Project measure / variable:   JaxCC1   time_mobile_OF

ID, description, units MPD:89001   time_mobile_OF   whole arena time spent mobile, 20 min test   [s]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - whole arena time spent mobile, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means282.3   s 269.5   s
Median of the strain means259.1   s 233.7   s
SD of the strain means± 128.8 ± 113.6
Coefficient of variation (CV)0.4562 0.4216
Min–max range of strain means52.02   –   552.1   s 119.8   –   465.8   s
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 84064.1444 84064.1444 15.4752 0.0001
strain 16 3037537.9286 189846.1205 34.9484 < 0.0001
sex:strain 16 214202.2209 13387.6388 2.4645 0.0019
Residuals 215 1167921.106 5432.1912


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 214.1 40.065   8 14.165 0.1871 158.5, 261.5 -0.53
CC002/UncJ m 224.4 53.11   7 20.074 0.2367 168.9, 326.2 -0.4
CC003/UncJ f 378.8 22.749   5 10.174 0.0601 344.5, 402.1 0.75
CC003/UncJ m 446.3 100.9   4 50.43 0.226 320.2, 551.5 1.56
CC004/TauUncJ f 526.7 42.701   8 15.097 0.0811 489.3, 588.4 1.9
CC004/TauUncJ m 454.5 61.78   8 21.843 0.1359 332.0, 539.6 1.63
CC006/TauUncJ f 355.2 70.33   4 35.164 0.198 274.1, 416.2 0.57
CC006/TauUncJ m 233.7 109.8   8 38.803 0.4697 99.4, 398.3 -0.32
CC009/UncJ f 257.9 89.69   8 31.709 0.3478 180.4, 420.3 -0.19
CC009/UncJ m 349.2 77.31   8 27.332 0.2214 239.3, 462.1 0.7
CC010/GeniUncJ f 52.02 40.454   5 18.092 0.7777 1.9, 83.8 -1.79
CC013/GeniUncJ f 262.6 44.981   8 15.903 0.1713 178.1, 311.9 -0.15
CC013/GeniUncJ m 298.4 78.37   4 39.186 0.2626 216.6, 386.9 0.25
CC017/UncJ f 247.0 66.61   6 27.192 0.2697 162.6, 323.6 -0.27
CC017/UncJ m 212.9 40.283   5 18.015 0.1892 157.8, 263.9 -0.5
CC018/UncJ f 396.0 64.09   8 22.657 0.1618 279.3, 494.3 0.88
CC018/UncJ m 389.8 92.9   8 32.846 0.2384 250.7, 512.5 1.06
CC019/TauUncJ f 330.4 97.65   8 34.524 0.2955 122.7, 422.0 0.37
CC019/TauUncJ m 209.6 78.75   8 27.842 0.3758 128.4, 369.9 -0.53
CC024/GeniUncJ f 114.7 29.935   7 11.314 0.2611 74.9, 159.6 -1.3
CC024/GeniUncJ m 120.6 70.57   8 24.951 0.5851 47.8, 249.5 -1.31
CC025/GeniUncJ f 231.1 117.5   6 47.982 0.5086 70.7, 376.6 -0.4
CC025/GeniUncJ m 119.8 95.03   10 30.05 0.7932 9.5, 274.8 -1.32
CC026/GeniUncJ f 552.1 48.961   8 17.31 0.0887 486.1, 635.3 2.09
CC026/GeniUncJ m 465.8 56.99   8 20.148 0.1224 394.1, 523.8 1.73
CC032/GeniUncJ f 260.4 75.54   8 26.706 0.2901 159.4, 396.0 -0.17
CC032/GeniUncJ m 234.2 46.755   8 16.53 0.1997 186.0, 332.8 -0.31
CC040/TauUncJ f 325.2 89.39   8 31.604 0.2748 209.0, 493.6 0.33
CC040/TauUncJ m 280.6 58.19   8 20.572 0.2074 169.0, 371.0 0.1
CC041/TauUncJ f 160.0 95.97   8 33.931 0.5998 7.2, 255.7 -0.95
CC041/TauUncJ m 153.0 59.71   8 21.109 0.3903 106.0, 293.7 -1.03
CC051/TauUncJ f 230.6 89.25   8 31.556 0.387 34.2, 309.5 -0.4
CC051/TauUncJ m 188.5 70.8   10 22.39 0.3755 128.0, 360.9 -0.71
CC068/TauUncJ f 187.1 69.34   5 31.009 0.3705 115.6, 300.8 -0.74
CC068/TauUncJ m 200.7 71.02   8 25.108 0.3538 132.3, 341.1 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 214.1125 26.0581 265.4745 162.7505
CC002/UncJ m 224.3857 27.8573 279.294 169.4774
CC003/UncJ f 378.82 32.9612 443.7884 313.8516
CC003/UncJ m 446.275 36.8517 518.9119 373.6381
CC004/TauUncJ f 526.6625 26.0581 578.0245 475.3005
CC004/TauUncJ m 454.4875 26.0581 505.8495 403.1255
CC006/TauUncJ f 355.25 36.8517 427.8869 282.6131
CC006/TauUncJ m 233.65 26.0581 285.012 182.288
CC009/UncJ f 257.85 26.0581 309.212 206.488
CC009/UncJ m 349.225 26.0581 400.587 297.863
CC013/GeniUncJ f 262.6125 26.0581 313.9745 211.2505
CC013/GeniUncJ m 298.4 36.8517 371.0369 225.7631
CC017/UncJ f 246.9833 30.0893 306.2911 187.6756
CC017/UncJ m 212.86 32.9612 277.8284 147.8916
CC018/UncJ f 396.0 26.0581 447.362 344.638
CC018/UncJ m 389.775 26.0581 441.137 338.413
CC019/TauUncJ f 330.4375 26.0581 381.7995 279.0755
CC019/TauUncJ m 209.55 26.0581 260.912 158.188
CC024/GeniUncJ f 114.6571 27.8573 169.5655 59.7488
CC024/GeniUncJ m 120.625 26.0581 171.987 69.263
CC025/GeniUncJ f 231.1 30.0893 290.4078 171.7922
CC025/GeniUncJ m 119.8 23.3071 165.7396 73.8604
CC026/GeniUncJ f 552.0625 26.0581 603.4245 500.7005
CC026/GeniUncJ m 465.775 26.0581 517.137 414.413
CC032/GeniUncJ f 260.375 26.0581 311.737 209.013
CC032/GeniUncJ m 234.175 26.0581 285.537 182.813
CC040/TauUncJ f 325.25 26.0581 376.612 273.888
CC040/TauUncJ m 280.6 26.0581 331.962 229.238
CC041/TauUncJ f 160.0 26.0581 211.362 108.638
CC041/TauUncJ m 152.975 26.0581 204.337 101.613
CC051/TauUncJ f 230.625 26.0581 281.987 179.263
CC051/TauUncJ m 188.55 23.3071 234.4896 142.6104
CC068/TauUncJ f 187.14 32.9612 252.1084 122.1716
CC068/TauUncJ m 200.725 26.0581 252.087 149.363


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 219.2491 19.0726 256.8423 181.656
CC003/UncJ both 412.5475 24.7209 461.2738 363.8212
CC004/TauUncJ both 490.575 18.4259 526.8934 454.2566
CC006/TauUncJ both 294.45 22.567 338.9308 249.9692
CC009/UncJ both 303.5375 18.4259 339.8559 267.2191
CC013/GeniUncJ both 280.5062 22.567 324.9871 236.0254
CC017/UncJ both 229.9217 22.3148 273.9055 185.9379
CC018/UncJ both 392.8875 18.4259 429.2059 356.5691
CC019/TauUncJ both 269.9937 18.4259 306.3122 233.6753
CC024/GeniUncJ both 117.6411 19.0726 155.2342 80.0479
CC025/GeniUncJ both 175.45 19.0301 212.9595 137.9405
CC026/GeniUncJ both 508.9187 18.4259 545.2372 472.6003
CC032/GeniUncJ both 247.275 18.4259 283.5934 210.9566
CC040/TauUncJ both 302.925 18.4259 339.2434 266.6066
CC041/TauUncJ both 156.4875 18.4259 192.8059 120.1691
CC051/TauUncJ both 209.5875 17.4803 244.0422 175.1328
CC068/TauUncJ both 193.9325 21.0087 235.3419 152.5231




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA