Phenotype measure:   JaxCC1   periphery_perm_OF

ID, description, units MPD:89028   periphery_perm_OF   permanence time in periphery of arena, 20 min test   [s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - permanence time in periphery of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means1057.0   s 1066.0   s
Median of the strain means1072.0   s 1074.0   s
SD of the strain means± 72.36 ± 55.86
Coefficient of variation (CV)0.0685 0.0524
Min–max range of strain means914.8   –   1163.0   s 965.9   –   1165.0   s
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8182.7183 8182.7183 1.2563 0.2636
strain 16 611746.796 38234.1747 5.87 < 0.0001
sex:strain 16 251755.9075 15734.7442 2.4157 0.0023
Residuals 215 1400405.188 6513.5125


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 1065.0 76.86   8 27.172 0.0722 936.0, 1148.0 0.11
CC002/UncJ m 1094.0 47.311   7 17.882 0.0432 1010.0, 1154.0 0.5
CC003/UncJ f 1026.0 104.6   5 46.789 0.102 889.5, 1127.0 -0.43
CC003/UncJ m 1036.0 76.16   4 38.081 0.0735 950.7, 1134.0 -0.54
CC004/TauUncJ f 1046.0 52.12   8 18.426 0.0498 942.7, 1088.0 -0.15
CC004/TauUncJ m 965.9 51.8   8 18.314 0.0536 908.4, 1053.0 -1.79
CC006/TauUncJ f 921.1 28.79   4 14.395 0.0313 888.6, 957.0 -1.88
CC006/TauUncJ m 1087.0 90.65   8 32.05 0.0834 953.2, 1185.0 0.37
CC009/UncJ f 1162.0 12.045   8 4.2584 0.0104 1142.0, 1177.0 1.45
CC009/UncJ m 1121.0 41.566   8 14.696 0.0371 1065.0, 1180.0 0.98
CC010/GeniUncJ f 1163.0 19.923   4 9.9614 0.0171 1152.0, 1193.0 1.46
CC013/GeniUncJ f 971.1 68.08   8 24.072 0.0701 850.7, 1063.0 -1.19
CC013/GeniUncJ m 1008.0 129.0   4 64.52 0.1281 845.6, 1134.0 -1.04
CC017/UncJ f 1092.0 77.85   6 31.782 0.0713 982.1, 1192.0 0.48
CC017/UncJ m 1071.0 37.09   5 16.587 0.0346 1010.0, 1104.0 0.09
CC018/UncJ f 980.2 79.91   8 28.253 0.0815 820.2, 1066.0 -1.06
CC018/UncJ m 986.1 64.03   8 22.639 0.0649 896.9, 1048.0 -1.43
CC019/TauUncJ f 1079.0 80.2   8 28.356 0.0743 928.4, 1174.0 0.3
CC019/TauUncJ m 1136.0 36.158   8 12.784 0.0318 1090.0, 1176.0 1.25
CC024/GeniUncJ f 1101.0 89.65   7 33.885 0.0815 937.9, 1183.0 0.61
CC024/GeniUncJ m 1104.0 60.91   8 21.534 0.0552 1020.0, 1175.0 0.68
CC025/GeniUncJ f 1125.0 55.12   6 22.502 0.049 1026.0, 1179.0 0.94
CC025/GeniUncJ m 1005.0 153.7   10 48.602 0.1529 771.2, 1176.0 -1.09
CC026/GeniUncJ f 1053.0 56.27   8 19.894 0.0534 974.8, 1131.0 -0.06
CC026/GeniUncJ m 1026.0 46.778   8 16.539 0.0456 955.6, 1104.0 -0.72
CC032/GeniUncJ f 1091.0 81.63   8 28.861 0.0748 919.0, 1167.0 0.47
CC032/GeniUncJ m 1074.0 58.8   8 20.789 0.0547 981.9, 1146.0 0.14
CC040/TauUncJ f 1039.0 80.11   8 28.322 0.0771 891.2, 1151.0 -0.25
CC040/TauUncJ m 1082.0 60.3   8 21.318 0.0557 938.8, 1127.0 0.29
CC041/TauUncJ f 1112.0 38.277   8 13.533 0.0344 1052.0, 1147.0 0.76
CC041/TauUncJ m 1165.0 31.165   8 11.019 0.0267 1104.0, 1194.0 1.77
CC051/TauUncJ f 1086.0 69.27   8 24.491 0.0638 985.1, 1177.0 0.4
CC051/TauUncJ m 1118.0 69.91   10 22.108 0.0626 966.8, 1184.0 0.93
CC068/TauUncJ f 914.8 253.6   5 113.4 0.2772 582.7, 1161.0 -1.97
CC068/TauUncJ m 1044.0 116.6   8 41.24 0.1117 886.8, 1189.0 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 1065.025 28.534 1121.2672 1008.7828
CC002/UncJ m 1094.0 30.5041 1154.1254 1033.8746
CC003/UncJ f 1025.52 36.093 1096.6614 954.3786
CC003/UncJ m 1036.175 40.3532 1115.7135 956.6365
CC004/TauUncJ f 1045.65 28.534 1101.8922 989.4078
CC004/TauUncJ m 965.95 28.534 1022.1922 909.7078
CC006/TauUncJ f 921.125 40.3532 1000.6635 841.5865
CC006/TauUncJ m 1086.525 28.534 1142.7672 1030.2828
CC009/UncJ f 1162.25 28.534 1218.4922 1106.0078
CC009/UncJ m 1120.625 28.534 1176.8672 1064.3828
CC013/GeniUncJ f 971.075 28.534 1027.3172 914.8328
CC013/GeniUncJ m 1007.6 40.3532 1087.1385 928.0615
CC017/UncJ f 1092.35 32.9482 1157.2929 1027.4071
CC017/UncJ m 1070.8 36.093 1141.9414 999.6586
CC018/UncJ f 980.2125 28.534 1036.4547 923.9703
CC018/UncJ m 986.075 28.534 1042.3172 929.8328
CC019/TauUncJ f 1079.0625 28.534 1135.3047 1022.8203
CC019/TauUncJ m 1135.5 28.534 1191.7422 1079.2578
CC024/GeniUncJ f 1100.5571 30.5041 1160.6826 1040.4317
CC024/GeniUncJ m 1104.0 28.534 1160.2422 1047.7578
CC025/GeniUncJ f 1125.1667 32.9482 1190.1096 1060.2238
CC025/GeniUncJ m 1005.41 25.5216 1055.7146 955.1054
CC026/GeniUncJ f 1053.275 28.534 1109.5172 997.0328
CC026/GeniUncJ m 1025.525 28.534 1081.7672 969.2828
CC032/GeniUncJ f 1091.25 28.534 1147.4922 1035.0078
CC032/GeniUncJ m 1073.9875 28.534 1130.2297 1017.7453
CC040/TauUncJ f 1039.4125 28.534 1095.6547 983.1703
CC040/TauUncJ m 1082.475 28.534 1138.7172 1026.2328
CC041/TauUncJ f 1111.625 28.534 1167.8672 1055.3828
CC041/TauUncJ m 1165.125 28.534 1221.3672 1108.8828
CC051/TauUncJ f 1085.8125 28.534 1142.0547 1029.5703
CC051/TauUncJ m 1117.58 25.5216 1167.8846 1067.2754
CC068/TauUncJ f 914.84 36.093 985.9814 843.6986
CC068/TauUncJ m 1044.3625 28.534 1100.6047 988.1203


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 1079.5125 20.8847 1120.6776 1038.3474
CC003/UncJ both 1030.8475 27.0697 1084.2035 977.4915
CC004/TauUncJ both 1005.8 20.1766 1045.5692 966.0308
CC006/TauUncJ both 1003.825 24.7112 1052.5322 955.1178
CC009/UncJ both 1141.4375 20.1766 1181.2067 1101.6683
CC013/GeniUncJ both 989.3375 24.7112 1038.0447 940.6303
CC017/UncJ both 1081.575 24.4351 1129.7379 1033.4121
CC018/UncJ both 983.1438 20.1766 1022.913 943.3745
CC019/TauUncJ both 1107.2813 20.1766 1147.0505 1067.512
CC024/GeniUncJ both 1102.2786 20.8847 1143.4436 1061.1135
CC025/GeniUncJ both 1065.2883 20.8383 1106.3618 1024.2148
CC026/GeniUncJ both 1039.4 20.1766 1079.1692 999.6308
CC032/GeniUncJ both 1082.6188 20.1766 1122.388 1042.8495
CC040/TauUncJ both 1060.9438 20.1766 1100.713 1021.1745
CC041/TauUncJ both 1138.375 20.1766 1178.1442 1098.6058
CC051/TauUncJ both 1101.6963 19.1412 1139.4247 1063.9678
CC068/TauUncJ both 979.6013 23.0048 1024.9452 934.2573




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA