Phenotype measure:   JaxCC1   distance_slope_OF

ID, description, units MPD:89015   distance_slope_OF   distance traveled slope, 20 min test  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled slope, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means-12.644   None -24.594   None
Median of the strain means0.4625   None -22.446   None
SD of the strain means± 32.118 ± 35.774
Coefficient of variation (CV)-2.5402 -1.4546
Min–max range of strain means-107.6   –   30.675   None -112.3   –   13.951   None
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6608.3427 6608.3427 2.6063 0.1079
strain 16 242701.1725 15168.8233 5.9826 < 0.0001
sex:strain 16 46815.37 2925.9606 1.154 0.3077
Residuals 214 542597.5073 2535.5024


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 9.1375 29.22   8 10.331 3.1978 -25.77, 60.37 0.68
CC002/UncJ m -43.08 57.5   7 21.732 -1.3347 -124.0, 23.07 -0.52
CC003/UncJ f 3.52 78.14   5 34.946 22.1994 -87.97, 94.47 0.5
CC003/UncJ m -29.592 57.94   4 28.971 -1.958 -95.97, 43.4 -0.14
CC004/TauUncJ f -107.6 70.26   8 24.839 -0.653 -274.7, -52.83 -2.96
CC004/TauUncJ m -92.51 34.83   8 12.314 -0.3765 -134.4, -30.3 -1.9
CC006/TauUncJ f -46.142 39.218   4 19.609 -0.8499 -99.63, -6.1 -1.04
CC006/TauUncJ m -32.984 31.272   8 11.056 -0.9481 -74.47, 15.43 -0.23
CC009/UncJ f -41.851 31.911   8 11.282 -0.7625 -94.87, 16.9 -0.91
CC009/UncJ m -21.539 85.83   8 30.347 -3.9851 -161.5, 132.5 0.09
CC010/GeniUncJ f 8.806 16.793   5 7.51 1.907 -2.93, 37.0 0.67
CC013/GeniUncJ f -21.53 32.304   8 11.421 -1.5004 -87.57, 27.27 -0.28
CC013/GeniUncJ m -39.71 51.34   4 25.668 -1.2928 -90.6, 15.8 -0.42
CC017/UncJ f -2.595 47.055   6 19.21 -18.1328 -56.37, 68.4 0.31
CC017/UncJ m 5.974 44.356   5 19.837 7.4249 -64.83, 53.33 0.85
CC018/UncJ f 8.68 35.013   8 12.379 4.0338 -47.1, 55.0 0.66
CC018/UncJ m -22.446 46.331   8 16.381 -2.0641 -86.07, 53.6 0.06
CC019/TauUncJ f 3.5362 38.082   8 13.464 10.7691 -72.67, 64.73 0.5
CC019/TauUncJ m 10.433 88.35   8 31.237 8.469 -65.13, 216.8 0.98
CC024/GeniUncJ f -33.01 17.325   7 6.5483 -0.5248 -52.1, -4.23 -0.63
CC024/GeniUncJ m -25.929 39.064   8 13.811 -1.5066 -119.5, 1.33 -0.04
CC025/GeniUncJ f 11.35 63.31   6 25.846 5.5779 -66.4, 112.3 0.75
CC025/GeniUncJ m 11.421 31.822   10 10.063 2.7863 -40.23, 47.47 1.01
CC026/GeniUncJ f -30.184 81.38   8 28.771 -2.6961 -144.6, 67.87 -0.55
CC026/GeniUncJ m -112.3 59.63   8 21.083 -0.531 -181.6, -32.0 -2.45
CC032/GeniUncJ f 30.675 34.258   8 12.112 1.1168 6.17, 111.4 1.35
CC032/GeniUncJ m 3.1488 29.775   8 10.527 9.4561 -42.33, 61.3 0.78
CC040/TauUncJ f 9.1575 72.79   8 25.735 7.9485 -88.9, 114.7 0.68
CC040/TauUncJ m -1.02 51.85   8 18.332 -50.8331 -78.43, 84.23 0.66
CC041/TauUncJ f -7.4713 38.366   8 13.564 -5.1352 -47.03, 56.37 0.16
CC041/TauUncJ m 13.951 34.646   7 13.095 2.4834 -30.63, 65.4 1.08
CC051/TauUncJ f -30.658 49.738   8 17.585 -1.6224 -134.0, 15.97 -0.56
CC051/TauUncJ m -45.4 40.093   10 12.678 -0.8831 -144.7, 3.27 -0.58
CC068/TauUncJ f 8.588 24.465   5 10.941 2.8488 -25.07, 32.67 0.66
CC068/TauUncJ m 3.48 40.766   8 14.413 11.7144 -81.53, 44.67 0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 9.1375 17.8027 44.2287 -25.9537
CC002/UncJ m -43.08 19.0319 -5.5659 -80.5941
CC003/UncJ f 3.52 22.5189 47.9072 -40.8672
CC003/UncJ m -29.5925 25.1769 20.0339 -79.2189
CC004/TauUncJ f -107.5825 17.8027 -72.4913 -142.6737
CC004/TauUncJ m -92.5125 17.8027 -57.4213 -127.6037
CC006/TauUncJ f -46.1425 25.1769 3.4839 -95.7689
CC006/TauUncJ m -32.9838 17.8027 2.1074 -68.0749
CC009/UncJ f -41.8513 17.8027 -6.7601 -76.9424
CC009/UncJ m -21.5388 17.8027 13.5524 -56.6299
CC013/GeniUncJ f -21.53 17.8027 13.5612 -56.6212
CC013/GeniUncJ m -39.71 25.1769 9.9164 -89.3364
CC017/UncJ f -2.595 20.5568 37.9248 -43.1148
CC017/UncJ m 5.974 22.5189 50.3612 -38.4132
CC018/UncJ f 8.68 17.8027 43.7712 -26.4112
CC018/UncJ m -22.4462 17.8027 12.6449 -57.5374
CC019/TauUncJ f 3.5362 17.8027 38.6274 -31.5549
CC019/TauUncJ m 10.4325 17.8027 45.5237 -24.6587
CC024/GeniUncJ f -33.01 19.0319 4.5041 -70.5241
CC024/GeniUncJ m -25.9288 17.8027 9.1624 -61.0199
CC025/GeniUncJ f 11.35 20.5568 51.8698 -29.1698
CC025/GeniUncJ m 11.421 15.9233 42.8075 -19.9655
CC026/GeniUncJ f -30.1837 17.8027 4.9074 -65.2749
CC026/GeniUncJ m -112.3125 17.8027 -77.2213 -147.4037
CC032/GeniUncJ f 30.675 17.8027 65.7662 -4.4162
CC032/GeniUncJ m 3.1487 17.8027 38.2399 -31.9424
CC040/TauUncJ f 9.1575 17.8027 44.2487 -25.9337
CC040/TauUncJ m -1.02 17.8027 34.0712 -36.1112
CC041/TauUncJ f -7.4713 17.8027 27.6199 -42.5624
CC041/TauUncJ m 13.9514 19.0319 51.4655 -23.5626
CC051/TauUncJ f -30.6575 17.8027 4.4337 -65.7487
CC051/TauUncJ m -45.4 15.9233 -14.0135 -76.7865
CC068/TauUncJ f 8.588 22.5189 52.9752 -35.7992
CC068/TauUncJ m 3.48 17.8027 38.5712 -31.6112


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both -16.9712 13.0303 8.7129 -42.6554
CC003/UncJ both -13.0363 16.8892 20.2542 -46.3267
CC004/TauUncJ both -100.0475 12.5884 -75.2343 -124.8607
CC006/TauUncJ both -39.5631 15.4176 -9.1733 -69.953
CC009/UncJ both -31.695 12.5884 -6.8818 -56.5082
CC013/GeniUncJ both -30.62 15.4176 -0.2301 -61.0099
CC017/UncJ both 1.6895 15.2454 31.7398 -28.3608
CC018/UncJ both -6.8831 12.5884 17.9301 -31.6963
CC019/TauUncJ both 6.9844 12.5884 31.7976 -17.8288
CC024/GeniUncJ both -29.4694 13.0303 -3.7853 -55.1535
CC025/GeniUncJ both 11.3855 13.0013 37.0125 -14.2415
CC026/GeniUncJ both -71.2481 12.5884 -46.4349 -96.0613
CC032/GeniUncJ both 16.9119 12.5884 41.7251 -7.9013
CC040/TauUncJ both 4.0687 12.5884 28.882 -20.7445
CC041/TauUncJ both 3.2401 13.0303 28.9242 -22.444
CC051/TauUncJ both -38.0288 11.9424 -14.4889 -61.5686
CC068/TauUncJ both 6.034 14.353 34.3254 -22.2574




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA