2.0766   % -0.98442   %
Median of the strain means-2.1362   % -1.816   %
SD of the strain means± 4.4499 ± 4.3862
Coefficient of variation (CV)-2.1429 -4.4557
Min–max range of strain means-11.602   –   6.515   % -9.97   –   10.353   %
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 126.8883 126.8883 2.0401 0.1546
strain 16 3808.7187 238.0449 3.8273 < 0.0001
sex:strain 16 865.4917 54.0932 0.8697 0.6049
Residuals 215 13372.1872 62.1962


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 6.515 8.1198   8 2.8708 1.2463 -5.89, 19.28 1.93
CC002/UncJ m 2.83 11.174   7 4.2233 3.9484 -14.43, 16.13 0.87
CC003/UncJ f -11.602 6.6185   5 2.9599 -0.5705 -19.71, -2.32 -2.14
CC003/UncJ m -9.97 4.5179   4 2.2589 -0.4531 -13.72, -3.47 -2.05
CC004/TauUncJ f -3.285 2.9552   8 1.0448 -0.8996 -6.5, 1.33 -0.27
CC004/TauUncJ m -3.5825 5.2183   8 1.8449 -1.4566 -9.62, 3.6 -0.59
CC006/TauUncJ f -2.675 3.0832   4 1.5416 -1.1526 -7.21, -0.56 -0.13
CC006/TauUncJ m 0.80875 4.4369   8 1.5687 5.4862 -5.69, 6.37 0.41
CC009/UncJ f 0.4725 7.2887   8 2.577 15.4259 -14.22, 6.87 0.57
CC009/UncJ m -2.1425 7.7665   8 2.7459 -3.625 -15.8, 10.07 -0.26
CC010/GeniUncJ f -1.8725 7.7984   4 3.8992 -4.1647 -11.13, 7.87 0.05
CC013/GeniUncJ f -2.4 7.7316   8 2.7335 -3.2215 -10.14, 14.17 -0.07
CC013/GeniUncJ m -1.4975 6.5013   4 3.2506 -4.3414 -10.71, 3.92 -0.12
CC017/UncJ f -5.5 11.353   6 4.6348 -2.0642 -22.84, 5.97 -0.77
CC017/UncJ m -3.246 8.7748   5 3.9242 -2.7033 -15.7, 6.29 -0.52
CC018/UncJ f -5.9125 3.7004   8 1.3083 -0.6259 -11.09, -1.11 -0.86
CC018/UncJ m -5.2412 4.556   8 1.6108 -0.8693 -11.0, 1.19 -0.97
CC019/TauUncJ f -4.19 7.6636   8 2.7095 -1.829 -13.03, 10.24 -0.47
CC019/TauUncJ m -1.95 8.8352   8 3.1237 -4.5309 -14.91, 10.09 -0.22
CC024/GeniUncJ f 0.49286 8.3429   7 3.1533 16.9275 -11.27, 7.28 0.58
CC024/GeniUncJ m 5.11 10.838   8 3.8319 2.121 -7.84, 27.44 1.39
CC025/GeniUncJ f 0.90667 13.015   6 5.3134 14.3548 -10.63, 20.53 0.67
CC025/GeniUncJ m 10.353 12.859   10 4.0663 1.242 -7.21, 31.9 2.58
CC026/GeniUncJ f -0.6075 4.0661   8 1.4376 -6.6932 -7.87, 5.9 0.33
CC026/GeniUncJ m 0.145 3.1509   8 1.114 21.73 -4.26, 5.58 0.26
CC032/GeniUncJ f -8.095 4.0072   8 1.4168 -0.495 -12.8, -1.02 -1.35
CC032/GeniUncJ m -2.8425 8.2628   8 2.9213 -2.9069 -15.73, 9.12 -0.42
CC040/TauUncJ f -5.4287 4.9992   8 1.7675 -0.9209 -12.2, 3.49 -0.75
CC040/TauUncJ m -2.5312 7.7512   8 2.7405 -3.0622 -17.02, 6.29 -0.35
CC041/TauUncJ f 5.3563 7.6055   8 2.6889 1.4199 -3.06, 19.89 1.67
CC041/TauUncJ m -1.8025 7.6315   8 2.6981 -4.2338 -13.36, 11.47 -0.19
CC051/TauUncJ f -0.72 5.5813   8 1.9733 -7.7518 -8.11, 10.9 0.3
CC051/TauUncJ m -1.816 6.8989   10 2.1816 -3.799 -10.56, 8.03 -0.19
CC068/TauUncJ f 1.166 8.3612   5 3.7393 7.1709 -6.63, 14.93 0.73
CC068/TauUncJ m 0.64 13.794   8 4.8768 21.5528 -22.72, 20.93 0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 6.515 2.7883 12.0109 1.0191
CC002/UncJ m 2.83 2.9808 8.7053 -3.0453
CC003/UncJ f -11.602 3.5269 -4.6502 -18.5538
CC003/UncJ m -9.97 3.9432 -2.1977 -17.7423
CC004/TauUncJ f -3.285 2.7883 2.2109 -8.7809
CC004/TauUncJ m -3.5825 2.7883 1.9134 -9.0784
CC006/TauUncJ f -2.675 3.9432 5.0973 -10.4473
CC006/TauUncJ m 0.8088 2.7883 6.3046 -4.6871
CC009/UncJ f 0.4725 2.7883 5.9684 -5.0234
CC009/UncJ m -2.1425 2.7883 3.3534 -7.6384
CC013/GeniUncJ f -2.4 2.7883 3.0959 -7.8959
CC013/GeniUncJ m -1.4975 3.9432 6.2748 -9.2698
CC017/UncJ f -5.5 3.2196 0.8461 -11.8461
CC017/UncJ m -3.246 3.5269 3.7058 -10.1978
CC018/UncJ f -5.9125 2.7883 -0.4166 -11.4084
CC018/UncJ m -5.2412 2.7883 0.2546 -10.7371
CC019/TauUncJ f -4.19 2.7883 1.3059 -9.6859
CC019/TauUncJ m -1.95 2.7883 3.5459 -7.4459
CC024/GeniUncJ f 0.4929 2.9808 6.3682 -5.3825
CC024/GeniUncJ m 5.11 2.7883 10.6059 -0.3859
CC025/GeniUncJ f 0.9067 3.2196 7.2528 -5.4394
CC025/GeniUncJ m 10.353 2.4939 15.2687 5.4373
CC026/GeniUncJ f -0.6075 2.7883 4.8884 -6.1034
CC026/GeniUncJ m 0.145 2.7883 5.6409 -5.3509
CC032/GeniUncJ f -8.095 2.7883 -2.5991 -13.5909
CC032/GeniUncJ m -2.8425 2.7883 2.6534 -8.3384
CC040/TauUncJ f -5.4287 2.7883 0.0671 -10.9246
CC040/TauUncJ m -2.5312 2.7883 2.9646 -8.0271
CC041/TauUncJ f 5.3563 2.7883 10.8521 -0.1396
CC041/TauUncJ m -1.8025 2.7883 3.6934 -7.2984
CC051/TauUncJ f -0.72 2.7883 4.7759 -6.2159
CC051/TauUncJ m -1.816 2.4939 3.0997 -6.7317
CC068/TauUncJ f 1.166 3.5269 8.1178 -5.7858
CC068/TauUncJ m 0.64 2.7883 6.1359 -4.8559


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 4.6725 2.0408 8.6951 0.6499
CC003/UncJ both -10.786 2.6452 -5.5722 -15.9998
CC004/TauUncJ both -3.4337 1.9716 0.4524 -7.3199
CC006/TauUncJ both -0.9331 2.4147 3.8264 -5.6927
CC009/UncJ both -0.835 1.9716 3.0512 -4.7212
CC013/GeniUncJ both -1.9487 2.4147 2.8108 -6.7083
CC017/UncJ both -4.373 2.3877 0.3334 -9.0794
CC018/UncJ both -5.5769 1.9716 -1.6907 -9.463
CC019/TauUncJ both -3.07 1.9716 0.8162 -6.9562
CC024/GeniUncJ both 2.8014 2.0408 6.824 -1.2211
CC025/GeniUncJ both 5.6298 2.0363 9.6435 1.6162
CC026/GeniUncJ both -0.2313 1.9716 3.6549 -4.1174
CC032/GeniUncJ both -5.4687 1.9716 -1.5826 -9.3549
CC040/TauUncJ both -3.98 1.9716 -0.0938 -7.8662
CC041/TauUncJ both 1.7769 1.9716 5.663 -2.1093
CC051/TauUncJ both -1.268 1.8704 2.4187 -4.9547
CC068/TauUncJ both 0.903 2.248 5.3339 -3.5279




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA