Project measure / variable:   JaxCC1   periphery_speed_OF

ID, description, units MPD:89019   periphery_speed_OF   average speed in periphery of arena, 20 min test   [cm/s]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - average speed in periphery of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means1.899   cm/s 1.7723   cm/s
Median of the strain means1.9087   cm/s 1.6757   cm/s
SD of the strain means± 1.0773 ± 0.91422
Coefficient of variation (CV)0.5673 0.5158
Min–max range of strain means0.235   –   4.6925   cm/s 0.6375   –   3.4963   cm/s
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.6276 6.6276 19.3772 < 0.0001
strain 16 213.3524 13.3345 38.9864 < 0.0001
sex:strain 16 14.3298 0.8956 2.6185 0.0009
Residuals 215 73.5364 0.342


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 1.6075 0.31249   8 0.11048 0.1944 1.16, 2.07 -0.27
CC002/UncJ m 1.6757 0.52475   7 0.19834 0.3131 1.13, 2.78 -0.11
CC003/UncJ f 2.8 0.31193   5 0.1395 0.1114 2.4, 3.27 0.84
CC003/UncJ m 3.0525 0.8461   4 0.42305 0.2772 2.07, 4.11 1.4
CC004/TauUncJ f 4.6925 0.67186   8 0.23754 0.1432 3.92, 5.96 2.59
CC004/TauUncJ m 3.4963 0.59823   8 0.21151 0.1711 2.37, 4.45 1.89
CC006/TauUncJ f 2.0975 0.53363   4 0.26681 0.2544 1.45, 2.55 0.18
CC006/TauUncJ m 1.365 0.69175   8 0.24457 0.5068 0.49, 2.27 -0.45
CC009/UncJ f 2.0375 0.90342   8 0.31941 0.4434 1.21, 3.72 0.13
CC009/UncJ m 2.7512 0.82272   8 0.29088 0.299 1.98, 4.35 1.07
CC010/GeniUncJ f 0.235 0.14154   4 0.07077 0.6023 0.03, 0.35 -1.54
CC013/GeniUncJ f 1.96 0.49281   8 0.17423 0.2514 1.06, 2.66 0.06
CC013/GeniUncJ m 2.2975 0.78856   4 0.39428 0.3432 1.41, 3.19 0.57
CC017/UncJ f 2.03 0.78946   6 0.32229 0.3889 1.03, 3.12 0.12
CC017/UncJ m 1.748 0.45942   5 0.20546 0.2628 1.16, 2.28 -0.03
CC018/UncJ f 2.2888 0.53408   8 0.18883 0.2333 1.31, 3.08 0.36
CC018/UncJ m 2.4287 0.66611   8 0.2355 0.2743 1.51, 3.53 0.72
CC019/TauUncJ f 1.8575 0.62764   8 0.22191 0.3379 0.49, 2.61 -0.04
CC019/TauUncJ m 1.2 0.39792   8 0.14069 0.3316 0.71, 1.86 -0.63
CC024/GeniUncJ f 0.64 0.17916   7 0.06772 0.2799 0.49, 0.93 -1.17
CC024/GeniUncJ m 0.665 0.38538   8 0.13625 0.5795 0.33, 1.4 -1.21
CC025/GeniUncJ f 1.7317 1.0948   6 0.44696 0.6322 0.32, 2.87 -0.16
CC025/GeniUncJ m 0.814 0.7708   10 0.24375 0.9469 0.04, 2.41 -1.05
CC026/GeniUncJ f 3.7338 0.45907   8 0.1623 0.123 3.27, 4.73 1.7
CC026/GeniUncJ m 3.05 0.42688   8 0.15093 0.14 2.29, 3.59 1.4
CC032/GeniUncJ f 1.425 0.44938   8 0.15888 0.3154 0.78, 2.21 -0.44
CC032/GeniUncJ m 1.2337 0.47683   8 0.16859 0.3865 0.78, 2.31 -0.59
CC040/TauUncJ f 2.0938 0.75313   8 0.26627 0.3597 1.17, 3.38 0.18
CC040/TauUncJ m 1.7362 0.45588   8 0.16118 0.2626 0.93, 2.31 -0.04
CC041/TauUncJ f 0.70875 0.47112   8 0.16657 0.6647 0.01, 1.26 -1.1
CC041/TauUncJ m 0.6375 0.30747   8 0.10871 0.4823 0.34, 1.34 -1.24
CC051/TauUncJ f 1.405 0.57983   8 0.205 0.4127 0.12, 1.94 -0.46
CC051/TauUncJ m 1.056 0.46862   10 0.14819 0.4438 0.58, 2.22 -0.78
CC068/TauUncJ f 0.838 0.20945   5 0.09367 0.2499 0.51, 1.04 -0.98
CC068/TauUncJ m 0.92125 0.44315   8 0.15668 0.481 0.52, 1.76 -0.93


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 1.6075 0.2068 2.0151 1.1999
CC002/UncJ m 1.6757 0.221 2.1114 1.24
CC003/UncJ f 2.8 0.2615 3.3155 2.2845
CC003/UncJ m 3.0525 0.2924 3.6289 2.4761
CC004/TauUncJ f 4.6925 0.2068 5.1001 4.2849
CC004/TauUncJ m 3.4963 0.2068 3.9038 3.0887
CC006/TauUncJ f 2.0975 0.2924 2.6739 1.5211
CC006/TauUncJ m 1.365 0.2068 1.7726 0.9574
CC009/UncJ f 2.0375 0.2068 2.4451 1.6299
CC009/UncJ m 2.7512 0.2068 3.1588 2.3437
CC013/GeniUncJ f 1.96 0.2068 2.3676 1.5524
CC013/GeniUncJ m 2.2975 0.2924 2.8739 1.7211
CC017/UncJ f 2.03 0.2388 2.5006 1.5594
CC017/UncJ m 1.748 0.2615 2.2635 1.2325
CC018/UncJ f 2.2887 0.2068 2.6963 1.8812
CC018/UncJ m 2.4288 0.2068 2.8363 2.0212
CC019/TauUncJ f 1.8575 0.2068 2.2651 1.4499
CC019/TauUncJ m 1.2 0.2068 1.6076 0.7924
CC024/GeniUncJ f 0.64 0.221 1.0757 0.2043
CC024/GeniUncJ m 0.665 0.2068 1.0726 0.2574
CC025/GeniUncJ f 1.7317 0.2388 2.2023 1.2611
CC025/GeniUncJ m 0.814 0.1849 1.1785 0.4495
CC026/GeniUncJ f 3.7338 0.2068 4.1413 3.3262
CC026/GeniUncJ m 3.05 0.2068 3.4576 2.6424
CC032/GeniUncJ f 1.425 0.2068 1.8326 1.0174
CC032/GeniUncJ m 1.2337 0.2068 1.6413 0.8262
CC040/TauUncJ f 2.0938 0.2068 2.5013 1.6862
CC040/TauUncJ m 1.7362 0.2068 2.1438 1.3287
CC041/TauUncJ f 0.7087 0.2068 1.1163 0.3012
CC041/TauUncJ m 0.6375 0.2068 1.0451 0.2299
CC051/TauUncJ f 1.405 0.2068 1.8126 0.9974
CC051/TauUncJ m 1.056 0.1849 1.4205 0.6915
CC068/TauUncJ f 0.838 0.2615 1.3535 0.3225
CC068/TauUncJ m 0.9213 0.2068 1.3288 0.5137


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 1.6416 0.1513 1.9399 1.3433
CC003/UncJ both 2.9262 0.1962 3.3129 2.5396
CC004/TauUncJ both 4.0944 0.1462 4.3826 3.8062
CC006/TauUncJ both 1.7313 0.1791 2.0842 1.3783
CC009/UncJ both 2.3944 0.1462 2.6826 2.1062
CC013/GeniUncJ both 2.1288 0.1791 2.4817 1.7758
CC017/UncJ both 1.889 0.1771 2.238 1.54
CC018/UncJ both 2.3588 0.1462 2.6469 2.0706
CC019/TauUncJ both 1.5287 0.1462 1.8169 1.2406
CC024/GeniUncJ both 0.6525 0.1513 0.9508 0.3542
CC025/GeniUncJ both 1.2728 0.151 1.5705 0.9752
CC026/GeniUncJ both 3.3919 0.1462 3.6801 3.1037
CC032/GeniUncJ both 1.3294 0.1462 1.6176 1.0412
CC040/TauUncJ both 1.915 0.1462 2.2032 1.6268
CC041/TauUncJ both 0.6731 0.1462 0.9613 0.3849
CC051/TauUncJ both 1.2305 0.1387 1.5039 0.9571
CC068/TauUncJ both 0.8796 0.1667 1.2082 0.551




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA