Phenotype measure:   JaxCC1   center_dist_OF

ID, description, units MPD:89016   center_dist_OF   distance traveled in center of arena, 20 min test   [cm]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means603.5   cm 582.9   cm
Median of the strain means519.5   cm 368.5   cm
SD of the strain means± 405.1 ± 400.7
Coefficient of variation (CV)0.6712 0.6874
Min–max range of strain means33.52   –   1323.0   cm 79.31   –   1329.0   cm
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 414916.4132 414916.4132 3.5445 0.0611
strain 16 33435358.9317 2089709.9332 17.8518 < 0.0001
sex:strain 16 2640598.1697 165037.3856 1.4099 0.1388
Residuals 215 25167649.3855 117058.8344


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 269.6 183.3   8 64.81 0.6799 76.0, 573.0 -0.82
CC002/UncJ m 368.5 170.5   7 64.42 0.4625 117.3, 614.2 -0.54
CC003/UncJ f 703.0 297.1   5 132.9 0.4226 441.1, 1188.0 0.25
CC003/UncJ m 957.5 602.2   4 301.1 0.6289 245.9, 1719.0 0.93
CC004/TauUncJ f 1323.0 304.2   8 107.6 0.2299 904.2, 1846.0 1.78
CC004/TauUncJ m 1329.0 296.5   8 104.8 0.2231 714.9, 1767.0 1.86
CC006/TauUncJ f 1311.0 400.8   4 200.4 0.3058 944.9, 1841.0 1.75
CC006/TauUncJ m 656.2 617.6   8 218.4 0.9411 23.3, 1850.0 0.18
CC009/UncJ f 388.0 294.2   8 104.0 0.7581 127.2, 1013.0 -0.53
CC009/UncJ m 673.7 322.0   8 113.9 0.478 201.4, 1279.0 0.23
CC010/GeniUncJ f 33.52 41.347   5 18.491 1.2335 10.0, 106.8 -1.41
CC013/GeniUncJ f 1063.0 246.4   8 87.12 0.2318 693.3, 1390.0 1.13
CC013/GeniUncJ m 1149.0 1055.0   4 527.4 0.9181 271.4, 2632.0 1.41
CC017/UncJ f 637.6 539.2   6 220.1 0.8456 50.5, 1466.0 0.08
CC017/UncJ m 522.1 128.4   5 57.41 0.2459 372.5, 667.3 -0.15
CC018/UncJ f 765.6 260.7   8 92.17 0.3405 351.8, 1178.0 0.4
CC018/UncJ m 917.4 440.0   8 155.5 0.4795 413.4, 1614.0 0.83
CC019/TauUncJ f 516.3 272.0   8 96.17 0.5269 58.5, 871.6 -0.22
CC019/TauUncJ m 328.1 315.4   8 111.5 0.9613 110.0, 1070.0 -0.64
CC024/GeniUncJ f 186.9 114.3   7 43.212 0.6118 66.5, 345.4 -1.03
CC024/GeniUncJ m 234.5 269.5   8 95.28 1.1494 38.4, 839.2 -0.87
CC025/GeniUncJ f 444.5 356.1   6 145.4 0.8013 24.9, 859.6 -0.39
CC025/GeniUncJ m 198.4 261.9   10 82.81 1.32 16.2, 787.0 -0.96
CC026/GeniUncJ f 1276.0 491.1   8 173.6 0.3849 513.6, 1949.0 1.66
CC026/GeniUncJ m 1272.0 349.2   8 123.5 0.2746 781.2, 1645.0 1.72
CC032/GeniUncJ f 325.6 152.2   8 53.8 0.4674 133.1, 577.4 -0.69
CC032/GeniUncJ m 352.4 174.2   8 61.58 0.4943 167.0, 587.4 -0.58
CC040/TauUncJ f 639.0 461.8   8 163.3 0.7227 159.4, 1650.0 0.09
CC040/TauUncJ m 327.1 141.4   8 50.0 0.4324 124.2, 614.8 -0.64
CC041/TauUncJ f 139.7 80.36   8 28.411 0.5753 3.2, 224.8 -1.15
CC041/TauUncJ m 79.31 106.9   8 37.783 1.3474 8.4, 327.1 -1.26
CC051/TauUncJ f 522.6 427.6   8 151.2 0.8182 7.3, 1198.0 -0.2
CC051/TauUncJ m 304.8 305.4   10 96.59 1.0021 38.7, 955.9 -0.69
CC068/TauUncJ f 318.7 305.7   5 136.7 0.9591 65.7, 766.4 -0.7
CC068/TauUncJ m 239.5 183.9   8 65.03 0.7679 46.6, 554.4 -0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 269.6125 120.9643 508.0402 31.1848
CC002/UncJ m 368.5286 129.3162 623.4185 113.6386
CC003/UncJ f 703.04 153.009 1004.6299 401.4501
CC003/UncJ m 957.5 171.0693 1294.6877 620.3123
CC004/TauUncJ f 1323.3125 120.9643 1561.7402 1084.8848
CC004/TauUncJ m 1329.2375 120.9643 1567.6652 1090.8098
CC006/TauUncJ f 1310.725 171.0693 1647.9127 973.5373
CC006/TauUncJ m 656.25 120.9643 894.6777 417.8223
CC009/UncJ f 388.05 120.9643 626.4777 149.6223
CC009/UncJ m 673.725 120.9643 912.1527 435.2973
CC013/GeniUncJ f 1062.8375 120.9643 1301.2652 824.4098
CC013/GeniUncJ m 1149.025 171.0693 1486.2127 811.8373
CC017/UncJ f 637.6333 139.6775 912.946 362.3207
CC017/UncJ m 522.14 153.009 823.7299 220.5501
CC018/UncJ f 765.6125 120.9643 1004.0402 527.1848
CC018/UncJ m 917.4375 120.9643 1155.8652 679.0098
CC019/TauUncJ f 516.3 120.9643 754.7277 277.8723
CC019/TauUncJ m 328.0875 120.9643 566.5152 89.6598
CC024/GeniUncJ f 186.8857 129.3162 441.7757 -68.0042
CC024/GeniUncJ m 234.4625 120.9643 472.8902 -3.9652
CC025/GeniUncJ f 444.4667 139.6775 719.7793 169.154
CC025/GeniUncJ m 198.38 108.1937 411.6362 -14.8762
CC026/GeniUncJ f 1276.0 120.9643 1514.4277 1037.5723
CC026/GeniUncJ m 1271.825 120.9643 1510.2527 1033.3973
CC032/GeniUncJ f 325.6125 120.9643 564.0402 87.1848
CC032/GeniUncJ m 352.375 120.9643 590.8027 113.9473
CC040/TauUncJ f 639.0 120.9643 877.4277 400.5723
CC040/TauUncJ m 327.125 120.9643 565.5527 88.6973
CC041/TauUncJ f 139.6875 120.9643 378.1152 -98.7402
CC041/TauUncJ m 79.3125 120.9643 317.7402 -159.1152
CC051/TauUncJ f 522.6125 120.9643 761.0402 284.1848
CC051/TauUncJ m 304.79 108.1937 518.0462 91.5338
CC068/TauUncJ f 318.74 153.009 620.3299 17.1501
CC068/TauUncJ m 239.525 120.9643 477.9527 1.0973


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 319.0705 88.5368 493.5818 144.5593
CC003/UncJ both 830.27 114.7568 1056.4624 604.0776
CC004/TauUncJ both 1326.275 85.5347 1494.8689 1157.6811
CC006/TauUncJ both 983.4875 104.7581 1189.972 777.003
CC009/UncJ both 530.8875 85.5347 699.4814 362.2936
CC013/GeniUncJ both 1105.9312 104.7581 1312.4157 899.4468
CC017/UncJ both 579.8867 103.5876 784.064 375.7094
CC018/UncJ both 841.525 85.5347 1010.1189 672.9311
CC019/TauUncJ both 422.1938 85.5347 590.7876 253.5999
CC024/GeniUncJ both 210.6741 88.5368 385.1853 36.1629
CC025/GeniUncJ both 321.4233 88.3398 495.5463 147.3003
CC026/GeniUncJ both 1273.9125 85.5347 1442.5064 1105.3186
CC032/GeniUncJ both 338.9938 85.5347 507.5876 170.3999
CC040/TauUncJ both 483.0625 85.5347 651.6564 314.4686
CC041/TauUncJ both 109.5 85.5347 278.0939 -59.0939
CC051/TauUncJ both 413.7013 81.1453 573.6434 253.7591
CC068/TauUncJ both 279.1325 97.5245 471.3591 86.9059




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA