Phenotype measure:   Neuner1   cfm_6mo_bin5

ID, description, units MPD:65978   cfm_6mo_bin5   percentage of time spent freezing at 6 mo of age, day 2 contextual fear memory, 10 min test   [%]  5th 2 min
Data set, strains Neuner1   F1 AD-BXD   50 strains     sex: both     age: 23-25wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - percentage of time spent freezing at 6 mo of age, day 2 contextual fear memory, 10 min test 5th 2 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested50 strains27 strains
Mean of the strain means41.257   % 33.679   %
Median of the strain means43.758   % 31.92   %
SD of the strain means± 16.637 ± 17.691
Coefficient of variation (CV)0.4032 0.5253
Min–max range of strain means8.925   –   73.94   % 8.24   –   68.97   %
Mean sample size per strain3.7   mice 2.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 216.8255 216.8255 0.5175 0.4737
strain 13 22333.6965 1717.9767 4.1002 < 0.0001
sex:strain 13 5341.805 410.9081 0.9807 0.476
Residuals 95 39804.9718 418.9997


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg f 62.5 24.621   2   17.41 0.3939 45.09, 79.91 1.28
(B6.5XFAD x B6)F1-ADtg m 68.9 23.068   7 8.7189 0.3348 28.79, 92.86 1.99
(B6.5XFAD x B6)F1-Ntg f 51.69 23.0   6 9.3896 0.445 15.14, 79.46 0.63
(B6.5XFAD x B6)F1-Ntg m 63.04 6.8242   4 3.4121 0.1082 56.03, 71.94 1.66
(B6.5XFAD x BXD100)F1-ADtg f 27.453 7.4862   4 3.7431 0.2727 21.83, 37.64 -0.83
(B6.5XFAD x BXD100)F1-ADtg m 45.88 1.5698   2   1.11 0.0342 44.77, 46.99 0.69
(B6.5XFAD x BXD100)F1-Ntg f 42.475 0.09192   2   0.065 0.0022 42.41, 42.54 0.07
(B6.5XFAD x BXD14)F1-ADtg f 53.33 24.105   5 10.78 0.452 26.79, 92.87 0.73
(B6.5XFAD x BXD14)F1-Ntg f 49.445 42.773   2   30.245 0.8651 19.2, 79.69 0.49
(B6.5XFAD x BXD16)F1-ADtg f 32.483 13.331   4 6.6657 0.4104 20.94, 46.99 -0.53
(B6.5XFAD x BXD22)F1-ADtg f 15.167 6.453   3 3.7256 0.4255 7.81, 19.87 -1.57
(B6.5XFAD x BXD22)F1-Ntg f 15.62 0.0   1   0.0 0.0 15.62, 15.62 -1.54
(B6.5XFAD x BXD2)F1-ADtg f 47.337 34.432   4 17.216 0.7274 1.12, 75.0 0.37
(B6.5XFAD x BXD2)F1-Ntg f 37.404 5.3423   5 2.3891 0.1428 30.73, 43.88 -0.23
(B6.5XFAD x BXD32)F1-ADtg f 35.77 30.008   4 15.004 0.8389 2.68, 67.63 -0.33
(B6.5XFAD x BXD32)F1-ADtg m 20.535 25.887   2   18.305 1.2606 2.23, 38.84 -0.74
(B6.5XFAD x BXD32)F1-Ntg f 22.27 0.0   1   0.0 0.0 22.27, 22.27 -1.14
(B6.5XFAD x BXD32)F1-Ntg m 68.97 30.618   2   21.65 0.4439 47.32, 90.62 1.99
(B6.5XFAD x BXD34)F1-ADtg f 51.98 25.492   9 8.4974 0.4904 16.96, 86.38 0.64
(B6.5XFAD x BXD34)F1-Ntg f 59.37 17.445   11 5.2597 0.2938 34.37, 83.52 1.09
(B6.5XFAD x BXD42)F1-ADtg f 54.59 17.521   6 7.1529 0.321 22.77, 66.96 0.8
(B6.5XFAD x BXD42)F1-Ntg f 48.492 23.302   4 11.651 0.4805 25.84, 76.84 0.43
(B6.5XFAD x BXD44)F1-ADtg f 46.375 0.55861   2   0.395 0.012 45.98, 46.77 0.31
(B6.5XFAD x BXD44)F1-ADtg m 24.44 9.9419   2   7.03 0.4068 17.41, 31.47 -0.52
(B6.5XFAD x BXD44)F1-Ntg f 28.57 17.041   2   12.05 0.5965 16.52, 40.62 -0.76
(B6.5XFAD x BXD44)F1-Ntg m 10.69 0.0   1   0.0 0.0 10.69, 10.69 -1.3
(B6.5XFAD x BXD51)F1-ADtg f 26.09 10.387   3 5.997 0.3981 15.18, 35.86 -0.91
(B6.5XFAD x BXD51)F1-Ntg f 45.9 30.675   3 17.71 0.6683 23.44, 80.85 0.28
(B6.5XFAD x BXD55)F1-ADtg f 33.097 32.423   3 18.719 0.9796 10.94, 70.31 -0.49
(B6.5XFAD x BXD55)F1-Ntg f 22.718 14.637   4 7.3186 0.6443 1.12, 33.18 -1.11
(B6.5XFAD x BXD56)F1-ADtg f 55.12 2.6799   2   1.895 0.0486 53.23, 57.02 0.83
(B6.5XFAD x BXD56)F1-Ntg f 66.16 11.311   3 6.5304 0.171 53.12, 73.27 1.5
(B6.5XFAD x BXD60)F1-ADtg f 57.14 9.7864   2   6.92 0.1713 50.22, 64.06 0.95
(B6.5XFAD x BXD60)F1-ADtg m 18.41 15.005   2   10.61 0.815 7.8, 29.02 -0.86
(B6.5XFAD x BXD60)F1-Ntg f 13.055 12.155   2   8.595 0.9311 4.46, 21.65 -1.7
(B6.5XFAD x BXD61)F1-ADtg f 57.64 12.862   2   9.095 0.2231 48.55, 66.74 0.98
(B6.5XFAD x BXD61)F1-ADtg m 42.185 29.988   2   21.205 0.7109 20.98, 63.39 0.48
(B6.5XFAD x BXD61)F1-Ntg f 69.64 0.0   1   0.0 0.0 69.64, 69.64 1.71
(B6.5XFAD x BXD61)F1-Ntg m 25.67 12.94   2   9.15 0.5041 16.52, 34.82 -0.45
(B6.5XFAD x BXD62)F1-ADtg f 61.83 0.0   1   0.0 0.0 61.83, 61.83 1.24
(B6.5XFAD x BXD62)F1-ADtg m 61.5 1.1102   2   0.785 0.0181 60.71, 62.28 1.57
(B6.5XFAD x BXD62)F1-Ntg f 27.34 3.9457   2   2.79 0.1443 24.55, 30.13 -0.84
(B6.5XFAD x BXD62)F1-Ntg m 37.72 0.0   1   0.0 0.0 37.72, 37.72 0.23
(B6.5XFAD x BXD65)F1-ADtg f 50.22 35.098   3 20.264 0.6989 9.82, 73.21 0.54
(B6.5XFAD x BXD65)F1-ADtg m 31.92 16.094   2   11.38 0.5042 20.54, 43.3 -0.1
(B6.5XFAD x BXD65)F1-Ntg f 73.94 0.0   1   0.0 0.0 73.94, 73.94 1.96
(B6.5XFAD x BXD65)F1-Ntg m 20.337 23.096   4 11.548 1.1357 4.01, 53.01 -0.75
(B6.5XFAD x BXD66)F1-ADtg f 30.8 0.0   1   0.0 0.0 30.8, 30.8 -0.63
(B6.5XFAD x BXD66)F1-ADtg m 19.8 20.134   4 10.067 1.0168 9.6, 50.0 -0.78
(B6.5XFAD x BXD66)F1-Ntg f 43.65 0.0   1   0.0 0.0 43.65, 43.65 0.14
(B6.5XFAD x BXD66)F1-Ntg m 9.6 0.0   1   0.0 0.0 9.6, 9.6 -1.36
(B6.5XFAD x BXD68)F1-ADtg f 64.23 31.2   6 12.737 0.4858 22.54, 100.0 1.38
(B6.5XFAD x BXD68)F1-ADtg m 17.15 0.0   1   0.0 0.0 17.15, 17.15 -0.93
(B6.5XFAD x BXD68)F1-Ntg f 43.866 24.16   9 8.0532 0.5508 9.15, 79.24 0.16
(B6.5XFAD x BXD68)F1-Ntg m 28.06 9.4469   2   6.68 0.3367 21.38, 34.74 -0.32
(B6.5XFAD x BXD69)F1-ADtg f 39.5 43.897   2   31.04 1.1113 8.46, 70.54 -0.11
(B6.5XFAD x BXD69)F1-ADtg m 41.29 0.0   1   0.0 0.0 41.29, 41.29 0.43
(B6.5XFAD x BXD69)F1-Ntg f 44.32 0.0   1   0.0 0.0 44.32, 44.32 0.18
(B6.5XFAD x BXD75)F1-ADtg f 46.532 12.84   4 6.4198 0.2759 28.57, 58.57 0.32
(B6.5XFAD x BXD75)F1-ADtg m 41.185 7.4176   2   5.245 0.1801 35.94, 46.43 0.42
(B6.5XFAD x BXD75)F1-Ntg f 32.887 27.258   3 15.738 0.8289 14.03, 64.14 -0.5
(B6.5XFAD x BXD75)F1-Ntg m 44.42 0.0   1   0.0 0.0 44.42, 44.42 0.61
(B6.5XFAD x BXD77)F1-ADtg f 54.36 5.5225   2   3.905 0.1016 50.45, 58.26 0.79
(B6.5XFAD x BXD77)F1-ADtg m 8.24 0.0   1   0.0 0.0 8.24, 8.24 -1.44
(B6.5XFAD x BXD77)F1-Ntg f 8.925 8.2095   2   5.805 0.9198 3.12, 14.73 -1.94
(B6.5XFAD x BXD77)F1-Ntg m 17.3 12.473   2   8.82 0.721 8.48, 26.12 -0.93
(B6.5XFAD x BXD81)F1-ADtg f 20.115 18.436   6 7.5264 0.9165 2.0, 45.98 -1.27
(B6.5XFAD x BXD81)F1-Ntg f 33.777 19.389   3 11.194 0.574 21.38, 56.12 -0.45
(B6.5XFAD x BXD87)F1-ADtg f 16.42 16.712   3 9.6488 1.0178 -1.49
(B6.5XFAD x BXD87)F1-ADtg m 34.15 0.0   1   0.0 0.0 34.15, 34.15 0.03
(B6.5XFAD x BXD87)F1-Ntg f 29.643 16.115   3 9.3037 0.5436 16.04, 47.44 -0.7
(B6.5XFAD x BXD87)F1-Ntg m 48.36 34.759   3 20.068 0.7188 16.96, 85.71 0.83
(B6.5XFAD x BXD99)F1-ADtg f 63.67 4.0755   3 2.353 0.064 59.24, 67.26 1.35
(B6.5XFAD x D2)F1-ADtg f 33.644 21.842   16 5.4606 0.6492 -0.46
(B6.5XFAD x D2)F1-ADtg m 34.508 17.943   13 4.9764 0.5199 0.05
(B6.5XFAD x D2)F1-Ntg f 14.308 12.198   11 3.6778 0.8525 2.01, 36.53 -1.62
(B6.5XFAD x D2)F1-Ntg m 25.074 25.346   8 8.9613 1.0109 2.23, 63.39 -0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg f 62.5 14.4741 91.2347 33.7653
(B6.5XFAD x B6)F1-ADtg m 68.8971 7.7367 84.2565 53.5378
(B6.5XFAD x B6)F1-Ntg f 51.6867 8.3566 68.2767 35.0967
(B6.5XFAD x B6)F1-Ntg m 63.0425 10.2347 83.361 42.724
(B6.5XFAD x BXD100)F1-ADtg f 27.4525 10.2347 47.771 7.134
(B6.5XFAD x BXD100)F1-ADtg m 45.88 14.4741 74.6147 17.1453
(B6.5XFAD x BXD32)F1-ADtg f 35.77 10.2347 56.0885 15.4515
(B6.5XFAD x BXD32)F1-ADtg m 20.535 14.4741 49.2697 -8.1997
(B6.5XFAD x BXD44)F1-ADtg f 46.375 14.4741 75.1097 17.6403
(B6.5XFAD x BXD44)F1-ADtg m 24.44 14.4741 53.1747 -4.2947
(B6.5XFAD x BXD60)F1-ADtg f 57.14 14.4741 85.8747 28.4053
(B6.5XFAD x BXD60)F1-ADtg m 18.41 14.4741 47.1447 -10.3247
(B6.5XFAD x BXD61)F1-ADtg f 57.645 14.4741 86.3797 28.9103
(B6.5XFAD x BXD61)F1-ADtg m 42.185 14.4741 70.9197 13.4503
(B6.5XFAD x BXD65)F1-ADtg f 50.22 11.8181 73.6818 26.7582
(B6.5XFAD x BXD65)F1-ADtg m 31.92 14.4741 60.6547 3.1853
(B6.5XFAD x BXD68)F1-Ntg f 43.8656 6.8232 57.4112 30.3199
(B6.5XFAD x BXD68)F1-Ntg m 28.06 14.4741 56.7947 -0.6747
(B6.5XFAD x BXD75)F1-ADtg f 46.5325 10.2347 66.851 26.214
(B6.5XFAD x BXD75)F1-ADtg m 41.185 14.4741 69.9197 12.4503
(B6.5XFAD x BXD77)F1-Ntg f 8.925 14.4741 37.6597 -19.8097
(B6.5XFAD x BXD77)F1-Ntg m 17.3 14.4741 46.0347 -11.4347
(B6.5XFAD x BXD87)F1-Ntg f 29.6433 11.8181 53.1052 6.1815
(B6.5XFAD x BXD87)F1-Ntg m 48.36 11.8181 71.8218 24.8982
(B6.5XFAD x D2)F1-ADtg f 33.6437 5.1174 43.803 23.4845
(B6.5XFAD x D2)F1-ADtg m 34.5085 5.6772 45.7792 23.2378
(B6.5XFAD x D2)F1-Ntg f 14.3082 6.1718 26.5607 2.0556
(B6.5XFAD x D2)F1-Ntg m 25.0737 7.2371 39.4411 10.7064


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg both 65.6986 8.206 81.9896 49.4075
(B6.5XFAD x B6)F1-Ntg both 57.3646 6.6065 70.4801 44.249
(B6.5XFAD x BXD100)F1-ADtg both 36.6663 8.8635 54.2626 19.0699
(B6.5XFAD x BXD32)F1-ADtg both 28.1525 8.8635 45.7489 10.5561
(B6.5XFAD x BXD44)F1-ADtg both 35.4075 10.2347 55.726 15.089
(B6.5XFAD x BXD60)F1-ADtg both 37.775 10.2347 58.0935 17.4565
(B6.5XFAD x BXD61)F1-ADtg both 49.915 10.2347 70.2335 29.5965
(B6.5XFAD x BXD65)F1-ADtg both 41.07 9.343 59.6182 22.5218
(B6.5XFAD x BXD68)F1-Ntg both 35.9628 8.0009 51.8465 20.0791
(B6.5XFAD x BXD75)F1-ADtg both 43.8587 8.8635 61.4551 26.2624
(B6.5XFAD x BXD77)F1-Ntg both 13.1125 10.2347 33.431 -7.206
(B6.5XFAD x BXD87)F1-Ntg both 39.0017 8.3566 55.5917 22.4117
(B6.5XFAD x D2)F1-ADtg both 34.0761 3.8216 41.6629 26.4893
(B6.5XFAD x D2)F1-Ntg both 19.691 4.7557 29.1322 10.2498




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA