Phenotype measure:   JaxCC1   whole_speed_OF

ID, description, units MPD:89020   whole_speed_OF   whole arena average speed, 20 min test   [cm/s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - whole arena average speed, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means2.6066   cm/s 2.4184   cm/s
Median of the strain means2.66   cm/s 2.24   cm/s
SD of the strain means± 1.4383 ± 1.2237
Coefficient of variation (CV)0.5518 0.506
Min–max range of strain means0.302   –   6.0275   cm/s 0.91125   –   4.5438   cm/s
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13.0316 13.0316 20.8962 < 0.0001
strain 16 378.7275 23.6705 37.9558 < 0.0001
sex:strain 16 27.1364 1.696 2.7196 0.0006
Residuals 215 134.0811 0.6236


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 2.0863 0.40848   8 0.14442 0.1958 1.49, 2.6 -0.36
CC002/UncJ m 2.24 0.60459   7 0.22851 0.2699 1.52, 3.42 -0.15
CC003/UncJ f 3.496 0.37327   5 0.16693 0.1068 3.18, 4.11 0.62
CC003/UncJ m 4.0025 1.1283   4 0.56414 0.2819 2.63, 5.34 1.29
CC004/TauUncJ f 6.0275 0.85021   8 0.30059 0.1411 4.97, 7.61 2.38
CC004/TauUncJ m 4.5438 0.68856   8 0.24344 0.1515 3.19, 5.58 1.74
CC006/TauUncJ f 3.105 0.848   4 0.424 0.2731 2.23, 3.9 0.35
CC006/TauUncJ m 2.0975 1.1431   8 0.40415 0.545 0.73, 3.96 -0.26
CC009/UncJ f 2.9688 1.2688   8 0.44857 0.4274 1.7, 5.42 0.25
CC009/UncJ m 3.8775 1.0529   8 0.37227 0.2715 2.74, 5.87 1.19
CC010/GeniUncJ f 0.302 0.23868   5 0.10674 0.7903 0.01, 0.53 -1.6
CC013/GeniUncJ f 2.8262 0.56702   8 0.20047 0.2006 1.77, 3.4 0.15
CC013/GeniUncJ m 3.19 1.289   4 0.64448 0.4041 1.88, 4.85 0.63
CC017/UncJ f 2.8717 1.162   6 0.47437 0.4046 1.47, 4.61 0.18
CC017/UncJ m 2.32 0.48109   5 0.21515 0.2074 1.76, 2.93 -0.08
CC018/UncJ f 3.0462 0.76431   8 0.27022 0.2509 1.61, 4.02 0.31
CC018/UncJ m 3.2362 0.91656   8 0.32405 0.2832 1.84, 4.57 0.67
CC019/TauUncJ f 2.53 0.79599   8 0.28142 0.3146 0.73, 3.29 -0.05
CC019/TauUncJ m 1.7012 0.63459   8 0.22436 0.373 1.03, 2.99 -0.59
CC024/GeniUncJ f 0.89571 0.20173   7 0.07625 0.2252 0.71, 1.24 -1.19
CC024/GeniUncJ m 0.985 0.61739   8 0.21828 0.6268 0.47, 2.25 -1.17
CC025/GeniUncJ f 2.45 1.5072   6 0.6153 0.6152 0.48, 3.91 -0.11
CC025/GeniUncJ m 1.019 0.92791   10 0.29343 0.9106 0.09, 2.72 -1.14
CC026/GeniUncJ f 5.4075 0.60921   8 0.21539 0.1127 4.89, 6.84 1.95
CC026/GeniUncJ m 4.335 0.53596   8 0.18949 0.1236 3.5, 5.07 1.57
CC032/GeniUncJ f 1.9587 0.57087   8 0.20183 0.2914 1.18, 2.95 -0.45
CC032/GeniUncJ m 1.68 0.55025   8 0.19454 0.3275 1.06, 2.85 -0.6
CC040/TauUncJ f 2.79 0.91662   8 0.32408 0.3285 1.71, 4.39 0.13
CC040/TauUncJ m 2.29 0.64447   8 0.22785 0.2814 1.17, 3.17 -0.1
CC041/TauUncJ f 0.99 0.61391   8 0.21705 0.6201 0.05, 1.65 -1.12
CC041/TauUncJ m 0.91125 0.42753   8 0.15116 0.4692 0.54, 1.92 -1.23
CC051/TauUncJ f 2.0513 0.8697   8 0.30749 0.424 0.19, 2.87 -0.39
CC051/TauUncJ m 1.486 0.65335   10 0.20661 0.4397 0.87, 3.1 -0.76
CC068/TauUncJ f 1.116 0.45577   5 0.20383 0.4084 0.59, 1.7 -1.04
CC068/TauUncJ m 1.1975 0.50627   8 0.17899 0.4228 0.67, 2.04 -1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 2.0862 0.2792 2.6366 1.5359
CC002/UncJ m 2.24 0.2985 2.8283 1.6517
CC003/UncJ f 3.496 0.3532 4.1921 2.7999
CC003/UncJ m 4.0025 0.3949 4.7808 3.2242
CC004/TauUncJ f 6.0275 0.2792 6.5778 5.4772
CC004/TauUncJ m 4.5438 0.2792 5.0941 3.9934
CC006/TauUncJ f 3.105 0.3949 3.8833 2.3267
CC006/TauUncJ m 2.0975 0.2792 2.6478 1.5472
CC009/UncJ f 2.9688 0.2792 3.5191 2.4184
CC009/UncJ m 3.8775 0.2792 4.4278 3.3272
CC013/GeniUncJ f 2.8263 0.2792 3.3766 2.2759
CC013/GeniUncJ m 3.19 0.3949 3.9683 2.4117
CC017/UncJ f 2.8717 0.3224 3.5071 2.2362
CC017/UncJ m 2.32 0.3532 3.0161 1.6239
CC018/UncJ f 3.0463 0.2792 3.5966 2.4959
CC018/UncJ m 3.2363 0.2792 3.7866 2.6859
CC019/TauUncJ f 2.53 0.2792 3.0803 1.9797
CC019/TauUncJ m 1.7013 0.2792 2.2516 1.1509
CC024/GeniUncJ f 0.8957 0.2985 1.484 0.3074
CC024/GeniUncJ m 0.985 0.2792 1.5353 0.4347
CC025/GeniUncJ f 2.45 0.3224 3.0855 1.8145
CC025/GeniUncJ m 1.019 0.2497 1.5112 0.5268
CC026/GeniUncJ f 5.4075 0.2792 5.9578 4.8572
CC026/GeniUncJ m 4.335 0.2792 4.8853 3.7847
CC032/GeniUncJ f 1.9588 0.2792 2.5091 1.4084
CC032/GeniUncJ m 1.68 0.2792 2.2303 1.1297
CC040/TauUncJ f 2.79 0.2792 3.3403 2.2397
CC040/TauUncJ m 2.29 0.2792 2.8403 1.7397
CC041/TauUncJ f 0.99 0.2792 1.5403 0.4397
CC041/TauUncJ m 0.9113 0.2792 1.4616 0.3609
CC051/TauUncJ f 2.0513 0.2792 2.6016 1.5009
CC051/TauUncJ m 1.486 0.2497 1.9782 0.9938
CC068/TauUncJ f 1.116 0.3532 1.8121 0.4199
CC068/TauUncJ m 1.1975 0.2792 1.7478 0.6472


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 2.1631 0.2044 2.5659 1.7603
CC003/UncJ both 3.7493 0.2649 4.2713 3.2272
CC004/TauUncJ both 5.2856 0.1974 5.6748 4.8965
CC006/TauUncJ both 2.6013 0.2418 3.0778 2.1247
CC009/UncJ both 3.4231 0.1974 3.8123 3.034
CC013/GeniUncJ both 3.0081 0.2418 3.4847 2.5315
CC017/UncJ both 2.5958 0.2391 3.0671 2.1246
CC018/UncJ both 3.1413 0.1974 3.5304 2.7521
CC019/TauUncJ both 2.1156 0.1974 2.5048 1.7265
CC024/GeniUncJ both 0.9404 0.2044 1.3432 0.5376
CC025/GeniUncJ both 1.7345 0.2039 2.1364 1.3326
CC026/GeniUncJ both 4.8713 0.1974 5.2604 4.4821
CC032/GeniUncJ both 1.8194 0.1974 2.2085 1.4302
CC040/TauUncJ both 2.54 0.1974 2.9291 2.1509
CC041/TauUncJ both 0.9506 0.1974 1.3398 0.5615
CC051/TauUncJ both 1.7686 0.1873 2.1378 1.3995
CC068/TauUncJ both 1.1568 0.2251 1.6004 0.7131




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA