Phenotype measure:   JaxCC1   rears_total_OF

ID, description, units MPD:89008   rears_total_OF   total number of rears, 20 min test   [n]
Data set, strains JaxCC1   CC   17 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - total number of rears, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains17 strains
Mean of the strain means82.18   n 82.36   n
Median of the strain means82.25   n 81.75   n
SD of the strain means± 30.791 ± 36.682
Coefficient of variation (CV)0.3747 0.4454
Min–max range of strain means15.375   –   141.8   n 16.875   –   154.8   n
Mean sample size per strain7.1   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 28.3318 28.3318 0.0303 0.8621
strain 16 256125.6107 16007.8507 17.0924 < 0.0001
sex:strain 16 26815.6704 1675.9794 1.7895 0.034
Residuals 214 200420.996 936.5467


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 66.88 25.374   8 8.9711 0.3794 31.0, 103.0 -0.5
CC002/UncJ m 93.29 28.365   7 10.721 0.3041 40.0, 131.0 0.3
CC003/UncJ f 82.0 24.759   5 11.072 0.3019 55.0, 111.0 -0.01
CC003/UncJ m 81.75 22.381   4 11.191 0.2738 52.0, 99.0 -0.02
CC004/TauUncJ f 141.8 14.83   8 5.2432 0.1046 115.0, 163.0 1.94
CC004/TauUncJ m 144.8 14.41   8 5.0946 0.0995 124.0, 166.0 1.7
CC006/TauUncJ f 113.0 20.928   4 10.464 0.1852 96.0, 143.0 1.0
CC006/TauUncJ m 95.38 42.798   8 15.131 0.4487 28.0, 161.0 0.36
CC009/UncJ f 55.12 32.887   8 11.627 0.5966 9.0, 106.0 -0.88
CC009/UncJ m 86.25 32.906   8 11.634 0.3815 60.0, 160.0 0.11
CC013/GeniUncJ f 104.4 31.482   8 11.131 0.3016 62.0, 163.0 0.72
CC013/GeniUncJ m 103.0 49.987   4 24.993 0.4853 63.0, 175.0 0.56
CC017/UncJ f 58.5 33.333   6 13.608 0.5698 21.0, 109.0 -0.77
CC017/UncJ m 53.8 21.742   5 9.7232 0.4041 23.0, 76.0 -0.78
CC018/UncJ f 126.6 34.538   8 12.211 0.2728 50.0, 158.0 1.44
CC018/UncJ m 154.8 24.645   8 8.7132 0.1593 120.0, 190.0 1.97
CC019/TauUncJ f 82.25 28.704   8 10.148 0.349 12.0, 100.0 0.0
CC019/TauUncJ m 63.25 24.4   8 8.6267 0.3858 19.0, 94.0 -0.52
CC024/GeniUncJ f 66.71 14.186   7 5.3617 0.2126 45.0, 92.0 -0.5
CC024/GeniUncJ m 78.12 46.345   8 16.385 0.5932 19.0, 171.0 -0.12
CC025/GeniUncJ f 83.0 54.68   6 22.323 0.6588 16.0, 134.0 0.03
CC025/GeniUncJ m 38.111 40.634   9 13.545 1.0662 1.0, 114.0 -1.21
CC026/GeniUncJ f 95.25 42.067   8 14.873 0.4416 23.0, 155.0 0.42
CC026/GeniUncJ m 126.1 23.198   8 8.2016 0.1839 96.0, 162.0 1.19
CC032/GeniUncJ f 64.0 17.477   8 6.1789 0.2731 48.0, 94.0 -0.59
CC032/GeniUncJ m 55.88 16.19   8 5.7241 0.2898 39.0, 76.0 -0.72
CC040/TauUncJ f 94.62 32.111   8 11.353 0.3394 42.0, 158.0 0.4
CC040/TauUncJ m 91.38 25.32   8 8.9521 0.2771 50.0, 122.0 0.25
CC041/TauUncJ f 15.375 7.7448   8 2.7382 0.5037 6.0, 27.0 -2.17
CC041/TauUncJ m 16.875 13.239   8 4.6806 0.7845 7.0, 48.0 -1.79
CC051/TauUncJ f 98.0 49.019   8 17.331 0.5002 9.0, 162.0 0.51
CC051/TauUncJ m 72.5 36.041   10 11.397 0.4971 42.0, 160.0 -0.27
CC068/TauUncJ f 49.6 20.744   5 9.2769 0.4182 18.0, 70.0 -1.06
CC068/TauUncJ m 44.75 18.219   8 6.4414 0.4071 22.0, 75.0 -1.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 66.875 10.8198 88.2021 45.5479
CC002/UncJ m 93.2857 11.5669 116.0853 70.4861
CC003/UncJ f 82.0 13.6861 108.9768 55.0232
CC003/UncJ m 81.75 15.3015 111.911 51.589
CC004/TauUncJ f 141.75 10.8198 163.0771 120.4229
CC004/TauUncJ m 144.75 10.8198 166.0771 123.4229
CC006/TauUncJ f 113.0 15.3015 143.161 82.839
CC006/TauUncJ m 95.375 10.8198 116.7021 74.0479
CC009/UncJ f 55.125 10.8198 76.4521 33.7979
CC009/UncJ m 86.25 10.8198 107.5771 64.9229
CC013/GeniUncJ f 104.375 10.8198 125.7021 83.0479
CC013/GeniUncJ m 103.0 15.3015 133.161 72.839
CC017/UncJ f 58.5 12.4936 83.1264 33.8736
CC017/UncJ m 53.8 13.6861 80.7768 26.8232
CC018/UncJ f 126.625 10.8198 147.9521 105.2979
CC018/UncJ m 154.75 10.8198 176.0771 133.4229
CC019/TauUncJ f 82.25 10.8198 103.5771 60.9229
CC019/TauUncJ m 63.25 10.8198 84.5771 41.9229
CC024/GeniUncJ f 66.7143 11.5669 89.5139 43.9147
CC024/GeniUncJ m 78.125 10.8198 99.4521 56.7979
CC025/GeniUncJ f 83.0 12.4936 107.6264 58.3736
CC025/GeniUncJ m 38.1111 10.201 58.2185 18.0038
CC026/GeniUncJ f 95.25 10.8198 116.5771 73.9229
CC026/GeniUncJ m 126.125 10.8198 147.4521 104.7979
CC032/GeniUncJ f 64.0 10.8198 85.3271 42.6729
CC032/GeniUncJ m 55.875 10.8198 77.2021 34.5479
CC040/TauUncJ f 94.625 10.8198 115.9521 73.2979
CC040/TauUncJ m 91.375 10.8198 112.7021 70.0479
CC041/TauUncJ f 15.375 10.8198 36.7021 -5.9521
CC041/TauUncJ m 16.875 10.8198 38.2021 -4.4521
CC051/TauUncJ f 98.0 10.8198 119.3271 76.6729
CC051/TauUncJ m 72.5 9.6775 91.5755 53.4245
CC068/TauUncJ f 49.6 13.6861 76.5768 22.6232
CC068/TauUncJ m 44.75 10.8198 66.0771 23.4229


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 80.0804 7.9193 95.6902 64.4706
CC003/UncJ both 81.875 10.2646 102.1076 61.6424
CC004/TauUncJ both 143.25 7.6508 158.3305 128.1695
CC006/TauUncJ both 104.1875 9.3702 122.6573 85.7177
CC009/UncJ both 70.6875 7.6508 85.768 55.607
CC013/GeniUncJ both 103.6875 9.3702 122.1573 85.2177
CC017/UncJ both 56.15 9.2655 74.4134 37.8866
CC018/UncJ both 140.6875 7.6508 155.768 125.607
CC019/TauUncJ both 72.75 7.6508 87.8305 57.6695
CC024/GeniUncJ both 72.4196 7.9193 88.0294 56.8098
CC025/GeniUncJ both 60.5556 8.0646 76.4518 44.6593
CC026/GeniUncJ both 110.6875 7.6508 125.768 95.607
CC032/GeniUncJ both 59.9375 7.6508 75.018 44.857
CC040/TauUncJ both 93.0 7.6508 108.0805 77.9195
CC041/TauUncJ both 16.125 7.6508 31.2055 1.0445
CC051/TauUncJ both 85.25 7.2582 99.5566 70.9434
CC068/TauUncJ both 47.175 8.7232 64.3694 29.9806




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA