Phenotype measure:   JaxCC1   center_speed_OF

ID, description, units MPD:89018   center_speed_OF   average speed in center of arena, 20 min test   [cm/s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - average speed in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means4.5807   cm/s 4.2243   cm/s
Median of the strain means4.1331   cm/s 4.116   cm/s
SD of the strain means± 2.5348 ± 2.0357
Coefficient of variation (CV)0.5534 0.4819
Min–max range of strain means0.894   –   9.3513   cm/s 1.192   –   9.1613   cm/s
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 35.2515 35.2515 8.5167 0.0039
strain 16 1085.2151 67.8259 16.3866 < 0.0001
sex:strain 16 168.6105 10.5382 2.546 0.0013
Residuals 215 889.9097 4.1391


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 2.1925 1.6673   8 0.58949 0.7605 0.78, 6.13 -0.94
CC002/UncJ m 3.6686 1.5672   7 0.59236 0.4272 1.82, 6.27 -0.27
CC003/UncJ f 4.562 1.263   5 0.56482 0.2768 2.88, 6.06 -0.01
CC003/UncJ m 5.4225 1.3842   4 0.69211 0.2553 3.71, 6.9 0.59
CC004/TauUncJ f 9.0575 2.4655   8 0.87168 0.2722 5.59, 11.83 1.77
CC004/TauUncJ m 5.7287 0.93711   8 0.33132 0.1636 4.86, 7.71 0.74
CC006/TauUncJ f 4.7475 1.5267   4 0.76333 0.3216 3.42, 6.37 0.07
CC006/TauUncJ m 5.11 2.6147   8 0.92445 0.5117 1.06, 9.64 0.44
CC009/UncJ f 9.3513 4.3665   8 1.5438 0.4669 5.41, 17.67 1.88
CC009/UncJ m 9.1613 2.2641   8 0.80047 0.2471 4.66, 11.96 2.43
CC010/GeniUncJ f 0.894 0.93265   5 0.41709 1.0432 0.01, 2.2 -1.45
CC013/GeniUncJ f 4.8662 1.3763   8 0.48658 0.2828 3.3, 6.96 0.11
CC013/GeniUncJ m 5.29 1.4623   4 0.73114 0.2764 4.1, 7.42 0.52
CC017/UncJ f 5.6433 2.4794   6 1.0122 0.4394 3.15, 10.14 0.42
CC017/UncJ m 4.116 0.73728   5 0.32972 0.1791 3.35, 4.93 -0.05
CC018/UncJ f 3.8012 1.6156   8 0.57121 0.425 1.38, 6.43 -0.31
CC018/UncJ m 4.2962 1.4978   8 0.52954 0.3486 1.64, 6.36 0.04
CC019/TauUncJ f 4.465 1.5631   8 0.55263 0.3501 2.28, 6.35 -0.05
CC019/TauUncJ m 4.7325 2.0959   8 0.74102 0.4429 3.46, 9.74 0.25
CC024/GeniUncJ f 2.7286 1.3545   7 0.51195 0.4964 1.16, 4.88 -0.73
CC024/GeniUncJ m 2.435 1.9038   8 0.67308 0.7818 0.38, 5.53 -0.88
CC025/GeniUncJ f 6.7267 6.7274   6 2.7464 1.0001 0.37, 19.0 0.85
CC025/GeniUncJ m 1.192 1.2684   10 0.40111 1.0641 0.13, 3.77 -1.49
CC026/GeniUncJ f 8.8513 2.3736   8 0.83921 0.2682 5.73, 11.72 1.68
CC026/GeniUncJ m 7.33 0.95982   8 0.33935 0.1309 6.27, 9.08 1.53
CC032/GeniUncJ f 3.7088 1.5198   8 0.53732 0.4098 1.63, 6.37 -0.34
CC032/GeniUncJ m 2.875 0.85254   8 0.30142 0.2965 1.57, 4.02 -0.66
CC040/TauUncJ f 3.7625 0.91724   8 0.32429 0.2438 2.65, 5.35 -0.32
CC040/TauUncJ m 2.995 1.1687   8 0.41318 0.3902 1.14, 4.6 -0.6
CC041/TauUncJ f 1.6525 1.0688   8 0.37788 0.6468 0.05, 2.89 -1.16
CC041/TauUncJ m 1.8813 0.81382   8 0.28773 0.4326 0.72, 3.39 -1.15
CC051/TauUncJ f 3.7388 2.0283   8 0.71711 0.5425 0.32, 6.12 -0.33
CC051/TauUncJ m 3.4 1.1633   10 0.36786 0.3421 1.29, 5.86 -0.4
CC068/TauUncJ f 1.702 1.23   5 0.55007 0.7227 0.17, 3.47 -1.14
CC068/TauUncJ m 2.1787 1.5527   8 0.54896 0.7127 0.8, 4.76 -1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 2.1925 0.7193 3.6103 0.7747
CC002/UncJ m 3.6686 0.769 5.1842 2.1529
CC003/UncJ f 4.562 0.9098 6.3554 2.7686
CC003/UncJ m 5.4225 1.0172 7.4275 3.4175
CC004/TauUncJ f 9.0575 0.7193 10.4753 7.6397
CC004/TauUncJ m 5.7288 0.7193 7.1465 4.311
CC006/TauUncJ f 4.7475 1.0172 6.7525 2.7425
CC006/TauUncJ m 5.11 0.7193 6.5278 3.6922
CC009/UncJ f 9.3513 0.7193 10.769 7.9335
CC009/UncJ m 9.1613 0.7193 10.579 7.7435
CC013/GeniUncJ f 4.8663 0.7193 6.284 3.4485
CC013/GeniUncJ m 5.29 1.0172 7.295 3.285
CC017/UncJ f 5.6433 0.8306 7.2804 4.0062
CC017/UncJ m 4.116 0.9098 5.9094 2.3226
CC018/UncJ f 3.8013 0.7193 5.219 2.3835
CC018/UncJ m 4.2963 0.7193 5.714 2.8785
CC019/TauUncJ f 4.465 0.7193 5.8828 3.0472
CC019/TauUncJ m 4.7325 0.7193 6.1503 3.3147
CC024/GeniUncJ f 2.7286 0.769 4.2442 1.2129
CC024/GeniUncJ m 2.435 0.7193 3.8528 1.0172
CC025/GeniUncJ f 6.7267 0.8306 8.3638 5.0896
CC025/GeniUncJ m 1.192 0.6434 2.4601 -0.0761
CC026/GeniUncJ f 8.8513 0.7193 10.269 7.4335
CC026/GeniUncJ m 7.33 0.7193 8.7478 5.9122
CC032/GeniUncJ f 3.7088 0.7193 5.1265 2.291
CC032/GeniUncJ m 2.875 0.7193 4.2928 1.4572
CC040/TauUncJ f 3.7625 0.7193 5.1803 2.3447
CC040/TauUncJ m 2.995 0.7193 4.4128 1.5772
CC041/TauUncJ f 1.6525 0.7193 3.0703 0.2347
CC041/TauUncJ m 1.8813 0.7193 3.299 0.4635
CC051/TauUncJ f 3.7388 0.7193 5.1565 2.321
CC051/TauUncJ m 3.4 0.6434 4.6681 2.1319
CC068/TauUncJ f 1.702 0.9098 3.4954 -0.0914
CC068/TauUncJ m 2.1788 0.7193 3.5965 0.761


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 2.9305 0.5265 3.9682 1.8928
CC003/UncJ both 4.9923 0.6824 6.3373 3.6472
CC004/TauUncJ both 7.3931 0.5086 8.3956 6.3906
CC006/TauUncJ both 4.9288 0.6229 6.1566 3.7009
CC009/UncJ both 9.2563 0.5086 10.2588 8.2537
CC013/GeniUncJ both 5.0781 0.6229 6.306 3.8503
CC017/UncJ both 4.8797 0.616 6.0938 3.6656
CC018/UncJ both 4.0488 0.5086 5.0513 3.0462
CC019/TauUncJ both 4.5988 0.5086 5.6013 3.5962
CC024/GeniUncJ both 2.5818 0.5265 3.6195 1.5441
CC025/GeniUncJ both 3.9593 0.5253 4.9947 2.9239
CC026/GeniUncJ both 8.0906 0.5086 9.0931 7.0881
CC032/GeniUncJ both 3.2919 0.5086 4.2944 2.2894
CC040/TauUncJ both 3.3788 0.5086 4.3813 2.3762
CC041/TauUncJ both 1.7669 0.5086 2.7694 0.7644
CC051/TauUncJ both 3.5694 0.4825 4.5204 2.6183
CC068/TauUncJ both 1.9404 0.5799 3.0834 0.7973




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA