Phenotype measure:   JaxCC1   distance_habit__OF

ID, description, units MPD:89014   distance_habit__OF   distance traveled habituation ratio, 20 min test   [ratio]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled habituation ratio, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means-12.091   ratio -20.464   ratio
Median of the strain means3.0858   ratio -18.459   ratio
SD of the strain means± 34.411 ± 36.519
Coefficient of variation (CV)-2.846 -1.7846
Min–max range of strain means-115.8   –   34.489   ratio -112.0   –   21.556   ratio
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2878.6219 2878.6219 1.0636 0.3036
strain 16 262621.3558 16413.8347 6.0647 < 0.0001
sex:strain 16 53408.3709 3338.0232 1.2334 0.2443
Residuals 215 581886.6087 2706.4493


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 18.181 26.62   8 9.4117 1.4642 -18.56, 61.56 0.88
CC002/UncJ m -35.201 58.59   7 22.146 -1.6645 -114.3, 32.11 -0.4
CC003/UncJ f 1.69 78.36   5 35.043 46.3655 -96.89, 83.89 0.4
CC003/UncJ m -27.778 62.82   4 31.41 -2.2615 -96.33, 54.0 -0.2
CC004/TauUncJ f -115.8 69.29   8 24.496 -0.5984 -278.2, -60.33 -3.01
CC004/TauUncJ m -85.17 39.906   8 14.109 -0.4685 -134.6, -10.0 -1.77
CC006/TauUncJ f -45.47 31.333   4 15.666 -0.6891 -87.33, -11.67 -0.97
CC006/TauUncJ m -31.433 29.721   8 10.508 -0.9456 -75.78, 9.33 -0.3
CC009/UncJ f -35.375 38.006   8 13.437 -1.0744 -96.22, 30.89 -0.68
CC009/UncJ m -14.42 93.23   8 32.96 -6.465 -179.1, 130.3 0.17
CC010/GeniUncJ f 9.466 16.612   5 7.4289 1.7549 -2.56, 37.11 0.63
CC013/GeniUncJ f -26.154 29.824   8 10.544 -1.1403 -84.67, 16.89 -0.41
CC013/GeniUncJ m -36.748 44.789   4 22.394 -1.2188 -85.33, 4.78 -0.45
CC017/UncJ f 4.4817 45.694   6 18.655 10.1958 -46.0, 60.89 0.48
CC017/UncJ m 21.556 47.486   5 21.236 2.2029 -56.67, 67.56 1.15
CC018/UncJ f 13.223 38.928   8 13.763 2.944 -42.22, 67.22 0.74
CC018/UncJ m -18.459 46.562   8 16.462 -2.5225 -86.44, 60.67 0.05
CC019/TauUncJ f 5.4162 38.611   8 13.651 7.1288 -67.56, 70.56 0.51
CC019/TauUncJ m 13.916 102.5   8 36.245 7.3666 -70.44, 258.0 0.94
CC024/GeniUncJ f -35.476 14.766   7 5.581 -0.4162 -55.89, -16.67 -0.68
CC024/GeniUncJ m -22.864 37.995   8 13.433 -1.6618 -113.9, 1.0 -0.07
CC025/GeniUncJ f 8.4617 67.24   6 27.449 7.9459 -74.78, 117.1 0.6
CC025/GeniUncJ m 12.134 33.245   10 10.513 2.7398 -46.0, 59.67 0.89
CC026/GeniUncJ f -33.413 81.09   8 28.671 -2.427 -146.4, 70.44 -0.62
CC026/GeniUncJ m -112.0 59.6   8 21.07 -0.5323 -180.9, -28.78 -2.51
CC032/GeniUncJ f 34.489 35.541   8 12.566 1.0305 6.22, 115.7 1.35
CC032/GeniUncJ m 4.8462 32.97   8 11.657 6.8031 -41.78, 72.33 0.69
CC040/TauUncJ f 9.5 72.81   8 25.743 7.6646 -91.78, 93.0 0.63
CC040/TauUncJ m 5.6662 55.33   8 19.563 9.7654 -81.44, 89.22 0.72
CC041/TauUncJ f -10.821 37.652   8 13.312 -3.4794 -49.0, 55.67 0.04
CC041/TauUncJ m 14.485 35.461   8 12.537 2.4481 -32.67, 73.67 0.96
CC051/TauUncJ f -28.144 49.044   8 17.34 -1.7426 -131.6, 11.67 -0.47
CC051/TauUncJ m -45.635 40.43   10 12.785 -0.8859 -149.8, 1.78 -0.69
CC068/TauUncJ f 8.11 21.115   5 9.4429 2.6036 -25.0, 26.22 0.59
CC068/TauUncJ m 9.2212 40.882   8 14.454 4.4334 -71.56, 52.44 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 18.1813 18.3931 54.4351 -18.0726
CC002/UncJ m -35.2014 19.6631 3.5556 -73.9585
CC003/UncJ f 1.69 23.2656 47.5479 -44.1679
CC003/UncJ m -27.7775 26.0118 23.4932 -79.0482
CC004/TauUncJ f -115.7788 18.3931 -79.5249 -152.0326
CC004/TauUncJ m -85.1713 18.3931 -48.9174 -121.4251
CC006/TauUncJ f -45.47 26.0118 5.8007 -96.7407
CC006/TauUncJ m -31.4325 18.3931 4.8214 -67.6864
CC009/UncJ f -35.375 18.3931 0.8789 -71.6289
CC009/UncJ m -14.42 18.3931 21.8339 -50.6739
CC013/GeniUncJ f -26.1537 18.3931 10.1001 -62.4076
CC013/GeniUncJ m -36.7475 26.0118 14.5232 -88.0182
CC017/UncJ f 4.4817 21.2385 46.3441 -37.3807
CC017/UncJ m 21.556 23.2656 67.4139 -24.3019
CC018/UncJ f 13.2225 18.3931 49.4764 -23.0314
CC018/UncJ m -18.4587 18.3931 17.7951 -54.7126
CC019/TauUncJ f 5.4162 18.3931 41.6701 -30.8376
CC019/TauUncJ m 13.9163 18.3931 50.1701 -22.3376
CC024/GeniUncJ f -35.4757 19.6631 3.2813 -74.2328
CC024/GeniUncJ m -22.8637 18.3931 13.3901 -59.1176
CC025/GeniUncJ f 8.4617 21.2385 50.3241 -33.4007
CC025/GeniUncJ m 12.134 16.4513 44.5605 -20.2925
CC026/GeniUncJ f -33.4125 18.3931 2.8414 -69.6664
CC026/GeniUncJ m -111.9525 18.3931 -75.6986 -148.2064
CC032/GeniUncJ f 34.4888 18.3931 70.7426 -1.7651
CC032/GeniUncJ m 4.8463 18.3931 41.1001 -31.4076
CC040/TauUncJ f 9.5 18.3931 45.7539 -26.7539
CC040/TauUncJ m 5.6662 18.3931 41.9201 -30.5876
CC041/TauUncJ f -10.8212 18.3931 25.4326 -47.0751
CC041/TauUncJ m 14.485 18.3931 50.7389 -21.7689
CC051/TauUncJ f -28.1437 18.3931 8.1101 -64.3976
CC051/TauUncJ m -45.635 16.4513 -13.2085 -78.0615
CC068/TauUncJ f 8.11 23.2656 53.9679 -37.7479
CC068/TauUncJ m 9.2213 18.3931 45.4751 -27.0326


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both -8.5101 13.4624 18.025 -35.0452
CC003/UncJ both -13.0437 17.4492 21.3497 -47.4372
CC004/TauUncJ both -100.475 13.0059 -74.8396 -126.1104
CC006/TauUncJ both -38.4513 15.9289 -7.0545 -69.848
CC009/UncJ both -24.8975 13.0059 0.7379 -50.5329
CC013/GeniUncJ both -31.4506 15.9289 -0.0538 -62.8474
CC017/UncJ both 13.0188 15.7509 44.0648 -18.0271
CC018/UncJ both -2.6181 13.0059 23.0172 -28.2535
CC019/TauUncJ both 9.6663 13.0059 35.3016 -15.9691
CC024/GeniUncJ both -29.1697 13.4624 -2.6346 -55.7049
CC025/GeniUncJ both 10.2978 13.4324 36.7739 -16.1783
CC026/GeniUncJ both -72.6825 13.0059 -47.0471 -98.3179
CC032/GeniUncJ both 19.6675 13.0059 45.3029 -5.9679
CC040/TauUncJ both 7.5831 13.0059 33.2185 -18.0522
CC041/TauUncJ both 1.8319 13.0059 27.4672 -23.8035
CC051/TauUncJ both -36.8894 12.3385 -12.5695 -61.2092
CC068/TauUncJ both 8.6656 14.829 37.8944 -20.5632




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA