Phenotype measure:   Neuner1   cfm_14mo_total

ID, description, units MPD:65985   cfm_14mo_total   percentage of time spent freezing at 14 mo of age, day 2 contextual fear memory, 10 min test   [%]  total
Data set, strains Neuner1   F1 AD-BXD   51 strains     sex: both     age: 55-57wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - percentage of time spent freezing at 14 mo of age, day 2 contextual fear memory, 10 min test total



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested48 strains35 strains
Mean of the strain means29.914   % 35.821   %
Median of the strain means29.446   % 32.988   %
SD of the strain means± 16.866 ± 16.663
Coefficient of variation (CV)0.5638 0.4652
Min–max range of strain means1.335   –   76.58   % 3.03   –   80.5   %
Mean sample size per strain4.5   mice 4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1639.0141 1639.0141 7.6139 0.0063
strain 25 61864.7266 2474.5891 11.4954 < 0.0001
sex:strain 25 9015.125 360.605 1.6752 0.0271
Residuals 222 47789.2506 215.2669


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg m 49.321 19.639   27 3.7796 0.3982 16.25, 86.06 0.81
(B6.5XFAD x B6)F1-Ntg f 53.61 14.156   9 4.7185 0.264 37.04, 72.01 1.4
(B6.5XFAD x B6)F1-Ntg m 55.03 12.797   11 3.8585 0.2325 35.98, 77.96 1.15
(B6.5XFAD x BXD100)F1-ADtg f 15.005 3.2173   2   2.275 0.2144 12.73, 17.28 -0.88
(B6.5XFAD x BXD100)F1-ADtg m 21.04 17.694   7 6.6879 0.841 2.27, 48.0 -0.89
(B6.5XFAD x BXD100)F1-Ntg f 31.623 11.148   4 5.5738 0.3525 21.86, 45.24 0.1
(B6.5XFAD x BXD100)F1-Ntg m 29.747 16.306   6 6.6569 0.5482 7.03, 49.33 -0.36
(B6.5XFAD x BXD14)F1-ADtg f 4.21 0.15556   2   0.11 0.037 4.1, 4.32 -1.52
(B6.5XFAD x BXD14)F1-Ntg f 35.105 10.486   2   7.415 0.2987 27.69, 42.52 0.31
(B6.5XFAD x BXD16)F1-ADtg f 46.315 18.852   4 9.4262 0.407 21.02, 65.82 0.97
(B6.5XFAD x BXD22)F1-ADtg f 33.57 43.826   2   30.99 1.3055 2.58, 64.56 0.22
(B6.5XFAD x BXD22)F1-Ntg f 36.695 4.4336   2   3.135 0.1208 33.56, 39.83 0.4
(B6.5XFAD x BXD32)F1-ADtg f 1.335 0.37477   2   0.265 0.2807 1.07, 1.6 -1.69
(B6.5XFAD x BXD32)F1-ADtg m 50.09 14.462   3 8.3495 0.2887 41.5, 66.79 0.86
(B6.5XFAD x BXD32)F1-Ntg f 10.357 6.3931   3 3.691 0.6173 2.98, 14.29 -1.16
(B6.5XFAD x BXD32)F1-Ntg m 61.48 20.655   2   14.605 0.3359 46.88, 76.09 1.54
(B6.5XFAD x BXD42)F1-ADtg f 28.985 18.01   2   12.735 0.6214 16.25, 41.72 -0.06
(B6.5XFAD x BXD42)F1-Ntg f 18.66 0.0   1   0.0 0.0 18.66, 18.66 -0.67
(B6.5XFAD x BXD44)F1-ADtg f 25.168 20.346   13 5.6431 0.8084 -0.28
(B6.5XFAD x BXD44)F1-ADtg m 27.01 18.647   8 6.5927 0.6904 1.87, 52.05 -0.53
(B6.5XFAD x BXD44)F1-Ntg f 45.41 0.0   1   0.0 0.0 45.41, 45.41 0.92
(B6.5XFAD x BXD44)F1-Ntg m 29.723 4.4705   3 2.581 0.1504 26.26, 34.77 -0.37
(B6.5XFAD x BXD51)F1-ADtg f 32.62 13.667   6 5.5795 0.419 9.39, 49.38 0.16
(B6.5XFAD x BXD51)F1-Ntg f 49.248 28.152   4 14.076 0.5717 8.82, 70.05 1.15
(B6.5XFAD x BXD55)F1-ADtg f 14.158 15.478   4 7.7391 1.0933 1.2, 36.6 -0.93
(B6.5XFAD x BXD55)F1-Ntg f 16.09 6.7599   2   4.78 0.4201 11.31, 20.87 -0.82
(B6.5XFAD x BXD56)F1-ADtg m 47.91 0.0   1   0.0 0.0 47.91, 47.91 0.73
(B6.5XFAD x BXD56)F1-Ntg f 31.855 43.607   2   30.835 1.3689 1.02, 62.69 0.12
(B6.5XFAD x BXD56)F1-Ntg m 3.03 0.0   1   0.0 0.0 3.03, 3.03 -1.97
(B6.5XFAD x BXD60)F1-ADtg f 17.92 8.0079   4 4.004 0.4469 7.03, 26.18 -0.71
(B6.5XFAD x BXD60)F1-ADtg m 23.844 5.498   5 2.4588 0.2306 18.61, 30.1 -0.72
(B6.5XFAD x BXD60)F1-Ntg f 29.907 7.062   3 4.0772 0.2361 22.75, 36.87 0.0
(B6.5XFAD x BXD61)F1-ADtg f 17.383 10.753   7 4.0644 0.6186 1.56, 30.99 -0.74
(B6.5XFAD x BXD61)F1-ADtg m 31.593 10.617   3 6.1299 0.3361 20.53, 41.7 -0.25
(B6.5XFAD x BXD61)F1-Ntg f 40.98 21.2   5 9.4809 0.5173 5.92, 61.46 0.66
(B6.5XFAD x BXD61)F1-Ntg m 40.193 17.698   6 7.2252 0.4403 18.16, 66.8 0.26
(B6.5XFAD x BXD62)F1-ADtg f 22.78 4.2312   3 2.4429 0.1857 18.25, 26.63 -0.42
(B6.5XFAD x BXD62)F1-ADtg m 26.715 10.897   2   7.705 0.4079 19.01, 34.42 -0.55
(B6.5XFAD x BXD62)F1-Ntg f 71.47 5.1083   3 2.9493 0.0715 65.76, 75.6 2.46
(B6.5XFAD x BXD62)F1-Ntg m 64.78 2.3547   3 1.3595 0.0363 62.11, 66.56 1.74
(B6.5XFAD x BXD65)F1-ADtg f 38.018 25.153   6 10.268 0.6616 13.09, 69.46 0.48
(B6.5XFAD x BXD65)F1-ADtg m 57.33 13.188   2   9.325 0.23 48.0, 66.65 1.29
(B6.5XFAD x BXD65)F1-Ntg f 57.55 16.287   8 5.7583 0.283 26.18, 74.49 1.64
(B6.5XFAD x BXD65)F1-Ntg m 80.5 3.2739   2   2.315 0.0407 78.18, 82.81 2.68
(B6.5XFAD x BXD66)F1-ADtg f 38.133 18.59   3 10.733 0.4875 20.29, 57.39 0.49
(B6.5XFAD x BXD66)F1-ADtg m 24.654 8.5638   5 3.8299 0.3474 13.05, 33.57 -0.67
(B6.5XFAD x BXD66)F1-Ntg f 12.11 0.0   1   0.0 0.0 12.11, 12.11 -1.06
(B6.5XFAD x BXD66)F1-Ntg m 34.083 17.512   3 10.11 0.5138 14.47, 48.15 -0.1
(B6.5XFAD x BXD68)F1-ADtg f 33.273 13.328   3 7.6948 0.4006 19.01, 45.41 0.2
(B6.5XFAD x BXD68)F1-ADtg m 43.594 11.676   7 4.4131 0.2678 31.43, 63.77 0.47
(B6.5XFAD x BXD68)F1-Ntg f 53.95 20.834   10 6.5883 0.3862 18.08, 83.85 1.43
(B6.5XFAD x BXD68)F1-Ntg m 53.54 39.011   2   27.585 0.7287 25.95, 81.12 1.06
(B6.5XFAD x BXD69)F1-ADtg f 21.847 12.628   6 5.1554 0.578 7.39, 39.76 -0.48
(B6.5XFAD x BXD69)F1-ADtg m 32.988 14.517   5 6.4922 0.4401 15.49, 47.33 -0.17
(B6.5XFAD x BXD69)F1-Ntg f 31.688 8.9614   4 4.4807 0.2828 24.35, 43.41 0.11
(B6.5XFAD x BXD69)F1-Ntg m 33.788 18.703   6 7.6354 0.5535 12.47, 59.1 -0.12
(B6.5XFAD x BXD70)F1-ADtg f 27.43 0.0   1   0.0 0.0 27.43, 27.43 -0.15
(B6.5XFAD x BXD70)F1-ADtg m 30.157 12.649   3 7.3031 0.4195 15.76, 39.49 -0.34
(B6.5XFAD x BXD70)F1-Ntg f 48.07 15.554   3 8.98 0.3236 30.81, 61.0 1.08
(B6.5XFAD x BXD70)F1-Ntg m 34.565 21.885   2   15.475 0.6332 19.09, 50.04 -0.08
(B6.5XFAD x BXD75)F1-ADtg f 4.02 6.9287   4 3.4644 1.7236 -1.54
(B6.5XFAD x BXD75)F1-ADtg m 16.968 8.4715   4 4.2358 0.4993 9.39, 26.39 -1.13
(B6.5XFAD x BXD75)F1-Ntg f 25.958 12.466   6 5.0893 0.4802 6.28, 39.49 -0.23
(B6.5XFAD x BXD75)F1-Ntg m 33.6 0.0   1   0.0 0.0 33.6, 33.6 -0.13
(B6.5XFAD x BXD77)F1-ADtg f 3.19 4.2846   3 2.4737 1.3431 -1.58
(B6.5XFAD x BXD77)F1-ADtg m 23.97 3.5678   3 2.0599 0.1488 19.86, 26.27 -0.71
(B6.5XFAD x BXD77)F1-Ntg f 26.566 11.36   10 3.5923 0.4276 10.02, 51.51 -0.2
(B6.5XFAD x BXD77)F1-Ntg m 24.265 14.009   6 5.7192 0.5773 13.18, 50.89 -0.69
(B6.5XFAD x BXD81)F1-ADtg f 14.862 7.9797   6 3.2577 0.5369 1.96, 26.0 -0.89
(B6.5XFAD x BXD81)F1-Ntg f 31.704 15.345   5 6.8626 0.484 15.63, 51.47 0.11
(B6.5XFAD x BXD87)F1-ADtg f 22.986 11.899   10 3.7629 0.5177 5.47, 49.13 -0.41
(B6.5XFAD x BXD87)F1-ADtg m 33.57 17.887   4 8.9434 0.5328 20.96, 59.9 -0.14
(B6.5XFAD x BXD87)F1-Ntg f 24.79 29.905   3 17.266 1.2063 2.98, 58.88 -0.3
(B6.5XFAD x BXD87)F1-Ntg m 55.1 0.0   1   0.0 0.0 55.1, 55.1 1.16
(B6.5XFAD x BXD89)F1-ADtg m 11.67 0.0   1   0.0 0.0 11.67, 11.67 -1.45
(B6.5XFAD x BXD89)F1-Ntg f 48.55 21.694   2   15.34 0.4468 33.21, 63.89 1.1
(B6.5XFAD x BXD89)F1-Ntg m 30.635 7.9974   2   5.655 0.2611 24.98, 36.29 -0.31
(B6.5XFAD x BXD99)F1-ADtg f 76.58 0.0   1   0.0 0.0 76.58, 76.58 2.77
(B6.5XFAD x BXD99)F1-Ntg f 31.3 0.0   1   0.0 0.0 31.3, 31.3 0.08
(B6.5XFAD x D2)F1-ADtg f 8.1094 11.439   17 2.7743 1.4106 -1.29
(B6.5XFAD x D2)F1-ADtg m 11.076 6.2136   8 2.1968 0.561 3.43, 19.63 -1.49
(B6.5XFAD x D2)F1-Ntg f 24.711 12.912   12 3.7273 0.5225 7.97, 43.37 -0.31
(B6.5XFAD x D2)F1-Ntg m 26.18 17.322   4 8.661 0.6616 2.0, 39.18 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-Ntg f 53.6144 4.8907 63.2525 43.9764
(B6.5XFAD x B6)F1-Ntg m 55.0345 4.4238 63.7525 46.3166
(B6.5XFAD x BXD100)F1-ADtg f 15.005 10.3747 35.4504 -5.4404
(B6.5XFAD x BXD100)F1-ADtg m 21.04 5.5455 31.9685 10.1115
(B6.5XFAD x BXD100)F1-Ntg f 31.6225 7.336 46.0796 17.1654
(B6.5XFAD x BXD100)F1-Ntg m 29.7467 5.9898 41.5508 17.9425
(B6.5XFAD x BXD32)F1-ADtg f 1.335 10.3747 21.7804 -19.1104
(B6.5XFAD x BXD32)F1-ADtg m 50.0933 8.4709 66.7869 33.3997
(B6.5XFAD x BXD32)F1-Ntg f 10.3567 8.4709 27.0503 -6.3369
(B6.5XFAD x BXD32)F1-Ntg m 61.485 10.3747 81.9304 41.0396
(B6.5XFAD x BXD44)F1-ADtg f 25.1685 4.0693 33.1878 17.1491
(B6.5XFAD x BXD44)F1-ADtg m 27.01 5.1873 37.2327 16.7873
(B6.5XFAD x BXD60)F1-ADtg f 17.92 7.336 32.3771 3.4629
(B6.5XFAD x BXD60)F1-ADtg m 23.844 6.5615 36.7748 10.9132
(B6.5XFAD x BXD61)F1-ADtg f 17.3829 5.5455 28.3114 6.4543
(B6.5XFAD x BXD61)F1-ADtg m 31.5933 8.4709 48.2869 14.8997
(B6.5XFAD x BXD61)F1-Ntg f 40.98 6.5615 53.9108 28.0492
(B6.5XFAD x BXD61)F1-Ntg m 40.1933 5.9898 51.9975 28.3892
(B6.5XFAD x BXD62)F1-ADtg f 22.78 8.4709 39.4736 6.0864
(B6.5XFAD x BXD62)F1-ADtg m 26.715 10.3747 47.1604 6.2696
(B6.5XFAD x BXD62)F1-Ntg f 71.4733 8.4709 88.1669 54.7797
(B6.5XFAD x BXD62)F1-Ntg m 64.78 8.4709 81.4736 48.0864
(B6.5XFAD x BXD65)F1-ADtg f 38.0183 5.9898 49.8225 26.2142
(B6.5XFAD x BXD65)F1-ADtg m 57.325 10.3747 77.7704 36.8796
(B6.5XFAD x BXD65)F1-Ntg f 57.5487 5.1873 67.7715 47.326
(B6.5XFAD x BXD65)F1-Ntg m 80.495 10.3747 100.9404 60.0496
(B6.5XFAD x BXD66)F1-ADtg f 38.1333 8.4709 54.8269 21.4397
(B6.5XFAD x BXD66)F1-ADtg m 24.654 6.5615 37.5848 11.7232
(B6.5XFAD x BXD68)F1-ADtg f 33.2733 8.4709 49.9669 16.5797
(B6.5XFAD x BXD68)F1-ADtg m 43.5943 5.5455 54.5228 32.6658
(B6.5XFAD x BXD68)F1-Ntg f 53.948 4.6397 63.0915 44.8045
(B6.5XFAD x BXD68)F1-Ntg m 53.535 10.3747 73.9804 33.0896
(B6.5XFAD x BXD69)F1-ADtg f 21.8467 5.9898 33.6508 10.0425
(B6.5XFAD x BXD69)F1-ADtg m 32.988 6.5615 45.9188 20.0572
(B6.5XFAD x BXD69)F1-Ntg f 31.6875 7.336 46.1446 17.2304
(B6.5XFAD x BXD69)F1-Ntg m 33.7883 5.9898 45.5925 21.9842
(B6.5XFAD x BXD70)F1-Ntg f 48.07 8.4709 64.7636 31.3764
(B6.5XFAD x BXD70)F1-Ntg m 34.565 10.3747 55.0104 14.1196
(B6.5XFAD x BXD75)F1-ADtg f 4.02 7.336 18.4771 -10.4371
(B6.5XFAD x BXD75)F1-ADtg m 16.9675 7.336 31.4246 2.5104
(B6.5XFAD x BXD77)F1-ADtg f 3.19 8.4709 19.8836 -13.5036
(B6.5XFAD x BXD77)F1-ADtg m 23.97 8.4709 40.6636 7.2764
(B6.5XFAD x BXD77)F1-Ntg f 26.566 4.6397 35.7095 17.4225
(B6.5XFAD x BXD77)F1-Ntg m 24.265 5.9898 36.0692 12.4608
(B6.5XFAD x BXD87)F1-ADtg f 22.986 4.6397 32.1295 13.8425
(B6.5XFAD x BXD87)F1-ADtg m 33.57 7.336 48.0271 19.1129
(B6.5XFAD x BXD89)F1-Ntg f 48.55 10.3747 68.9954 28.1046
(B6.5XFAD x BXD89)F1-Ntg m 30.635 10.3747 51.0804 10.1896
(B6.5XFAD x D2)F1-ADtg f 8.1094 3.5585 15.1221 1.0967
(B6.5XFAD x D2)F1-ADtg m 11.0762 5.1873 21.299 0.8535
(B6.5XFAD x D2)F1-Ntg f 24.7108 4.2354 33.0576 16.364
(B6.5XFAD x D2)F1-Ntg m 26.18 7.336 40.6371 11.7229


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-Ntg both 54.3245 3.2973 60.8225 47.8265
(B6.5XFAD x BXD100)F1-ADtg both 18.0225 5.8819 29.614 6.431
(B6.5XFAD x BXD100)F1-Ntg both 30.6846 4.7354 40.0166 21.3526
(B6.5XFAD x BXD32)F1-ADtg both 25.7142 6.6968 38.9116 12.5167
(B6.5XFAD x BXD32)F1-Ntg both 35.9208 6.6968 49.1183 22.7234
(B6.5XFAD x BXD44)F1-ADtg both 26.0892 3.2965 32.5856 19.5928
(B6.5XFAD x BXD60)F1-ADtg both 20.882 4.9211 30.5801 11.1839
(B6.5XFAD x BXD61)F1-ADtg both 24.4881 5.0623 34.4644 14.5118
(B6.5XFAD x BXD61)F1-Ntg both 40.5867 4.4422 49.3409 31.8325
(B6.5XFAD x BXD62)F1-ADtg both 24.7475 6.6968 37.945 11.55
(B6.5XFAD x BXD62)F1-Ntg both 68.1267 5.9898 79.9308 56.3225
(B6.5XFAD x BXD65)F1-ADtg both 47.6717 5.9898 59.4758 35.8675
(B6.5XFAD x BXD65)F1-Ntg both 69.0219 5.7996 80.4512 57.5925
(B6.5XFAD x BXD66)F1-ADtg both 31.3937 5.3574 41.9516 20.8357
(B6.5XFAD x BXD68)F1-ADtg both 38.4338 5.0623 48.4101 28.4575
(B6.5XFAD x BXD68)F1-Ntg both 53.7415 5.6824 64.9399 42.5431
(B6.5XFAD x BXD69)F1-ADtg both 27.4173 4.4422 36.1715 18.6631
(B6.5XFAD x BXD69)F1-Ntg both 32.7379 4.7354 42.0699 23.4059
(B6.5XFAD x BXD70)F1-Ntg both 41.3175 6.6968 54.515 28.12
(B6.5XFAD x BXD75)F1-ADtg both 10.4937 5.1873 20.7165 0.271
(B6.5XFAD x BXD77)F1-ADtg both 13.58 5.9898 25.3842 1.7758
(B6.5XFAD x BXD77)F1-Ntg both 25.4155 3.7883 32.8811 17.9499
(B6.5XFAD x BXD87)F1-ADtg both 28.278 4.34 36.8309 19.7251
(B6.5XFAD x BXD89)F1-Ntg both 39.5925 7.336 54.0496 25.1354
(B6.5XFAD x D2)F1-ADtg both 9.5928 3.1453 15.7913 3.3944
(B6.5XFAD x D2)F1-Ntg both 25.4454 4.2354 33.7922 17.0986




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA