Project measure / variable:   JaxCC1   distance_3

ID, description, units MPD:89011   distance_3   distance traveled   [cm]  3rd 5min  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled 3rd 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means792.7   cm 657.7   cm
Median of the strain means818.8   cm 614.8   cm
SD of the strain means± 404.8 ± 321.6
Coefficient of variation (CV)0.5107 0.489
Min–max range of strain means125.8   –   1665.0   cm 206.2   –   1138.0   cm
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2781240.4063 2781240.4063 35.7021 < 0.0001
strain 16 26935353.0299 1683459.5644 21.6102 < 0.0001
sex:strain 16 2819070.2584 176191.8911 2.2617 0.0046
Residuals 215 16748766.5464 77901.2398


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 688.1 180.9   8 63.96 0.2629 521.0, 1052.0 -0.26
CC002/UncJ m 621.9 314.4   7 118.8 0.5055 266.0, 1254.0 -0.11
CC003/UncJ f 1119.0 302.7   5 135.4 0.2705 847.0, 1534.0 0.81
CC003/UncJ m 1112.0 343.3   4 171.6 0.3088 743.0, 1569.0 1.41
CC004/TauUncJ f 1665.0 213.3   8 75.4 0.1281 1361.0, 1954.0 2.16
CC004/TauUncJ m 1136.0 254.3   8 89.92 0.224 851.0, 1617.0 1.49
CC006/TauUncJ f 822.0 326.7   4 163.4 0.3975 572.0, 1294.0 0.07
CC006/TauUncJ m 565.8 286.2   8 101.2 0.5058 225.0, 1062.0 -0.29
CC009/UncJ f 928.5 506.5   8 179.1 0.5455 369.0, 1912.0 0.34
CC009/UncJ m 1138.0 294.5   8 104.1 0.2589 710.0, 1649.0 1.49
CC010/GeniUncJ f 125.8 88.44   4 44.22 0.7033 6.0, 196.0 -1.65
CC013/GeniUncJ f 815.6 289.6   8 102.4 0.355 289.0, 1170.0 0.06
CC013/GeniUncJ m 874.8 593.0   4 296.5 0.6779 419.0, 1688.0 0.68
CC017/UncJ f 872.0 413.7   6 168.9 0.4745 353.0, 1360.0 0.2
CC017/UncJ m 614.8 196.8   5 88.01 0.3201 297.0, 798.0 -0.13
CC018/UncJ f 911.4 255.4   8 90.31 0.2803 404.0, 1190.0 0.29
CC018/UncJ m 939.9 210.1   8 74.28 0.2235 697.0, 1189.0 0.88
CC019/TauUncJ f 777.4 232.5   8 82.19 0.299 347.0, 1019.0 -0.04
CC019/TauUncJ m 410.2 169.7   8 59.99 0.4136 196.0, 677.0 -0.77
CC024/GeniUncJ f 218.4 167.3   7 63.25 0.7661 62.0, 547.0 -1.42
CC024/GeniUncJ m 206.2 137.5   8 48.621 0.6668 66.0, 501.0 -1.4
CC025/GeniUncJ f 843.5 568.1   6 231.9 0.6736 136.0, 1375.0 0.13
CC025/GeniUncJ m 386.3 375.5   10 118.8 0.9721 18.0, 1082.0 -0.84
CC026/GeniUncJ f 1599.0 271.4   8 95.94 0.1697 1175.0, 1925.0 1.99
CC026/GeniUncJ m 1030.0 239.4   8 84.64 0.2324 780.0, 1570.0 1.16
CC032/GeniUncJ f 681.2 231.0   8 81.66 0.3391 339.0, 1138.0 -0.28
CC032/GeniUncJ m 540.6 162.7   8 57.53 0.301 288.0, 803.0 -0.36
CC040/TauUncJ f 903.0 245.1   8 86.66 0.2715 668.0, 1388.0 0.27
CC040/TauUncJ m 664.4 235.8   8 83.36 0.3549 356.0, 965.0 0.02
CC041/TauUncJ f 344.0 256.2   8 90.57 0.7447 1.0, 747.0 -1.11
CC041/TauUncJ m 262.6 207.7   8 73.45 0.791 4.0, 574.0 -1.23
CC051/TauUncJ f 561.1 246.0   8 86.98 0.4384 108.0, 886.0 -0.57
CC051/TauUncJ m 339.6 151.4   10 47.885 0.4459 82.0, 636.0 -0.99
CC068/TauUncJ f 392.8 152.9   5 68.37 0.3892 205.0, 602.0 -0.99
CC068/TauUncJ m 338.1 163.7   8 57.88 0.4842 198.0, 719.0 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 688.125 98.6796 882.6282 493.6218
CC002/UncJ m 621.8571 105.4929 829.7899 413.9244
CC003/UncJ f 1119.0 124.8209 1365.0293 872.9707
CC003/UncJ m 1111.5 139.554 1386.5691 836.4309
CC004/TauUncJ f 1664.875 98.6796 1859.3782 1470.3718
CC004/TauUncJ m 1135.5 98.6796 1330.0032 940.9968
CC006/TauUncJ f 822.0 139.554 1097.0691 546.9309
CC006/TauUncJ m 565.75 98.6796 760.2532 371.2468
CC009/UncJ f 928.5 98.6796 1123.0032 733.9968
CC009/UncJ m 1137.5 98.6796 1332.0032 942.9968
CC013/GeniUncJ f 815.625 98.6796 1010.1282 621.1218
CC013/GeniUncJ m 874.75 139.554 1149.8191 599.6809
CC017/UncJ f 872.0 113.9453 1096.593 647.407
CC017/UncJ m 614.8 124.8209 860.8293 368.7707
CC018/UncJ f 911.375 98.6796 1105.8782 716.8718
CC018/UncJ m 939.875 98.6796 1134.3782 745.3718
CC019/TauUncJ f 777.375 98.6796 971.8782 582.8718
CC019/TauUncJ m 410.25 98.6796 604.7532 215.7468
CC024/GeniUncJ f 218.4286 105.4929 426.3613 10.4959
CC024/GeniUncJ m 206.25 98.6796 400.7532 11.7468
CC025/GeniUncJ f 843.5 113.9453 1068.093 618.907
CC025/GeniUncJ m 386.3 88.2617 560.269 212.331
CC026/GeniUncJ f 1599.25 98.6796 1793.7532 1404.7468
CC026/GeniUncJ m 1030.25 98.6796 1224.7532 835.7468
CC032/GeniUncJ f 681.25 98.6796 875.7532 486.7468
CC032/GeniUncJ m 540.625 98.6796 735.1282 346.1218
CC040/TauUncJ f 903.0 98.6796 1097.5032 708.4968
CC040/TauUncJ m 664.375 98.6796 858.8782 469.8718
CC041/TauUncJ f 344.0 98.6796 538.5032 149.4968
CC041/TauUncJ m 262.625 98.6796 457.1282 68.1218
CC051/TauUncJ f 561.125 98.6796 755.6282 366.6218
CC051/TauUncJ m 339.6 88.2617 513.569 165.631
CC068/TauUncJ f 392.8 124.8209 638.8293 146.7707
CC068/TauUncJ m 338.125 98.6796 532.6282 143.6218


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 654.9911 72.226 797.3529 512.6293
CC003/UncJ both 1115.25 93.6156 1299.772 930.728
CC004/TauUncJ both 1400.1875 69.777 1537.7221 1262.6529
CC006/TauUncJ both 693.875 85.459 862.3197 525.4303
CC009/UncJ both 1033.0 69.777 1170.5346 895.4654
CC013/GeniUncJ both 845.1875 85.459 1013.6322 676.7428
CC017/UncJ both 743.4 84.5041 909.9626 576.8374
CC018/UncJ both 925.625 69.777 1063.1596 788.0904
CC019/TauUncJ both 593.8125 69.777 731.3471 456.2779
CC024/GeniUncJ both 212.3393 72.226 354.7011 69.9775
CC025/GeniUncJ both 614.9 72.0654 756.9451 472.8549
CC026/GeniUncJ both 1314.75 69.777 1452.2846 1177.2154
CC032/GeniUncJ both 610.9375 69.777 748.4721 473.4029
CC040/TauUncJ both 783.6875 69.777 921.2221 646.1529
CC041/TauUncJ both 303.3125 69.777 440.8471 165.7779
CC051/TauUncJ both 450.3625 66.1963 580.8392 319.8858
CC068/TauUncJ both 365.4625 79.558 522.276 208.649




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA