Phenotype measure:   Neuner1   cfm_6mo_bin2

ID, description, units MPD:65975   cfm_6mo_bin2   percentage of time spent freezing at 6 mo of age, day 2 contextual fear memory, 10 min test   [%]  2nd 2 min
Data set, strains Neuner1   F1 AD-BXD   50 strains     sex: both     age: 23-25wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - percentage of time spent freezing at 6 mo of age, day 2 contextual fear memory, 10 min test 2nd 2 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested50 strains27 strains
Mean of the strain means47.556   % 46.173   %
Median of the strain means50.01   % 46.88   %
SD of the strain means± 17.666 ± 16.734
Coefficient of variation (CV)0.3715 0.3624
Min–max range of strain means7.13   –   88.89   % 18.89   –   77.18   %
Mean sample size per strain3.7   mice 2.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 232.4275 232.4275 0.4661 0.4964
strain 13 14864.7851 1143.445 2.2931 0.011
sex:strain 13 2426.6723 186.6671 0.3744 0.9748
Residuals 95 47370.9062 498.6411


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg f 64.89 11.003   2   7.78 0.1696 57.11, 72.67 0.98
(B6.5XFAD x B6)F1-ADtg m 77.18 20.649   7 7.8044 0.2675 38.22, 96.66 1.85
(B6.5XFAD x B6)F1-Ntg f 58.11 20.524   6 8.379 0.3532 23.39, 84.89 0.6
(B6.5XFAD x B6)F1-Ntg m 62.93 9.4955   4 4.7477 0.1509 52.12, 74.89 1.0
(B6.5XFAD x BXD100)F1-ADtg f 50.39 15.395   4 7.6975 0.3055 29.62, 65.48 0.16
(B6.5XFAD x BXD100)F1-ADtg m 32.735 14.489   2   10.245 0.4426 22.49, 42.98 -0.8
(B6.5XFAD x BXD100)F1-Ntg f 16.23 10.988   2   7.77 0.677 8.46, 24.0 -1.77
(B6.5XFAD x BXD14)F1-ADtg f 51.25 26.94   5 12.048 0.5257 21.33, 85.08 0.21
(B6.5XFAD x BXD14)F1-Ntg f 51.43 40.666   2   28.755 0.7908 22.67, 80.18 0.22
(B6.5XFAD x BXD16)F1-ADtg f 52.62 28.969   4 14.484 0.5506 14.7, 77.51 0.29
(B6.5XFAD x BXD22)F1-ADtg f 33.917 23.684   3 13.674 0.6983 13.11, 59.69 -0.77
(B6.5XFAD x BXD22)F1-Ntg f 41.43 0.0   1   0.0 0.0 41.43, 41.43 -0.35
(B6.5XFAD x BXD2)F1-ADtg f 55.32 34.937   4 17.468 0.6315 4.89, 82.85 0.44
(B6.5XFAD x BXD2)F1-Ntg f 56.0 29.004   5 12.971 0.5179 6.44, 81.96 0.48
(B6.5XFAD x BXD32)F1-ADtg f 47.328 35.927   4 17.963 0.7591 -0.01
(B6.5XFAD x BXD32)F1-ADtg m 34.11 46.669   2   33.0 1.3682 1.11, 67.11 -0.72
(B6.5XFAD x BXD32)F1-Ntg f 46.99 0.0   1   0.0 0.0 46.99, 46.99 -0.03
(B6.5XFAD x BXD32)F1-Ntg m 68.38 10.713   2   7.575 0.1567 60.8, 75.95 1.33
(B6.5XFAD x BXD34)F1-ADtg f 66.74 19.713   9 6.5711 0.2954 34.3, 88.67 1.09
(B6.5XFAD x BXD34)F1-Ntg f 72.06 18.592   11 5.6056 0.258 36.0, 95.77 1.39
(B6.5XFAD x BXD42)F1-ADtg f 60.87 12.752   6 5.2061 0.2095 42.32, 76.44 0.75
(B6.5XFAD x BXD42)F1-Ntg f 33.045 17.152   4 8.5761 0.5191 11.36, 51.56 -0.82
(B6.5XFAD x BXD44)F1-ADtg f 56.8 13.23   2   9.355 0.2329 47.44, 66.15 0.52
(B6.5XFAD x BXD44)F1-ADtg m 55.78 8.4853   2   6.0 0.1521 49.78, 61.78 0.57
(B6.5XFAD x BXD44)F1-Ntg f 26.71 18.286   2   12.93 0.6846 13.78, 39.64 -1.18
(B6.5XFAD x BXD44)F1-Ntg m 26.28 0.0   1   0.0 0.0 26.28, 26.28 -1.19
(B6.5XFAD x BXD51)F1-ADtg f 49.693 24.131   3 13.932 0.4856 21.83, 63.78 0.12
(B6.5XFAD x BXD51)F1-Ntg f 63.03 37.181   3 21.467 0.5899 20.71, 90.44 0.88
(B6.5XFAD x BXD55)F1-ADtg f 32.743 28.452   3 16.427 0.8689 4.67, 61.56 -0.84
(B6.5XFAD x BXD55)F1-Ntg f 23.527 12.784   4 6.392 0.5434 8.02, 39.2 -1.36
(B6.5XFAD x BXD56)F1-ADtg f 54.23 49.292   2   34.855 0.9089 19.38, 89.09 0.38
(B6.5XFAD x BXD56)F1-Ntg f 72.1 5.1506   3 2.9737 0.0714 66.82, 77.11 1.39
(B6.5XFAD x BXD60)F1-ADtg f 63.47 5.9892   2   4.235 0.0944 59.24, 67.71 0.9
(B6.5XFAD x BXD60)F1-ADtg m 46.88 2.0506   2   1.45 0.0437 45.43, 48.33 0.04
(B6.5XFAD x BXD60)F1-Ntg f 24.56 18.385   2   13.0 0.7486 11.56, 37.56 -1.3
(B6.5XFAD x BXD61)F1-ADtg f 50.78 24.883   2   17.595 0.4901 33.18, 68.37 0.18
(B6.5XFAD x BXD61)F1-ADtg m 55.5 0.38891   2   0.275 0.007 55.23, 55.78 0.56
(B6.5XFAD x BXD61)F1-Ntg f 45.21 0.0   1   0.0 0.0 45.21, 45.21 -0.13
(B6.5XFAD x BXD61)F1-Ntg m 34.91 17.565   2   12.42 0.5031 22.49, 47.33 -0.67
(B6.5XFAD x BXD62)F1-ADtg f 88.89 0.0   1   0.0 0.0 88.89, 88.89 2.34
(B6.5XFAD x BXD62)F1-ADtg m 66.66 10.684   2   7.555 0.1603 59.11, 74.22 1.22
(B6.5XFAD x BXD62)F1-Ntg f 47.445 12.099   2   8.555 0.255 38.89, 56.0 -0.01
(B6.5XFAD x BXD62)F1-Ntg m 73.94 0.0   1   0.0 0.0 73.94, 73.94 1.66
(B6.5XFAD x BXD65)F1-ADtg f 52.22 28.73   3 16.587 0.5501 24.67, 82.0 0.26
(B6.5XFAD x BXD65)F1-ADtg m 46.95 16.433   2   11.62 0.35 35.33, 58.57 0.05
(B6.5XFAD x BXD65)F1-Ntg f 60.8 0.0   1   0.0 0.0 60.8, 60.8 0.75
(B6.5XFAD x BXD65)F1-Ntg m 45.495 34.382   4 17.191 0.7557 2.44, 84.22 -0.04
(B6.5XFAD x BXD66)F1-ADtg f 7.13 0.0   1   0.0 0.0 7.13, 7.13 -2.29
(B6.5XFAD x BXD66)F1-ADtg m 54.84 23.965   4 11.983 0.437 18.89, 66.82 0.52
(B6.5XFAD x BXD66)F1-Ntg f 14.48 0.0   1   0.0 0.0 14.48, 14.48 -1.87
(B6.5XFAD x BXD66)F1-Ntg m 18.89 0.0   1   0.0 0.0 18.89, 18.89 -1.63
(B6.5XFAD x BXD68)F1-ADtg f 74.77 18.775   6 7.6647 0.2511 43.43, 93.78 1.54
(B6.5XFAD x BXD68)F1-ADtg m 39.87 0.0   1   0.0 0.0 39.87, 39.87 -0.38
(B6.5XFAD x BXD68)F1-Ntg f 49.499 25.385   9 8.4615 0.5128 11.58, 87.75 0.11
(B6.5XFAD x BXD68)F1-Ntg m 60.02 8.3439   2   5.9 0.139 54.12, 65.92 0.83
(B6.5XFAD x BXD69)F1-ADtg f 71.05 5.3528   2   3.785 0.0753 67.26, 74.83 1.33
(B6.5XFAD x BXD69)F1-ADtg m 20.71 0.0   1   0.0 0.0 20.71, 20.71 -1.52
(B6.5XFAD x BXD69)F1-Ntg f 42.32 0.0   1   0.0 0.0 42.32, 42.32 -0.3
(B6.5XFAD x BXD75)F1-ADtg f 44.265 18.439   4 9.2195 0.4166 28.06, 65.48 -0.19
(B6.5XFAD x BXD75)F1-ADtg m 53.94 12.968   2   9.17 0.2404 44.77, 63.11 0.46
(B6.5XFAD x BXD75)F1-Ntg f 42.257 34.088   3 19.681 0.8067 17.37, 81.11 -0.3
(B6.5XFAD x BXD75)F1-Ntg m 53.33 0.0   1   0.0 0.0 53.33, 53.33 0.43
(B6.5XFAD x BXD77)F1-ADtg f 41.06 20.676   2   14.62 0.5036 26.44, 55.68 -0.37
(B6.5XFAD x BXD77)F1-ADtg m 19.15 0.0   1   0.0 0.0 19.15, 19.15 -1.61
(B6.5XFAD x BXD77)F1-Ntg f 11.025 10.232   2   7.235 0.9281 3.79, 18.26 -2.07
(B6.5XFAD x BXD77)F1-Ntg m 28.485 12.311   2   8.705 0.4322 19.78, 37.19 -1.06
(B6.5XFAD x BXD81)F1-ADtg f 33.163 12.631   6 5.1566 0.3809 18.71, 53.56 -0.81
(B6.5XFAD x BXD81)F1-Ntg f 50.33 16.066   3 9.2756 0.3192 35.63, 67.48 0.16
(B6.5XFAD x BXD87)F1-ADtg f 19.82 22.855   3 13.196 1.1531 0.89, 45.21 -1.57
(B6.5XFAD x BXD87)F1-ADtg m 29.56 0.0   1   0.0 0.0 29.56, 29.56 -0.99
(B6.5XFAD x BXD87)F1-Ntg f 52.86 18.31   3 10.571 0.3464 33.85, 70.38 0.3
(B6.5XFAD x BXD87)F1-Ntg m 57.92 17.263   3 9.9666 0.298 43.65, 77.11 0.7
(B6.5XFAD x BXD99)F1-ADtg f 70.32 10.935   3 6.3131 0.1555 63.03, 82.89 1.29
(B6.5XFAD x D2)F1-ADtg f 49.573 24.42   16 6.105 0.4926 0.11
(B6.5XFAD x D2)F1-ADtg m 42.87 18.849   13 5.2278 0.4397 15.81, 80.89 -0.2
(B6.5XFAD x D2)F1-Ntg f 33.039 28.682   11 8.6478 0.8681 0.89, 83.96 -0.82
(B6.5XFAD x D2)F1-Ntg m 39.366 21.201   8 7.4956 0.5385 8.44, 67.48 -0.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg f 64.89 15.7899 96.2369 33.5431
(B6.5XFAD x B6)F1-ADtg m 77.1771 8.4401 93.9328 60.4215
(B6.5XFAD x B6)F1-Ntg f 58.1133 9.1163 76.2115 40.0152
(B6.5XFAD x B6)F1-Ntg m 62.9325 11.1651 85.0981 40.7669
(B6.5XFAD x BXD100)F1-ADtg f 50.39 11.1651 72.5556 28.2244
(B6.5XFAD x BXD100)F1-ADtg m 32.735 15.7899 64.0819 1.3881
(B6.5XFAD x BXD32)F1-ADtg f 47.3275 11.1651 69.4931 25.1619
(B6.5XFAD x BXD32)F1-ADtg m 34.11 15.7899 65.4569 2.7631
(B6.5XFAD x BXD44)F1-ADtg f 56.795 15.7899 88.1419 25.4481
(B6.5XFAD x BXD44)F1-ADtg m 55.78 15.7899 87.1269 24.4331
(B6.5XFAD x BXD60)F1-ADtg f 63.475 15.7899 94.8219 32.1281
(B6.5XFAD x BXD60)F1-ADtg m 46.88 15.7899 78.2269 15.5331
(B6.5XFAD x BXD61)F1-ADtg f 50.775 15.7899 82.1219 19.4281
(B6.5XFAD x BXD61)F1-ADtg m 55.505 15.7899 86.8519 24.1581
(B6.5XFAD x BXD65)F1-ADtg f 52.2233 12.8924 77.818 26.6287
(B6.5XFAD x BXD65)F1-ADtg m 46.95 15.7899 78.2969 15.6031
(B6.5XFAD x BXD68)F1-Ntg f 49.4989 7.4434 64.276 34.7218
(B6.5XFAD x BXD68)F1-Ntg m 60.02 15.7899 91.3669 28.6731
(B6.5XFAD x BXD75)F1-ADtg f 44.265 11.1651 66.4306 22.0994
(B6.5XFAD x BXD75)F1-ADtg m 53.94 15.7899 85.2869 22.5931
(B6.5XFAD x BXD77)F1-Ntg f 11.025 15.7899 42.3719 -20.3219
(B6.5XFAD x BXD77)F1-Ntg m 28.485 15.7899 59.8319 -2.8619
(B6.5XFAD x BXD87)F1-Ntg f 52.8567 12.8924 78.4513 27.262
(B6.5XFAD x BXD87)F1-Ntg m 57.9233 12.8924 83.518 32.3287
(B6.5XFAD x D2)F1-ADtg f 49.5731 5.5826 60.6559 38.4903
(B6.5XFAD x D2)F1-ADtg m 42.87 6.1933 55.1653 30.5747
(B6.5XFAD x D2)F1-Ntg f 33.0391 6.7328 46.4055 19.6727
(B6.5XFAD x D2)F1-Ntg m 39.3663 7.8949 55.0397 23.6928


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-ADtg both 71.0336 8.952 88.8056 53.2616
(B6.5XFAD x B6)F1-Ntg both 60.5229 7.2071 74.8307 46.2151
(B6.5XFAD x BXD100)F1-ADtg both 41.5625 9.6693 60.7585 22.3665
(B6.5XFAD x BXD32)F1-ADtg both 40.7188 9.6693 59.9147 21.5228
(B6.5XFAD x BXD44)F1-ADtg both 56.2875 11.1651 78.4531 34.1219
(B6.5XFAD x BXD60)F1-ADtg both 55.1775 11.1651 77.3431 33.0119
(B6.5XFAD x BXD61)F1-ADtg both 53.14 11.1651 75.3056 30.9744
(B6.5XFAD x BXD65)F1-ADtg both 49.5867 10.1923 69.821 29.3523
(B6.5XFAD x BXD68)F1-Ntg both 54.7594 8.7282 72.0871 37.4318
(B6.5XFAD x BXD75)F1-ADtg both 49.1025 9.6693 68.2985 29.9065
(B6.5XFAD x BXD77)F1-Ntg both 19.755 11.1651 41.9206 -2.4106
(B6.5XFAD x BXD87)F1-Ntg both 55.39 9.1163 73.4881 37.2919
(B6.5XFAD x D2)F1-ADtg both 46.2216 4.169 54.4981 37.9451
(B6.5XFAD x D2)F1-Ntg both 36.2027 5.188 46.5021 25.9032




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA