Project measure / variable:   JaxCC1   periphery_dist_OF

ID, description, units MPD:89017   periphery_dist_OF   distance traveled in periphery of arena, 20 min test   [cm]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled in periphery of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means1980.0   cm 1842.0   cm
Median of the strain means1928.0   cm 1817.0   cm
SD of the strain means± 1124.0 ± 905.5
Coefficient of variation (CV)0.5679 0.4916
Min–max range of strain means277.9   –   4919.0   cm 723.7   –   3358.0   cm
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7548243.9426 7548243.9426 21.556 < 0.0001
strain 16 219068999.4112 13691812.4632 39.1005 < 0.0001
sex:strain 16 19239748.3512 1202484.2719 3.434 < 0.0001
Residuals 215 75286482.6864 350169.6869


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 1702.0 289.3   8 102.3 0.1699 1296.0, 2099.0 -0.25
CC002/UncJ m 1817.0 488.9   7 184.8 0.269 1250.0, 2811.0 -0.03
CC003/UncJ f 2873.0 488.9   5 218.6 0.1701 2496.0, 3685.0 0.79
CC003/UncJ m 3119.0 664.0   4 332.0 0.2129 2349.0, 3912.0 1.41
CC004/TauUncJ f 4919.0 833.7   8 294.8 0.1695 3699.0, 6442.0 2.61
CC004/TauUncJ m 3358.0 478.1   8 169.0 0.1424 2494.0, 4171.0 1.67
CC006/TauUncJ f 1936.0 516.2   4 258.1 0.2667 1346.0, 2408.0 -0.04
CC006/TauUncJ m 1431.0 653.5   8 231.0 0.4567 571.8, 2290.0 -0.45
CC009/UncJ f 2361.0 1026.0   8 362.8 0.4347 1417.0, 4248.0 0.34
CC009/UncJ m 3083.0 939.1   8 332.0 0.3046 2310.0, 5034.0 1.37
CC010/GeniUncJ f 277.9 165.0   4 82.49 0.5938 39.7, 414.4 -1.51
CC013/GeniUncJ f 1887.0 422.7   8 149.4 0.224 1130.0, 2388.0 -0.08
CC013/GeniUncJ m 2240.0 507.3   4 253.6 0.2265 1593.0, 2701.0 0.44
CC017/UncJ f 2185.0 782.9   6 319.6 0.3584 1213.0, 3288.0 0.18
CC017/UncJ m 1872.0 502.8   5 224.9 0.2686 1232.0, 2498.0 0.03
CC018/UncJ f 2253.0 601.5   8 212.7 0.2669 1239.0, 3019.0 0.24
CC018/UncJ m 2386.0 638.0   8 225.6 0.2673 1431.0, 3490.0 0.6
CC019/TauUncJ f 1975.0 618.7   8 218.8 0.3134 575.7, 2477.0 0.0
CC019/TauUncJ m 1353.0 423.4   8 149.7 0.3129 838.2, 2024.0 -0.54
CC024/GeniUncJ f 701.1 180.4   7 68.17 0.2572 525.7, 1041.0 -1.14
CC024/GeniUncJ m 723.7 391.9   8 138.6 0.5416 375.1, 1446.0 -1.24
CC025/GeniUncJ f 1921.0 1194.0   6 487.4 0.6215 373.4, 3170.0 -0.05
CC025/GeniUncJ m 785.2 699.1   10 221.1 0.8905 47.6, 1994.0 -1.17
CC026/GeniUncJ f 3933.0 523.6   8 185.1 0.1331 3519.0, 5080.0 1.74
CC026/GeniUncJ m 3120.0 392.6   8 138.8 0.1258 2393.0, 3686.0 1.41
CC032/GeniUncJ f 1546.0 491.3   8 173.7 0.3178 914.6, 2496.0 -0.39
CC032/GeniUncJ m 1308.0 433.8   8 153.4 0.3317 855.7, 2268.0 -0.59
CC040/TauUncJ f 2128.0 612.5   8 216.6 0.2878 1350.0, 3008.0 0.13
CC040/TauUncJ m 1879.0 521.0   8 184.2 0.2773 1016.0, 2567.0 0.04
CC041/TauUncJ f 779.9 518.6   8 183.4 0.665 14.9, 1374.0 -1.07
CC041/TauUncJ m 735.4 330.5   8 116.8 0.4494 398.8, 1475.0 -1.22
CC051/TauUncJ f 1499.0 596.0   8 210.7 0.3976 137.1, 2092.0 -0.43
CC051/TauUncJ m 1160.0 443.8   10 140.3 0.3826 691.4, 2300.0 -0.75
CC068/TauUncJ f 764.5 305.3   5 136.5 0.3993 441.1, 1208.0 -1.08
CC068/TauUncJ m 943.1 408.0   8 144.2 0.4326 515.6, 1558.0 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 1702.5 209.2157 2114.8765 1290.1235
CC002/UncJ m 1817.4286 223.661 2258.2776 1376.5795
CC003/UncJ f 2873.2 264.6393 3394.8196 2351.5804
CC003/UncJ m 3119.0 295.8757 3702.1885 2535.8115
CC004/TauUncJ f 4919.375 209.2157 5331.7515 4506.9985
CC004/TauUncJ m 3358.0 209.2157 3770.3765 2945.6235
CC006/TauUncJ f 1935.5 295.8757 2518.6885 1352.3115
CC006/TauUncJ m 1430.7125 209.2157 1843.089 1018.336
CC009/UncJ f 2360.75 209.2157 2773.1265 1948.3735
CC009/UncJ m 3082.75 209.2157 3495.1265 2670.3735
CC013/GeniUncJ f 1887.0 209.2157 2299.3765 1474.6235
CC013/GeniUncJ m 2239.5 295.8757 2822.6885 1656.3115
CC017/UncJ f 2184.6667 241.5815 2660.8381 1708.4953
CC017/UncJ m 1871.8 264.6393 2393.4196 1350.1804
CC018/UncJ f 2253.25 209.2157 2665.6265 1840.8735
CC018/UncJ m 2386.5 209.2157 2798.8765 1974.1235
CC019/TauUncJ f 1974.5875 209.2157 2386.964 1562.211
CC019/TauUncJ m 1353.125 209.2157 1765.5015 940.7485
CC024/GeniUncJ f 701.1286 223.661 1141.9776 260.2795
CC024/GeniUncJ m 723.6875 209.2157 1136.064 311.311
CC025/GeniUncJ f 1920.85 241.5815 2397.0214 1444.6786
CC025/GeniUncJ m 785.15 187.1282 1153.9908 416.3092
CC026/GeniUncJ f 3933.125 209.2157 4345.5015 3520.7485
CC026/GeniUncJ m 3119.75 209.2157 3532.1265 2707.3735
CC032/GeniUncJ f 1545.95 209.2157 1958.3265 1133.5735
CC032/GeniUncJ m 1307.8375 209.2157 1720.214 895.461
CC040/TauUncJ f 2128.125 209.2157 2540.5015 1715.7485
CC040/TauUncJ m 1878.875 209.2157 2291.2515 1466.4985
CC041/TauUncJ f 779.875 209.2157 1192.2515 367.4985
CC041/TauUncJ m 735.35 209.2157 1147.7265 322.9735
CC051/TauUncJ f 1499.2625 209.2157 1911.639 1086.886
CC051/TauUncJ m 1159.96 187.1282 1528.8008 791.1192
CC068/TauUncJ f 764.48 264.6393 1286.0996 242.8604
CC068/TauUncJ m 943.1375 209.2157 1355.514 530.761


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 1759.9643 153.1302 2061.793 1458.1356
CC003/UncJ both 2996.1 198.4794 3387.3147 2604.8853
CC004/TauUncJ both 4138.6875 147.9378 4430.2817 3847.0933
CC006/TauUncJ both 1683.1062 181.1861 2040.2348 1325.9777
CC009/UncJ both 2721.75 147.9378 3013.3442 2430.1558
CC013/GeniUncJ both 2063.25 181.1861 2420.3785 1706.1215
CC017/UncJ both 2028.2333 179.1616 2381.3715 1675.0952
CC018/UncJ both 2319.875 147.9378 2611.4692 2028.2808
CC019/TauUncJ both 1663.8562 147.9378 1955.4505 1372.262
CC024/GeniUncJ both 712.408 153.1302 1014.2367 410.5793
CC025/GeniUncJ both 1353.0 152.7895 1654.1572 1051.8428
CC026/GeniUncJ both 3526.4375 147.9378 3818.0317 3234.8433
CC032/GeniUncJ both 1426.8937 147.9378 1718.488 1135.2995
CC040/TauUncJ both 2003.5 147.9378 2295.0942 1711.9058
CC041/TauUncJ both 757.6125 147.9378 1049.2067 466.0183
CC051/TauUncJ both 1329.6112 140.3462 1606.2418 1052.9807
CC068/TauUncJ both 853.8087 168.6751 1186.2773 521.3402




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA