Phenotype measure:   JaxCC1   time_vertical_OF

ID, description, units MPD:89003   time_vertical_OF   whole arena time spent vertical, 20 min test   [s]
Data set, strains JaxCC1   CC   17 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - whole arena time spent vertical, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested17 strains17 strains
Mean of the strain means78.57   s 79.05   s
Median of the strain means71.36   s 81.33   s
SD of the strain means± 41.003 ± 41.731
Coefficient of variation (CV)0.5219 0.5279
Min–max range of strain means12.325   –   189.1   s 18.538   –   166.9   s
Mean sample size per strain7.1   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.3276 3.3276 0.0028 0.9579
strain 16 371492.0672 23218.2542 19.5318 < 0.0001
sex:strain 16 49308.9574 3081.8098 2.5925 0.001
Residuals 214 254391.011 1188.743


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 62.51 30.279   8 10.705 0.4844 25.5, 111.7 -0.39
CC002/UncJ m 98.09 56.71   7 21.433 0.5781 32.6, 216.4 0.46
CC003/UncJ f 81.64 24.393   5 10.909 0.2988 48.7, 109.3 0.07
CC003/UncJ m 81.33 30.331   4 15.166 0.373 36.7, 101.2 0.05
CC004/TauUncJ f 189.1 50.2   8 17.75 0.2655 144.9, 286.2 2.7
CC004/TauUncJ m 166.9 35.164   8 12.432 0.2107 106.7, 209.1 2.11
CC006/TauUncJ f 124.6 20.716   4 10.358 0.1662 105.6, 145.6 1.12
CC006/TauUncJ m 85.22 49.936   8 17.655 0.5859 15.1, 153.4 0.15
CC009/UncJ f 68.64 47.035   8 16.629 0.6853 6.7, 149.2 -0.24
CC009/UncJ m 112.7 34.68   8 12.261 0.3078 68.8, 174.1 0.81
CC013/GeniUncJ f 104.1 27.026   8 9.555 0.2596 61.4, 140.9 0.62
CC013/GeniUncJ m 94.77 40.762   4 20.381 0.4301 48.7, 142.3 0.38
CC017/UncJ f 41.517 23.218   6 9.4789 0.5593 11.3, 77.5 -0.9
CC017/UncJ m 46.72 22.778   5 10.187 0.4875 18.3, 69.7 -0.77
CC018/UncJ f 116.4 47.806   8 16.902 0.4105 49.8, 188.9 0.92
CC018/UncJ m 154.5 40.359   8 14.269 0.2612 114.0, 241.1 1.81
CC019/TauUncJ f 53.96 21.489   8 7.5975 0.3982 3.2, 74.8 -0.6
CC019/TauUncJ m 43.538 22.189   8 7.8451 0.5097 4.8, 72.0 -0.85
CC024/GeniUncJ f 55.17 21.169   7 8.0009 0.3837 39.1, 100.5 -0.57
CC024/GeniUncJ m 74.61 44.332   8 15.674 0.5942 19.2, 167.5 -0.11
CC025/GeniUncJ f 87.08 63.46   6 25.906 0.7287 13.8, 165.1 0.21
CC025/GeniUncJ m 30.044 31.913   9 10.638 1.0622 0.2, 92.8 -1.17
CC026/GeniUncJ f 71.36 37.079   8 13.109 0.5196 8.4, 121.0 -0.18
CC026/GeniUncJ m 107.2 30.216   8 10.683 0.2819 72.4, 158.0 0.67
CC032/GeniUncJ f 42.875 20.875   8 7.3805 0.4869 22.2, 82.4 -0.87
CC032/GeniUncJ m 47.675 13.968   8 4.9384 0.293 28.7, 68.4 -0.75
CC040/TauUncJ f 91.72 35.04   8 12.388 0.382 23.4, 151.0 0.32
CC040/TauUncJ m 89.9 33.402   8 11.809 0.3715 34.5, 138.6 0.26
CC041/TauUncJ f 12.325 7.2037   8 2.5469 0.5845 3.9, 23.8 -1.62
CC041/TauUncJ m 18.538 21.118   8 7.4664 1.1392 3.4, 69.3 -1.45
CC051/TauUncJ f 92.16 43.236   8 15.286 0.4691 3.1, 131.9 0.33
CC051/TauUncJ m 56.33 21.398   10 6.7668 0.3799 23.2, 94.1 -0.54
CC068/TauUncJ f 40.56 19.976   5 8.9333 0.4925 10.6, 66.5 -0.93
CC068/TauUncJ m 35.825 16.017   8 5.6628 0.4471 12.9, 60.0 -1.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 62.5125 12.1899 86.5401 38.4849
CC002/UncJ m 98.0857 13.0315 123.7723 72.3991
CC003/UncJ f 81.64 15.4191 112.0328 51.2472
CC003/UncJ m 81.325 17.2391 115.3051 47.3449
CC004/TauUncJ f 189.1125 12.1899 213.1401 165.0849
CC004/TauUncJ m 166.9 12.1899 190.9276 142.8724
CC006/TauUncJ f 124.625 17.2391 158.6051 90.6449
CC006/TauUncJ m 85.225 12.1899 109.2526 61.1974
CC009/UncJ f 68.6375 12.1899 92.6651 44.6099
CC009/UncJ m 112.6875 12.1899 136.7151 88.6599
CC013/GeniUncJ f 104.1125 12.1899 128.1401 80.0849
CC013/GeniUncJ m 94.775 17.2391 128.7551 60.7949
CC017/UncJ f 41.5167 14.0756 69.2613 13.772
CC017/UncJ m 46.72 15.4191 77.1128 16.3272
CC018/UncJ f 116.45 12.1899 140.4776 92.4224
CC018/UncJ m 154.5375 12.1899 178.5651 130.5099
CC019/TauUncJ f 53.9625 12.1899 77.9901 29.9349
CC019/TauUncJ m 43.5375 12.1899 67.5651 19.5099
CC024/GeniUncJ f 55.1714 13.0315 80.858 29.4849
CC024/GeniUncJ m 74.6125 12.1899 98.6401 50.5849
CC025/GeniUncJ f 87.0833 14.0756 114.828 59.3387
CC025/GeniUncJ m 30.0444 11.4927 52.6979 7.391
CC026/GeniUncJ f 71.3625 12.1899 95.3901 47.3349
CC026/GeniUncJ m 107.1875 12.1899 131.2151 83.1599
CC032/GeniUncJ f 42.875 12.1899 66.9026 18.8474
CC032/GeniUncJ m 47.675 12.1899 71.7026 23.6474
CC040/TauUncJ f 91.725 12.1899 115.7526 67.6974
CC040/TauUncJ m 89.9 12.1899 113.9276 65.8724
CC041/TauUncJ f 12.325 12.1899 36.3526 -11.7026
CC041/TauUncJ m 18.5375 12.1899 42.5651 -5.4901
CC051/TauUncJ f 92.1625 12.1899 116.1901 68.1349
CC051/TauUncJ m 56.33 10.9029 77.8209 34.8391
CC068/TauUncJ f 40.56 15.4191 70.9528 10.1672
CC068/TauUncJ m 35.825 12.1899 59.8526 11.7974


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 80.2991 8.9221 97.8855 62.7127
CC003/UncJ both 81.4825 11.5643 104.2771 58.6879
CC004/TauUncJ both 178.0062 8.6195 194.9963 161.0162
CC006/TauUncJ both 104.925 10.5567 125.7335 84.1165
CC009/UncJ both 90.6625 8.6195 107.6526 73.6724
CC013/GeniUncJ both 99.4438 10.5567 120.2522 78.6353
CC017/UncJ both 44.1183 10.4388 64.6943 23.5423
CC018/UncJ both 135.4938 8.6195 152.4838 118.5037
CC019/TauUncJ both 48.75 8.6195 65.7401 31.7599
CC024/GeniUncJ both 64.892 8.9221 82.4784 47.3056
CC025/GeniUncJ both 58.5639 9.0858 76.473 40.6548
CC026/GeniUncJ both 89.275 8.6195 106.2651 72.2849
CC032/GeniUncJ both 45.275 8.6195 62.2651 28.2849
CC040/TauUncJ both 90.8125 8.6195 107.8026 73.8224
CC041/TauUncJ both 15.4312 8.6195 32.4213 -1.5588
CC051/TauUncJ both 74.2463 8.1772 90.3644 58.1281
CC068/TauUncJ both 38.1925 9.8278 57.5642 18.8208




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA