Phenotype measure:   JaxCC1   whole_rest_OF

ID, description, units MPD:89002   whole_rest_OF   whole arena resting time, 20 min test   [s]
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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JaxCC1 - whole arena resting time, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means917.5   s 930.3   s
Median of the strain means940.8   s 966.2   s
SD of the strain means± 128.9 ± 113.6
Coefficient of variation (CV)0.1404 0.1221
Min–max range of strain means647.9   –   1148.0   s 734.0   –   1080.0   s
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 84207.5061 84207.5061 15.4974 0.0001
strain 16 3039830.6828 189989.4177 34.9653 < 0.0001
sex:strain 16 214551.9078 13409.4942 2.4679 0.0018
Residuals 215 1168237.2082 5433.6614


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 985.8 40.144   8 14.193 0.0407 938.4, 1041.0 0.53
CC002/UncJ m 975.2 52.88   7 19.987 0.0542 873.5, 1030.0 0.4
CC003/UncJ f 820.7 22.66   5 10.134 0.0276 797.3, 854.8 -0.75
CC003/UncJ m 753.4 100.5   4 50.27 0.1334 648.6, 879.1 -1.56
CC004/TauUncJ f 672.9 42.939   8 15.181 0.0638 611.1, 710.6 -1.9
CC004/TauUncJ m 745.4 61.74   8 21.828 0.0828 660.4, 867.8 -1.63
CC006/TauUncJ f 844.8 70.35   4 35.173 0.0833 783.8, 925.9 -0.56
CC006/TauUncJ m 966.2 109.8   8 38.811 0.1136 801.7, 1101.0 0.32
CC009/UncJ f 942.0 89.81   8 31.751 0.0953 779.1, 1020.0 0.19
CC009/UncJ m 850.5 77.46   8 27.387 0.0911 737.9, 960.7 -0.7
CC010/GeniUncJ f 1148.0 40.478   5 18.102 0.0353 1116.0, 1198.0 1.79
CC013/GeniUncJ f 937.4 44.984   8 15.904 0.048 888.1, 1022.0 0.15
CC013/GeniUncJ m 901.6 78.25   4 39.124 0.0868 813.1, 983.2 -0.25
CC017/UncJ f 952.9 66.39   6 27.105 0.0697 876.5, 1037.0 0.27
CC017/UncJ m 987.1 40.205   5 17.98 0.0407 936.1, 1042.0 0.5
CC018/UncJ f 803.8 64.04   8 22.64 0.0797 705.5, 920.6 -0.88
CC018/UncJ m 810.1 92.96   8 32.865 0.1147 687.2, 949.3 -1.06
CC019/TauUncJ f 869.5 97.54   8 34.485 0.1122 778.0, 1077.0 -0.37
CC019/TauUncJ m 990.4 79.05   8 27.949 0.0798 829.3, 1072.0 0.53
CC024/GeniUncJ f 1085.0 30.082   7 11.37 0.0277 1040.0, 1125.0 1.3
CC024/GeniUncJ m 1079.0 70.49   8 24.921 0.0653 950.5, 1152.0 1.31
CC025/GeniUncJ f 968.6 117.3   6 47.897 0.1211 823.4, 1129.0 0.4
CC025/GeniUncJ m 1080.0 94.98   10 30.035 0.0879 925.2, 1190.0 1.32
CC026/GeniUncJ f 647.9 48.842   8 17.268 0.0754 564.9, 713.9 -2.09
CC026/GeniUncJ m 734.0 56.88   8 20.108 0.0775 676.2, 805.6 -1.73
CC032/GeniUncJ f 939.5 75.59   8 26.725 0.0805 804.1, 1041.0 0.17
CC032/GeniUncJ m 965.6 46.773   8 16.537 0.0484 867.3, 1014.0 0.31
CC040/TauUncJ f 874.4 89.76   8 31.736 0.1027 705.4, 991.1 -0.33
CC040/TauUncJ m 919.2 58.24   8 20.592 0.0634 829.0, 1031.0 -0.1
CC041/TauUncJ f 1040.0 95.95   8 33.923 0.0923 944.4, 1193.0 0.95
CC041/TauUncJ m 1047.0 59.69   8 21.102 0.057 906.3, 1094.0 1.03
CC051/TauUncJ f 969.1 89.41   8 31.611 0.0923 890.6, 1166.0 0.4
CC051/TauUncJ m 1011.0 70.77   10 22.379 0.07 839.2, 1072.0 0.71
CC068/TauUncJ f 1013.0 69.13   5 30.914 0.0683 899.2, 1084.0 0.74
CC068/TauUncJ m 999.2 71.15   8 25.156 0.0712 858.7, 1068.0 0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 985.7625 26.0616 1037.1315 934.3935
CC002/UncJ m 975.2 27.861 1030.1157 920.2843
CC003/UncJ f 820.74 32.9656 885.7172 755.7628
CC003/UncJ m 753.45 36.8567 826.0967 680.8033
CC004/TauUncJ f 672.8625 26.0616 724.2315 621.4935
CC004/TauUncJ m 745.425 26.0616 796.794 694.056
CC006/TauUncJ f 844.775 36.8567 917.4217 772.1283
CC006/TauUncJ m 966.2 26.0616 1017.569 914.831
CC009/UncJ f 942.025 26.0616 993.394 890.656
CC009/UncJ m 850.55 26.0616 901.919 799.181
CC013/GeniUncJ f 937.4375 26.0616 988.8065 886.0685
CC013/GeniUncJ m 901.575 36.8567 974.2217 828.9283
CC017/UncJ f 952.8667 30.0934 1012.1825 893.5509
CC017/UncJ m 987.06 32.9656 1052.0372 922.0828
CC018/UncJ f 803.8125 26.0616 855.1815 752.4435
CC018/UncJ m 810.15 26.0616 861.519 758.781
CC019/TauUncJ f 869.5 26.0616 920.869 818.131
CC019/TauUncJ m 990.3875 26.0616 1041.7565 939.0185
CC024/GeniUncJ f 1085.4286 27.861 1140.3443 1030.5128
CC024/GeniUncJ m 1079.1875 26.0616 1130.5565 1027.8185
CC025/GeniUncJ f 968.5833 30.0934 1027.8991 909.2675
CC025/GeniUncJ m 1080.19 23.3102 1126.1358 1034.2442
CC026/GeniUncJ f 647.875 26.0616 699.244 596.506
CC026/GeniUncJ m 734.0125 26.0616 785.3815 682.6435
CC032/GeniUncJ f 939.55 26.0616 990.919 888.181
CC032/GeniUncJ m 965.6375 26.0616 1017.0065 914.2685
CC040/TauUncJ f 874.4125 26.0616 925.7815 823.0435
CC040/TauUncJ m 919.25 26.0616 970.619 867.881
CC041/TauUncJ f 1039.95 26.0616 1091.319 988.581
CC041/TauUncJ m 1047.0375 26.0616 1098.4065 995.6685
CC051/TauUncJ f 969.1 26.0616 1020.469 917.731
CC051/TauUncJ m 1011.37 23.3102 1057.3158 965.4242
CC068/TauUncJ f 1012.64 32.9656 1077.6172 947.6628
CC068/TauUncJ m 999.2375 26.0616 1050.6065 947.8685


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 980.4812 19.0751 1018.0795 942.883
CC003/UncJ both 787.095 24.7242 835.8279 738.3621
CC004/TauUncJ both 709.1437 18.4283 745.4671 672.8204
CC006/TauUncJ both 905.4875 22.57 949.9743 861.0007
CC009/UncJ both 896.2875 18.4283 932.6109 859.9641
CC013/GeniUncJ both 919.5062 22.57 963.9931 875.0194
CC017/UncJ both 969.9633 22.3178 1013.9531 925.9736
CC018/UncJ both 806.9812 18.4283 843.3046 770.6579
CC019/TauUncJ both 929.9437 18.4283 966.2671 893.6204
CC024/GeniUncJ both 1082.308 19.0751 1119.9063 1044.7098
CC025/GeniUncJ both 1024.3867 19.0327 1061.9013 986.8721
CC026/GeniUncJ both 690.9437 18.4283 727.2671 654.6204
CC032/GeniUncJ both 952.5937 18.4283 988.9171 916.2704
CC040/TauUncJ both 896.8312 18.4283 933.1546 860.5079
CC041/TauUncJ both 1043.4937 18.4283 1079.8171 1007.1704
CC051/TauUncJ both 990.235 17.4827 1024.6944 955.7756
CC068/TauUncJ both 1005.9387 21.0115 1047.3537 964.5238




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA