Phenotype measure:   JaxCC1   pct_corners_OF

ID, description, units MPD:89031   pct_corners_OF   percentage of total time in corners of arena, 20 min test   [s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - percentage of total time in corners of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means50.88   s 50.99   s
Median of the strain means48.219   s 53.57   s
SD of the strain means± 14.18 ± 10.833
Coefficient of variation (CV)0.2787 0.2125
Min–max range of strain means29.805   –   86.54   s 33.205   –   73.39   s
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 316.3665 316.3665 2.1117 0.1476
strain 16 24239.082 1514.9426 10.112 < 0.0001
sex:strain 16 4791.6015 299.4751 1.999 0.0144
Residuals 215 32210.4482 149.816


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 59.7 9.9478   8 3.5171 0.1666 46.03, 77.09 0.62
CC002/UncJ m 56.14 11.855   7 4.4806 0.2111 42.86, 71.23 0.48
CC003/UncJ f 44.624 12.269   5 5.4869 0.2749 26.22, 59.93 -0.44
CC003/UncJ m 43.293 12.061   4 6.0307 0.2786 30.8, 59.14 -0.71
CC004/TauUncJ f 36.067 3.2331   8 1.1431 0.0896 31.47, 39.83 -1.04
CC004/TauUncJ m 33.205 4.5917   8 1.6234 0.1383 25.62, 39.81 -1.64
CC006/TauUncJ f 29.805 5.1287   4 2.5644 0.1721 24.18, 35.23 -1.49
CC006/TauUncJ m 61.09 17.689   8 6.2541 0.2896 40.71, 86.35 0.93
CC009/UncJ f 72.93 9.4101   8 3.327 0.129 56.48, 84.73 1.55
CC009/UncJ m 60.47 9.3243   8 3.2966 0.1542 51.38, 76.16 0.88
CC010/GeniUncJ f 86.54 5.6154   4 2.8077 0.0649 79.16, 92.82 2.51
CC013/GeniUncJ f 37.096 9.9575   8 3.5205 0.2684 20.01, 51.08 -0.97
CC013/GeniUncJ m 39.127 9.6129   4 4.8065 0.2457 28.09, 47.56 -1.09
CC017/UncJ f 50.79 19.49   6 7.9568 0.3837 32.57, 79.89 -0.01
CC017/UncJ m 46.336 7.2293   5 3.233 0.156 37.9, 54.78 -0.43
CC018/UncJ f 37.555 6.0483   8 2.1384 0.1611 27.86, 44.9 -0.94
CC018/UncJ m 36.933 4.2324   8 1.4964 0.1146 31.8, 44.74 -1.3
CC019/TauUncJ f 51.62 14.687   8 5.1926 0.2845 29.71, 77.9 0.05
CC019/TauUncJ m 57.85 15.636   8 5.5281 0.2703 36.41, 79.33 0.63
CC024/GeniUncJ f 47.57 18.011   7 6.8075 0.3786 23.52, 68.46 -0.23
CC024/GeniUncJ m 62.24 12.944   8 4.5765 0.208 44.39, 80.41 1.04
CC025/GeniUncJ f 52.12 12.91   6 5.2703 0.2477 40.17, 69.7 0.09
CC025/GeniUncJ m 56.73 18.612   10 5.8857 0.3281 28.71, 80.87 0.53
CC026/GeniUncJ f 47.26 6.0256   8 2.1304 0.1275 39.23, 54.46 -0.26
CC026/GeniUncJ m 41.294 5.3744   8 1.9001 0.1301 33.42, 49.75 -0.89
CC032/GeniUncJ f 48.869 7.9954   8 2.8268 0.1636 35.48, 59.86 -0.14
CC032/GeniUncJ m 44.652 8.4289   8 2.9801 0.1888 33.39, 56.7 -0.58
CC040/TauUncJ f 44.985 11.402   8 4.0311 0.2535 28.72, 65.13 -0.42
CC040/TauUncJ m 53.57 10.714   8 3.788 0.2 30.44, 64.91 0.24
CC041/TauUncJ f 69.88 13.949   8 4.9317 0.1996 56.79, 92.66 1.34
CC041/TauUncJ m 73.39 10.965   8 3.8766 0.1494 57.43, 89.93 2.07
CC051/TauUncJ f 55.63 14.161   8 5.0066 0.2546 41.57, 81.78 0.33
CC051/TauUncJ m 56.31 16.296   10 5.1532 0.2894 39.03, 83.2 0.49
CC068/TauUncJ f 42.88 22.233   5 9.9431 0.5185 18.11, 73.03 -0.56
CC068/TauUncJ m 44.186 12.395   8 4.3822 0.2805 29.77, 60.96 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 59.7025 4.3275 68.2322 51.1728
CC002/UncJ m 56.1443 4.6263 65.2629 47.0257
CC003/UncJ f 44.624 5.4739 55.4133 33.8347
CC003/UncJ m 43.2925 6.12 55.3553 31.2297
CC004/TauUncJ f 36.0675 4.3275 44.5972 27.5378
CC004/TauUncJ m 33.205 4.3275 41.7347 24.6753
CC006/TauUncJ f 29.805 6.12 41.8678 17.7422
CC006/TauUncJ m 61.085 4.3275 69.6147 52.5553
CC009/UncJ f 72.9312 4.3275 81.461 64.4015
CC009/UncJ m 60.4687 4.3275 68.9985 51.939
CC013/GeniUncJ f 37.0962 4.3275 45.626 28.5665
CC013/GeniUncJ m 39.1275 6.12 51.1903 27.0647
CC017/UncJ f 50.795 4.9969 60.6443 40.9457
CC017/UncJ m 46.336 5.4739 57.1253 35.5467
CC018/UncJ f 37.555 4.3275 46.0847 29.0253
CC018/UncJ m 36.9325 4.3275 45.4622 28.4028
CC019/TauUncJ f 51.6237 4.3275 60.1535 43.094
CC019/TauUncJ m 57.8475 4.3275 66.3772 49.3178
CC024/GeniUncJ f 47.57 4.6263 56.6886 38.4514
CC024/GeniUncJ m 62.2362 4.3275 70.766 53.7065
CC025/GeniUncJ f 52.12 4.9969 61.9693 42.2707
CC025/GeniUncJ m 56.731 3.8706 64.3602 49.1018
CC026/GeniUncJ f 47.26 4.3275 55.7897 38.7303
CC026/GeniUncJ m 41.2937 4.3275 49.8235 32.764
CC032/GeniUncJ f 48.8687 4.3275 57.3985 40.339
CC032/GeniUncJ m 44.6525 4.3275 53.1822 36.1228
CC040/TauUncJ f 44.985 4.3275 53.5147 36.4553
CC040/TauUncJ m 53.5687 4.3275 62.0985 45.039
CC041/TauUncJ f 69.8775 4.3275 78.4072 61.3478
CC041/TauUncJ m 73.3912 4.3275 81.921 64.8615
CC051/TauUncJ f 55.6275 4.3275 64.1572 47.0978
CC051/TauUncJ m 56.314 3.8706 63.9432 48.6848
CC068/TauUncJ f 42.88 5.4739 53.6693 32.0907
CC068/TauUncJ m 44.1862 4.3275 52.716 35.6565


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 57.9234 3.1674 64.1665 51.6803
CC003/UncJ both 43.9582 4.1054 52.0502 35.8663
CC004/TauUncJ both 34.6362 3.06 40.6677 28.6048
CC006/TauUncJ both 45.445 3.7477 52.8319 38.0581
CC009/UncJ both 66.7 3.06 72.7314 60.6686
CC013/GeniUncJ both 38.1119 3.7477 45.4988 30.7249
CC017/UncJ both 48.5655 3.7058 55.8699 41.2611
CC018/UncJ both 37.2437 3.06 43.2752 31.2123
CC019/TauUncJ both 54.7356 3.06 60.767 48.7042
CC024/GeniUncJ both 54.9031 3.1674 61.1462 48.66
CC025/GeniUncJ both 54.4255 3.1603 60.6547 48.1963
CC026/GeniUncJ both 44.2769 3.06 50.3083 38.2455
CC032/GeniUncJ both 46.7606 3.06 52.792 40.7292
CC040/TauUncJ both 49.2769 3.06 55.3083 43.2455
CC041/TauUncJ both 71.6344 3.06 77.6658 65.603
CC051/TauUncJ both 55.9707 2.903 61.6926 50.2489
CC068/TauUncJ both 43.5331 3.4889 50.41 36.6563




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA