Phenotype measure:   JaxCC1   distance_total_OF

ID, description, units MPD:89013   distance_total_OF   total distance traveled, 20 min test   [cm]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - total distance traveled, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means3128.0   cm 2902.0   cm
Median of the strain means3192.0   cm 2688.0   cm
SD of the strain means± 1726.0 ± 1468.0
Coefficient of variation (CV)0.5516 0.506
Min–max range of strain means364.6   –   7234.0   cm 1093.0   –   5454.0   cm
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 18801909.3709 18801909.3709 20.9297 < 0.0001
strain 16 545343259.969 34083953.7481 37.9412 < 0.0001
sex:strain 16 39042981.6277 2440186.3517 2.7163 0.0006
Residuals 215 193142300.2452 898336.2802


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 2502.0 491.1   8 173.6 0.1963 1782.0, 3119.0 -0.36
CC002/UncJ m 2688.0 725.9   7 274.4 0.27 1822.0, 4106.0 -0.15
CC003/UncJ f 4195.0 449.1   5 200.8 0.1071 3821.0, 4936.0 0.62
CC003/UncJ m 4804.0 1349.0   4 674.6 0.2809 3162.0, 6404.0 1.3
CC004/TauUncJ f 7234.0 1022.0   8 361.3 0.1412 5964.0, 9134.0 2.38
CC004/TauUncJ m 5454.0 825.1   8 291.7 0.1513 3834.0, 6698.0 1.74
CC006/TauUncJ f 3726.0 1017.0   4 508.3 0.2729 2678.0, 4681.0 0.35
CC006/TauUncJ m 2517.0 1371.0   8 484.9 0.5448 872.0, 4754.0 -0.26
CC009/UncJ f 3563.0 1524.0   8 538.9 0.4278 2041.0, 6508.0 0.25
CC009/UncJ m 4652.0 1266.0   8 447.5 0.2721 3283.0, 7045.0 1.19
CC010/GeniUncJ f 364.6 285.8   5 127.8 0.7838 17.0, 635.0 -1.6
CC013/GeniUncJ f 3391.0 680.6   8 240.6 0.2007 2127.0, 4081.0 0.15
CC013/GeniUncJ m 3828.0 1547.0   4 773.6 0.4042 2252.0, 5820.0 0.63
CC017/UncJ f 3447.0 1392.0   6 568.1 0.4037 1768.0, 5527.0 0.18
CC017/UncJ m 2783.0 580.9   5 259.8 0.2087 2107.0, 3519.0 -0.08
CC018/UncJ f 3656.0 917.4   8 324.4 0.2509 1934.0, 4829.0 0.31
CC018/UncJ m 3882.0 1101.0   8 389.2 0.2836 2202.0, 5482.0 0.67
CC019/TauUncJ f 3035.0 956.1   8 338.0 0.315 872.0, 3948.0 -0.05
CC019/TauUncJ m 2042.0 762.5   8 269.6 0.3734 1232.0, 3591.0 -0.59
CC024/GeniUncJ f 1078.0 242.5   7 91.66 0.2249 857.0, 1493.0 -1.19
CC024/GeniUncJ m 1181.0 739.0   8 261.3 0.6256 569.0, 2696.0 -1.17
CC025/GeniUncJ f 2939.0 1808.0   6 738.2 0.6152 571.0, 4696.0 -0.11
CC025/GeniUncJ m 1222.0 1113.0   10 352.0 0.9113 103.0, 3260.0 -1.14
CC026/GeniUncJ f 6488.0 733.3   8 259.3 0.113 5866.0, 8213.0 1.95
CC026/GeniUncJ m 5200.0 644.9   8 228.0 0.124 4197.0, 6089.0 1.57
CC032/GeniUncJ f 2350.0 687.0   8 242.9 0.2924 1411.0, 3541.0 -0.45
CC032/GeniUncJ m 2016.0 658.4   8 232.8 0.3266 1275.0, 3417.0 -0.6
CC040/TauUncJ f 3350.0 1101.0   8 389.4 0.3288 2048.0, 5273.0 0.13
CC040/TauUncJ m 2749.0 771.9   8 272.9 0.2808 1410.0, 3808.0 -0.1
CC041/TauUncJ f 1188.0 739.8   8 261.6 0.6228 55.0, 1985.0 -1.12
CC041/TauUncJ m 1093.0 513.1   8 181.4 0.4696 652.0, 2305.0 -1.23
CC051/TauUncJ f 2464.0 1041.0   8 368.1 0.4226 234.0, 3440.0 -0.38
CC051/TauUncJ m 1785.0 782.6   10 247.5 0.4384 1046.0, 3718.0 -0.76
CC068/TauUncJ f 1339.0 546.4   5 244.4 0.4081 706.0, 2039.0 -1.04
CC068/TauUncJ m 1437.0 607.7   8 214.8 0.423 798.0, 2448.0 -1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 2501.625 335.1 3162.127 1841.123
CC002/UncJ m 2688.0 358.237 3394.1063 1981.8937
CC003/UncJ f 4195.2 423.8717 5030.6763 3359.7237
CC003/UncJ m 4803.75 473.903 5737.8409 3869.6591
CC004/TauUncJ f 7234.5 335.1 7895.002 6573.998
CC004/TauUncJ m 5453.5 335.1 6114.002 4792.998
CC006/TauUncJ f 3725.75 473.903 4659.8409 2791.6591
CC006/TauUncJ m 2517.25 335.1 3177.752 1856.748
CC009/UncJ f 3563.25 335.1 4223.752 2902.748
CC009/UncJ m 4651.625 335.1 5312.127 3991.123
CC013/GeniUncJ f 3390.875 335.1 4051.377 2730.373
CC013/GeniUncJ m 3828.25 473.903 4762.3409 2894.1591
CC017/UncJ f 3447.1667 386.9402 4209.8487 2684.4847
CC017/UncJ m 2782.8 423.8717 3618.2763 1947.3237
CC018/UncJ f 3656.375 335.1 4316.877 2995.873
CC018/UncJ m 3881.625 335.1 4542.127 3221.123
CC019/TauUncJ f 3035.375 335.1 3695.877 2374.873
CC019/TauUncJ m 2041.875 335.1 2702.377 1381.373
CC024/GeniUncJ f 1078.2857 358.237 1784.392 372.1794
CC024/GeniUncJ m 1181.25 335.1 1841.752 520.748
CC025/GeniUncJ f 2938.8333 386.9402 3701.5153 2176.1513
CC025/GeniUncJ m 1221.6 299.7226 1812.3709 630.8291
CC026/GeniUncJ f 6488.125 335.1 7148.627 5827.623
CC026/GeniUncJ m 5200.5 335.1 5861.002 4539.998
CC032/GeniUncJ f 2349.625 335.1 3010.127 1689.123
CC032/GeniUncJ m 2015.75 335.1 2676.252 1355.248
CC040/TauUncJ f 3349.75 335.1 4010.252 2689.248
CC040/TauUncJ m 2748.875 335.1 3409.377 2088.373
CC041/TauUncJ f 1187.875 335.1 1848.377 527.373
CC041/TauUncJ m 1092.75 335.1 1753.252 432.248
CC051/TauUncJ f 2463.75 335.1 3124.252 1803.248
CC051/TauUncJ m 1785.3 299.7226 2376.0709 1194.5291
CC068/TauUncJ f 1338.8 423.8717 2174.2763 503.3237
CC068/TauUncJ m 1436.625 335.1 2097.127 776.123


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 2594.8125 245.2681 3078.2505 2111.3745
CC003/UncJ both 4499.475 317.9038 5126.0822 3872.8678
CC004/TauUncJ both 6344.0 236.9515 6811.0454 5876.9546
CC006/TauUncJ both 3121.5 290.2051 3693.5115 2549.4885
CC009/UncJ both 4107.4375 236.9515 4574.4829 3640.3921
CC013/GeniUncJ both 3609.5625 290.2051 4181.574 3037.551
CC017/UncJ both 3114.9833 286.9625 3680.6034 2549.3632
CC018/UncJ both 3769.0 236.9515 4236.0454 3301.9546
CC019/TauUncJ both 2538.625 236.9515 3005.6704 2071.5796
CC024/GeniUncJ both 1129.7679 245.2681 1613.2058 646.3299
CC025/GeniUncJ both 2080.2167 244.7225 2562.5791 1597.8542
CC026/GeniUncJ both 5844.3125 236.9515 6311.3579 5377.2671
CC032/GeniUncJ both 2182.6875 236.9515 2649.7329 1715.6421
CC040/TauUncJ both 3049.3125 236.9515 3516.3579 2582.2671
CC041/TauUncJ both 1140.3125 236.9515 1607.3579 673.2671
CC051/TauUncJ both 2124.525 224.7919 2567.6032 1681.4468
CC068/TauUncJ both 1387.7125 270.1663 1920.2262 855.1988




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA