Project measure / variable:   JaxCC1   rears_1

ID, description, units MPD:89004   rears_1   number of rears, 20 min test   [n]  1st 5min  
Data set, strains JaxCC1   CC   17 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - number of rears, 20 min test 1st 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains17 strains
Mean of the strain means17.17   n 17.132   n
Median of the strain means15.4   n 15.857   n
SD of the strain means± 10.188 ± 9.7095
Coefficient of variation (CV)0.5934 0.5668
Min–max range of strain means3.5   –   45.625   n 2.6667   –   37.75   n
Mean sample size per strain6.6   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16.5936 16.5936 0.1481 0.7008
strain 16 20576.3706 1286.0232 11.4791 < 0.0001
sex:strain 16 791.6764 49.4798 0.4417 0.9694
Residuals 191 21398.0083 112.0315


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 9.125 7.754   8 2.7415 0.8498 1.0, 21.0 -0.79
CC002/UncJ m 15.286 12.919   7 4.883 0.8452 2.0, 34.0 -0.19
CC003/UncJ f 15.4 15.502   5 6.9325 1.0066 3.0, 42.0 -0.17
CC003/UncJ m 11.5 7.7244   4 3.8622 0.6717 3.0, 19.0 -0.58
CC004/TauUncJ f 45.625 5.0125   8 1.7722 0.1099 35.0, 51.0 2.79
CC004/TauUncJ m 37.75 8.5815   8 3.034 0.2273 25.0, 50.0 2.12
CC006/TauUncJ f 29.25 4.113   4 2.0565 0.1406 24.0, 33.0 1.19
CC006/TauUncJ m 28.571 11.9   7 4.4979 0.4165 13.0, 47.0 1.18
CC009/UncJ f 11.143 7.5593   7 2.8571 0.6784 1.0, 25.0 -0.59
CC009/UncJ m 15.857 9.2813   7 3.508 0.5853 5.0, 32.0 -0.13
CC013/GeniUncJ f 24.25 8.8277   8 3.1211 0.364 12.0, 38.0 0.69
CC013/GeniUncJ m 23.5 11.846   4 5.9231 0.5041 12.0, 39.0 0.66
CC017/UncJ f 7.4 9.3968   5 4.2024 1.2698 1.0, 24.0 -0.96
CC017/UncJ m 5.25 4.1932   4 2.0966 0.7987 1.0, 11.0 -1.22
CC018/UncJ f 24.25 14.743   8 5.2125 0.608 4.0, 42.0 0.69
CC018/UncJ m 30.0 14.697   8 5.1962 0.4899 1.0, 48.0 1.33
CC019/TauUncJ f 16.143 9.7882   7 3.6996 0.6064 6.0, 33.0 -0.1
CC019/TauUncJ m 18.286 8.7885   7 3.3217 0.4806 4.0, 29.0 0.12
CC024/GeniUncJ f 17.857 4.2201   7 1.5951 0.2363 10.0, 22.0 0.07
CC024/GeniUncJ m 17.0 18.646   7 7.0475 1.0968 3.0, 57.0 -0.01
CC025/GeniUncJ f 12.2 15.547   5 6.9527 1.2743 1.0, 37.0 -0.49
CC025/GeniUncJ m 5.5 8.3467   4 4.1733 1.5176 1.0, 18.0 -1.2
CC026/GeniUncJ f 23.625 16.283   8 5.7568 0.6892 3.0, 51.0 0.63
CC026/GeniUncJ m 25.875 8.2365   8 2.912 0.3183 12.0, 40.0 0.9
CC032/GeniUncJ f 8.0 3.9581   7 1.496 0.4948 2.0, 13.0 -0.9
CC032/GeniUncJ m 8.25 3.196   8 1.1299 0.3874 2.0, 12.0 -0.91
CC040/TauUncJ f 15.375 16.561   8 5.8552 1.0771 1.0, 54.0 -0.18
CC040/TauUncJ m 15.25 9.468   8 3.3474 0.6209 5.0, 31.0 -0.19
CC041/TauUncJ f 3.5 2.429   6 0.99163 0.694 1.0, 6.0 -1.34
CC041/TauUncJ m 2.6667 0.8165   6 0.33333 0.3062 2.0, 4.0 -1.49
CC051/TauUncJ f 19.25 11.474   8 4.0565 0.596 3.0, 33.0 0.2
CC051/TauUncJ m 20.7 12.419   10 3.9273 0.6 5.0, 48.0 0.37
CC068/TauUncJ f 9.5 4.4347   4 2.2174 0.4668 6.0, 16.0 -0.75
CC068/TauUncJ m 10.0 5.6125   5 2.51 0.5612 4.0, 16.0 -0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 9.125 3.7422 16.5063 1.7437
CC002/UncJ m 15.2857 4.0006 23.1767 7.3948
CC003/UncJ f 15.4 4.7335 24.7367 6.0633
CC003/UncJ m 11.5 5.2922 21.9388 1.0612
CC004/TauUncJ f 45.625 3.7422 53.0063 38.2437
CC004/TauUncJ m 37.75 3.7422 45.1313 30.3687
CC006/TauUncJ f 29.25 5.2922 39.6888 18.8112
CC006/TauUncJ m 28.5714 4.0006 36.4624 20.6805
CC009/UncJ f 11.1429 4.0006 19.0338 3.2519
CC009/UncJ m 15.8571 4.0006 23.7481 7.9662
CC013/GeniUncJ f 24.25 3.7422 31.6313 16.8687
CC013/GeniUncJ m 23.5 5.2922 33.9388 13.0612
CC017/UncJ f 7.4 4.7335 16.7367 -1.9367
CC017/UncJ m 5.25 5.2922 15.6888 -5.1888
CC018/UncJ f 24.25 3.7422 31.6313 16.8687
CC018/UncJ m 30.0 3.7422 37.3813 22.6187
CC019/TauUncJ f 16.1429 4.0006 24.0338 8.2519
CC019/TauUncJ m 18.2857 4.0006 26.1767 10.3948
CC024/GeniUncJ f 17.8571 4.0006 25.7481 9.9662
CC024/GeniUncJ m 17.0 4.0006 24.891 9.109
CC025/GeniUncJ f 12.2 4.7335 21.5367 2.8633
CC025/GeniUncJ m 5.5 5.2922 15.9388 -4.9388
CC026/GeniUncJ f 23.625 3.7422 31.0063 16.2437
CC026/GeniUncJ m 25.875 3.7422 33.2563 18.4937
CC032/GeniUncJ f 8.0 4.0006 15.891 0.109
CC032/GeniUncJ m 8.25 3.7422 15.6313 0.8687
CC040/TauUncJ f 15.375 3.7422 22.7563 7.9937
CC040/TauUncJ m 15.25 3.7422 22.6313 7.8687
CC041/TauUncJ f 3.5 4.3211 12.0232 -5.0232
CC041/TauUncJ m 2.6667 4.3211 11.1899 -5.8565
CC051/TauUncJ f 19.25 3.7422 26.6313 11.8687
CC051/TauUncJ m 20.7 3.3471 27.302 14.098
CC068/TauUncJ f 9.5 5.2922 19.9388 -0.9388
CC068/TauUncJ m 10.0 4.7335 19.3367 0.6633


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 12.2054 2.739 17.6079 6.8028
CC003/UncJ both 13.45 3.5501 20.4525 6.4475
CC004/TauUncJ both 41.6875 2.6461 46.9069 36.4681
CC006/TauUncJ both 28.9107 3.3171 35.4535 22.3679
CC009/UncJ both 13.5 2.8288 19.0797 7.9203
CC013/GeniUncJ both 23.875 3.2408 30.2674 17.4826
CC017/UncJ both 6.325 3.5501 13.3275 -0.6775
CC018/UncJ both 27.125 2.6461 32.3444 21.9056
CC019/TauUncJ both 17.2143 2.8288 22.794 11.6345
CC024/GeniUncJ both 17.4286 2.8288 23.0083 11.8488
CC025/GeniUncJ both 8.85 3.5501 15.8525 1.8475
CC026/GeniUncJ both 24.75 2.6461 29.9694 19.5306
CC032/GeniUncJ both 8.125 2.739 13.5276 2.7224
CC040/TauUncJ both 15.3125 2.6461 20.5319 10.0931
CC041/TauUncJ both 3.0833 3.0555 9.1102 -2.9435
CC051/TauUncJ both 19.975 2.5103 24.9265 15.0235
CC068/TauUncJ both 9.75 3.5501 16.7525 2.7475




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA