Phenotype measure:   JaxCC1   corners_perm_OF

ID, description, units MPD:89030   corners_perm_OF   permanence time in corners of arena, 20 min test   [s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

JaxCC1 - permanence time in corners of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means610.6   s 611.9   s
Median of the strain means578.6   s 642.8   s
SD of the strain means± 170.1 ± 130.0
Coefficient of variation (CV)0.2786 0.2125
Min–max range of strain means357.7   –   1038.0   s 398.4   –   880.6   s
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 45530.7139 45530.7139 2.1104 0.1478
strain 16 3490339.3103 218146.2069 10.1114 < 0.0001
sex:strain 16 690044.1398 43127.7587 1.999 0.0144
Residuals 215 4638464.7577 21574.2547


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 716.4 119.4   8 42.203 0.1666 552.4, 925.1 0.62
CC002/UncJ m 673.7 142.3   7 53.77 0.2112 514.3, 854.8 0.48
CC003/UncJ f 535.5 147.3   5 65.86 0.275 314.6, 719.2 -0.44
CC003/UncJ m 519.5 144.7   4 72.37 0.2786 369.6, 709.7 -0.71
CC004/TauUncJ f 432.8 38.797   8 13.717 0.0896 377.6, 477.9 -1.05
CC004/TauUncJ m 398.4 55.11   8 19.483 0.1383 307.4, 477.7 -1.64
CC006/TauUncJ f 357.7 61.57   4 30.787 0.1721 290.1, 422.8 -1.49
CC006/TauUncJ m 733.1 212.3   8 75.06 0.2896 488.5, 1036.0 0.93
CC009/UncJ f 875.2 113.0   8 39.946 0.1291 677.7, 1017.0 1.56
CC009/UncJ m 725.6 111.9   8 39.557 0.1542 616.5, 913.9 0.87
CC010/GeniUncJ f 1038.0 67.46   4 33.73 0.065 949.9, 1114.0 2.51
CC013/GeniUncJ f 445.2 119.5   8 42.254 0.2685 240.1, 613.0 -0.97
CC013/GeniUncJ m 469.5 115.4   4 57.68 0.2457 337.1, 570.7 -1.1
CC017/UncJ f 609.6 233.9   6 95.48 0.3837 390.9, 958.7 -0.01
CC017/UncJ m 556.0 86.73   5 38.787 0.156 454.8, 657.3 -0.43
CC018/UncJ f 450.7 72.59   8 25.666 0.1611 334.3, 538.8 -0.94
CC018/UncJ m 443.2 50.8   8 17.959 0.1146 381.6, 536.9 -1.3
CC019/TauUncJ f 619.5 176.2   8 62.31 0.2845 356.5, 934.8 0.05
CC019/TauUncJ m 694.2 187.6   8 66.34 0.2703 436.9, 952.0 0.63
CC024/GeniUncJ f 570.8 216.2   7 81.7 0.3787 282.2, 821.5 -0.23
CC024/GeniUncJ m 746.8 155.3   8 54.92 0.208 532.7, 964.9 1.04
CC025/GeniUncJ f 625.5 154.9   6 63.23 0.2476 482.1, 836.4 0.09
CC025/GeniUncJ m 680.8 223.4   10 70.63 0.3281 344.5, 970.4 0.53
CC026/GeniUncJ f 567.1 72.33   8 25.573 0.1275 470.7, 653.5 -0.26
CC026/GeniUncJ m 495.5 64.49   8 22.8 0.1301 401.1, 597.0 -0.9
CC032/GeniUncJ f 586.4 95.93   8 33.917 0.1636 425.8, 718.3 -0.14
CC032/GeniUncJ m 535.8 101.1   8 35.76 0.1888 400.7, 680.4 -0.59
CC040/TauUncJ f 539.8 136.8   8 48.38 0.2535 344.6, 781.6 -0.42
CC040/TauUncJ m 642.8 128.6   8 45.452 0.2 365.3, 778.9 0.24
CC041/TauUncJ f 838.6 167.4   8 59.19 0.1997 681.5, 1112.0 1.34
CC041/TauUncJ m 880.6 131.5   8 46.477 0.1493 689.2, 1079.0 2.07
CC051/TauUncJ f 667.5 169.9   8 60.09 0.2546 498.8, 981.4 0.33
CC051/TauUncJ m 675.8 195.5   10 61.84 0.2894 468.4, 998.4 0.49
CC068/TauUncJ f 514.6 266.8   5 119.3 0.5185 217.3, 876.3 -0.56
CC068/TauUncJ m 530.2 148.7   8 52.58 0.2805 357.3, 731.5 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 716.4375 51.9305 818.7957 614.0793
CC002/UncJ m 673.7286 55.5161 783.1541 564.3031
CC003/UncJ f 535.48 65.6875 664.954 406.006
CC003/UncJ m 519.525 73.4409 664.2813 374.7687
CC004/TauUncJ f 432.8 51.9305 535.1582 330.4418
CC004/TauUncJ m 398.4375 51.9305 500.7957 296.0793
CC006/TauUncJ f 357.675 73.4409 502.4313 212.9187
CC006/TauUncJ m 733.0625 51.9305 835.4207 630.7043
CC009/UncJ f 875.1875 51.9305 977.5457 772.8293
CC009/UncJ m 725.6125 51.9305 827.9707 623.2543
CC013/GeniUncJ f 445.1625 51.9305 547.5207 342.8043
CC013/GeniUncJ m 469.525 73.4409 614.2813 324.7687
CC017/UncJ f 609.55 59.9642 727.743 491.357
CC017/UncJ m 556.04 65.6875 685.514 426.566
CC018/UncJ f 450.6625 51.9305 553.0207 348.3043
CC018/UncJ m 443.1875 51.9305 545.5457 340.8293
CC019/TauUncJ f 619.4875 51.9305 721.8457 517.1293
CC019/TauUncJ m 694.175 51.9305 796.5332 591.8168
CC024/GeniUncJ f 570.8286 55.5161 680.2541 461.4031
CC024/GeniUncJ m 746.8125 51.9305 849.1707 644.4543
CC025/GeniUncJ f 625.4667 59.9642 743.6597 507.2736
CC025/GeniUncJ m 680.76 46.4481 772.3119 589.2081
CC026/GeniUncJ f 567.1125 51.9305 669.4707 464.7543
CC026/GeniUncJ m 495.5375 51.9305 597.8957 393.1793
CC032/GeniUncJ f 586.425 51.9305 688.7832 484.0668
CC032/GeniUncJ m 535.8125 51.9305 638.1707 433.4543
CC040/TauUncJ f 539.825 51.9305 642.1832 437.4668
CC040/TauUncJ m 642.8375 51.9305 745.1957 540.4793
CC041/TauUncJ f 838.5625 51.9305 940.9207 736.2043
CC041/TauUncJ m 880.625 51.9305 982.9832 778.2668
CC051/TauUncJ f 667.525 51.9305 769.8832 565.1668
CC051/TauUncJ m 675.78 46.4481 767.3319 584.2281
CC068/TauUncJ f 514.56 65.6875 644.034 385.086
CC068/TauUncJ m 530.25 51.9305 632.6082 427.8918


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 695.083 38.0093 770.0016 620.1645
CC003/UncJ both 527.5025 49.2656 624.608 430.397
CC004/TauUncJ both 415.6187 36.7204 487.9969 343.2406
CC006/TauUncJ both 545.3687 44.9732 634.0135 456.724
CC009/UncJ both 800.4 36.7204 872.7782 728.0218
CC013/GeniUncJ both 457.3438 44.9732 545.9885 368.699
CC017/UncJ both 582.795 44.4707 670.4493 495.1407
CC018/UncJ both 446.925 36.7204 519.3032 374.5468
CC019/TauUncJ both 656.8313 36.7204 729.2094 584.4531
CC024/GeniUncJ both 658.8205 38.0093 733.7391 583.902
CC025/GeniUncJ both 653.1133 37.9247 727.8652 578.3615
CC026/GeniUncJ both 531.325 36.7204 603.7032 458.9468
CC032/GeniUncJ both 561.1187 36.7204 633.4969 488.7406
CC040/TauUncJ both 591.3313 36.7204 663.7094 518.9531
CC041/TauUncJ both 859.5938 36.7204 931.9719 787.2156
CC051/TauUncJ both 671.6525 34.8361 740.3165 602.9885
CC068/TauUncJ both 522.405 41.8677 604.9288 439.8812




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA