Phenotype measure:   Neuner1   cfc_14mo_shock4

ID, description, units MPD:65971   cfc_14mo_shock4   percentage of time spent freezing during 40 s interval post shock at 14 mo of age, day 1 contextual fear conditioning   [%]  4th shock
Data set, strains Neuner1   F1 AD-BXD   51 strains     sex: both     age: 55-57wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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Neuner1 - percentage of time spent freezing during 40 s interval post shock at 14 mo of age, day 1 contextual fear conditioning 4th shock



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested48 strains35 strains
Mean of the strain means33.002   % 37.81   %
Median of the strain means32.925   % 36.33   %
SD of the strain means± 18.977 ± 13.069
Coefficient of variation (CV)0.575 0.3456
Min–max range of strain means0.0   –   72.67   % 12.67   –   64.0   %
Mean sample size per strain4.5   mice 4.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 434.9643 434.9643 1.0809 0.2996
strain 25 41145.9628 1645.8385 4.0899 < 0.0001
sex:strain 25 15155.5687 606.2227 1.5064 0.0637
Residuals 222 89337.0504 402.4191


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x B6)F1-ADtg m 36.592 16.356   27 3.1478 0.447 2.67, 77.33 -0.09
(B6.5XFAD x B6)F1-Ntg f 36.262 18.338   9 6.1127 0.5057 16.0, 67.33 0.17
(B6.5XFAD x B6)F1-Ntg m 53.43 19.016   11 5.7334 0.3559 26.67, 81.33 1.2
(B6.5XFAD x BXD100)F1-ADtg f 13.025 7.9832   2   5.645 0.6129 7.38, 18.67 -1.05
(B6.5XFAD x BXD100)F1-ADtg m 16.009 9.8691   7 3.7302 0.6165 4.03, 28.67 -1.67
(B6.5XFAD x BXD100)F1-Ntg f 32.0 17.034   4 8.5169 0.5323 20.0, 56.67 -0.05
(B6.5XFAD x BXD100)F1-Ntg m 19.242 18.416   6 7.5183 0.9571 -1.42
(B6.5XFAD x BXD14)F1-ADtg f 2.015 2.8496   2   2.015 1.4142 -1.63
(B6.5XFAD x BXD14)F1-Ntg f 43.335 30.172   2   21.335 0.6963 22.0, 64.67 0.54
(B6.5XFAD x BXD16)F1-ADtg f 30.5 30.042   4 15.021 0.985 4.0, 73.33 -0.13
(B6.5XFAD x BXD22)F1-ADtg f 51.49 2.5951   2   1.835 0.0504 49.66, 53.33 0.97
(B6.5XFAD x BXD22)F1-Ntg f 27.0 3.2951   2   2.33 0.122 24.67, 29.33 -0.32
(B6.5XFAD x BXD32)F1-ADtg f 7.0 9.8995   2   7.0 1.4142 -1.37
(B6.5XFAD x BXD32)F1-ADtg m 34.223 7.315   3 4.2233 0.2137 30.0, 42.67 -0.27
(B6.5XFAD x BXD32)F1-Ntg f 23.183 14.322   3 8.2686 0.6178 6.67, 32.21 -0.52
(B6.5XFAD x BXD32)F1-Ntg m 50.0 34.889   2   24.67 0.6978 25.33, 74.67 0.93
(B6.5XFAD x BXD42)F1-ADtg f 34.67 36.77   2   26.0 1.0606 8.67, 60.67 0.09
(B6.5XFAD x BXD42)F1-Ntg f 9.33 0.0   1   0.0 0.0 9.33, 9.33 -1.25
(B6.5XFAD x BXD44)F1-ADtg f 33.518 19.136   13 5.3073 0.5709 12.67, 68.0 0.03
(B6.5XFAD x BXD44)F1-ADtg m 29.25 12.086   8 4.2731 0.4132 8.67, 48.0 -0.66
(B6.5XFAD x BXD44)F1-Ntg f 66.0 0.0   1   0.0 0.0 66.0, 66.0 1.74
(B6.5XFAD x BXD44)F1-Ntg m 43.363 29.978   3 17.308 0.6913 14.09, 74.0 0.42
(B6.5XFAD x BXD51)F1-ADtg f 45.573 31.566   6 12.887 0.6926 11.33, 94.0 0.66
(B6.5XFAD x BXD51)F1-Ntg f 38.782 29.742   4 14.871 0.7669 0.3
(B6.5XFAD x BXD55)F1-ADtg f 0.3325 0.665   4 0.3325 2.0 -1.72
(B6.5XFAD x BXD55)F1-Ntg f 9.045 7.1347   2   5.045 0.7888 4.0, 14.09 -1.26
(B6.5XFAD x BXD56)F1-ADtg m 58.0 0.0   1   0.0 0.0 58.0, 58.0 1.54
(B6.5XFAD x BXD56)F1-Ntg f 44.665 13.202   2   9.335 0.2956 35.33, 54.0 0.61
(B6.5XFAD x BXD56)F1-Ntg m 12.67 0.0   1   0.0 0.0 12.67, 12.67 -1.92
(B6.5XFAD x BXD60)F1-ADtg f 29.867 22.89   4 11.445 0.7664 -0.17
(B6.5XFAD x BXD60)F1-ADtg m 34.264 17.729   5 7.9286 0.5174 8.0, 57.33 -0.27
(B6.5XFAD x BXD60)F1-Ntg f 47.1 2.2705   3 1.3109 0.0482 45.33, 49.66 0.74
(B6.5XFAD x BXD61)F1-ADtg f 37.77 20.929   7 7.9103 0.5541 9.33, 60.67 0.25
(B6.5XFAD x BXD61)F1-ADtg m 63.11 12.099   3 6.9851 0.1917 52.0, 76.0 1.94
(B6.5XFAD x BXD61)F1-Ntg f 56.8 38.913   5 17.403 0.6851 10.67, 93.33 1.25
(B6.5XFAD x BXD61)F1-Ntg m 45.922 24.83   6 10.137 0.5407 3.33, 66.44 0.62
(B6.5XFAD x BXD62)F1-ADtg f 7.5567 10.859   3 6.2692 1.437 -1.34
(B6.5XFAD x BXD62)F1-ADtg m 29.335 0.94045   2   0.665 0.0321 28.67, 30.0 -0.65
(B6.5XFAD x BXD62)F1-Ntg f 68.89 11.93   3 6.8881 0.1732 58.67, 82.0 1.89
(B6.5XFAD x BXD62)F1-Ntg m 64.0 11.33   3 6.5414 0.177 52.67, 75.33 2.0
(B6.5XFAD x BXD65)F1-ADtg f 41.243 25.625   6 10.461 0.6213 0.43
(B6.5XFAD x BXD65)F1-ADtg m 36.33 7.0711   2   5.0 0.1946 31.33, 41.33 -0.11
(B6.5XFAD x BXD65)F1-Ntg f 51.16 25.103   8 8.8752 0.4907 18.79, 78.0 0.96
(B6.5XFAD x BXD65)F1-Ntg m 42.335 22.154   2   15.665 0.5233 26.67, 58.0 0.35
(B6.5XFAD x BXD66)F1-ADtg f 13.78 18.396   3 10.621 1.335 -1.01
(B6.5XFAD x BXD66)F1-ADtg m 40.836 9.3986   5 4.2032 0.2302 26.85, 53.33 0.23
(B6.5XFAD x BXD66)F1-Ntg f 64.67 0.0   1   0.0 0.0 64.67, 64.67 1.67
(B6.5XFAD x BXD66)F1-Ntg m 19.777 17.965   3 10.372 0.9084 4.0, 39.33 -1.38
(B6.5XFAD x BXD68)F1-ADtg f 31.433 24.367   3 14.068 0.7752 3.33, 46.67 -0.08
(B6.5XFAD x BXD68)F1-ADtg m 29.681 15.309   7 5.7864 0.5158 12.67, 52.67 -0.62
(B6.5XFAD x BXD68)F1-Ntg f 50.47 31.645   10 10.007 0.6271 0.92
(B6.5XFAD x BXD68)F1-Ntg m 31.0 43.841   2   31.0 1.4142 -0.52
(B6.5XFAD x BXD69)F1-ADtg f 18.888 14.582   6 5.9532 0.772 2.67, 40.27 -0.74
(B6.5XFAD x BXD69)F1-ADtg m 25.734 13.288   5 5.9427 0.5164 6.0, 38.67 -0.92
(B6.5XFAD x BXD69)F1-Ntg f 26.335 20.339   4 10.17 0.7723 4.67, 49.33 -0.35
(B6.5XFAD x BXD69)F1-Ntg m 34.925 18.937   6 7.7311 0.5422 -0.22
(B6.5XFAD x BXD70)F1-ADtg f 20.67 0.0   1   0.0 0.0 20.67, 20.67 -0.65
(B6.5XFAD x BXD70)F1-ADtg m 38.887 12.724   3 7.3464 0.3272 29.33, 53.33 0.08
(B6.5XFAD x BXD70)F1-Ntg f 63.11 23.487   3 13.56 0.3722 36.0, 77.33 1.59
(B6.5XFAD x BXD70)F1-Ntg m 45.465 8.2944   2   5.865 0.1824 39.6, 51.33 0.59
(B6.5XFAD x BXD75)F1-ADtg f 12.355 17.288   4 8.6442 1.3993 -1.09
(B6.5XFAD x BXD75)F1-ADtg m 30.832 25.317   4 12.659 0.8211 -0.53
(B6.5XFAD x BXD75)F1-Ntg f 32.332 23.032   6 9.4026 0.7124 6.0, 57.33 -0.04
(B6.5XFAD x BXD75)F1-Ntg m 56.67 0.0   1   0.0 0.0 56.67, 56.67 1.44
(B6.5XFAD x BXD77)F1-ADtg f 0.0 0.0   3 0.0 None -1.74
(B6.5XFAD x BXD77)F1-ADtg m 36.0 2.67   3 1.5415 0.0742 33.33, 38.67 -0.14
(B6.5XFAD x BXD77)F1-Ntg f 41.593 17.921   10 5.6671 0.4309 14.67, 75.33 0.45
(B6.5XFAD x BXD77)F1-Ntg m 21.112 15.064   6 6.1499 0.7135 6.67, 47.33 -1.28
(B6.5XFAD x BXD81)F1-ADtg f 14.912 8.7241   6 3.5616 0.5851 3.33, 25.33 -0.95
(B6.5XFAD x BXD81)F1-Ntg f 44.786 26.307   5 11.765 0.5874 18.67, 87.92 0.62
(B6.5XFAD x BXD87)F1-ADtg f 35.144 15.426   10 4.8783 0.4389 15.33, 58.67 0.11
(B6.5XFAD x BXD87)F1-ADtg m 44.668 24.009   4 12.004 0.5375 24.0, 72.67 0.52
(B6.5XFAD x BXD87)F1-Ntg f 25.11 22.331   3 12.893 0.8893 2.67, 47.33 -0.42
(B6.5XFAD x BXD87)F1-Ntg m 47.33 0.0   1   0.0 0.0 47.33, 47.33 0.73
(B6.5XFAD x BXD89)F1-ADtg m 22.67 0.0   1   0.0 0.0 22.67, 22.67 -1.16
(B6.5XFAD x BXD89)F1-Ntg f 23.335 33.001   2   23.335 1.4142 -0.51
(B6.5XFAD x BXD89)F1-Ntg m 51.66 0.47376   2   0.335 0.0092 51.33, 52.0 1.06
(B6.5XFAD x BXD99)F1-ADtg f 72.67 0.0   1   0.0 0.0 72.67, 72.67 2.09
(B6.5XFAD x BXD99)F1-Ntg f 42.0 0.0   1   0.0 0.0 42.0, 42.0 0.47
(B6.5XFAD x D2)F1-ADtg f 12.741 12.801   17 3.1047 1.0047 -1.07
(B6.5XFAD x D2)F1-ADtg m 35.26 17.109   8 6.049 0.4852 11.41, 62.67 -0.2
(B6.5XFAD x D2)F1-Ntg f 49.648 26.493   12 7.6478 0.5336 3.33, 74.67 0.88
(B6.5XFAD x D2)F1-Ntg m 42.782 36.146   4 18.073 0.8449 0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-Ntg f 36.2622 6.6868 49.4399 23.0845
(B6.5XFAD x B6)F1-Ntg m 53.4273 6.0484 65.347 41.5076
(B6.5XFAD x BXD100)F1-ADtg f 13.025 14.1848 40.9792 -14.9292
(B6.5XFAD x BXD100)F1-ADtg m 16.0086 7.5821 30.9507 1.0664
(B6.5XFAD x BXD100)F1-Ntg f 32.0 10.0302 51.7666 12.2334
(B6.5XFAD x BXD100)F1-Ntg m 19.2417 8.1896 35.381 3.1023
(B6.5XFAD x BXD32)F1-ADtg f 7.0 14.1848 34.9542 -20.9542
(B6.5XFAD x BXD32)F1-ADtg m 34.2233 11.5819 57.0478 11.3989
(B6.5XFAD x BXD32)F1-Ntg f 23.1833 11.5819 46.0078 0.3589
(B6.5XFAD x BXD32)F1-Ntg m 50.0 14.1848 77.9542 22.0458
(B6.5XFAD x BXD44)F1-ADtg f 33.5185 5.5638 44.483 22.5539
(B6.5XFAD x BXD44)F1-ADtg m 29.25 7.0924 43.2271 15.2729
(B6.5XFAD x BXD60)F1-ADtg f 29.8675 10.0302 49.6341 10.1009
(B6.5XFAD x BXD60)F1-ADtg m 34.264 8.9713 51.9438 16.5842
(B6.5XFAD x BXD61)F1-ADtg f 37.77 7.5821 52.7121 22.8279
(B6.5XFAD x BXD61)F1-ADtg m 63.11 11.5819 85.9345 40.2855
(B6.5XFAD x BXD61)F1-Ntg f 56.8 8.9713 74.4798 39.1202
(B6.5XFAD x BXD61)F1-Ntg m 45.9217 8.1896 62.061 29.7823
(B6.5XFAD x BXD62)F1-ADtg f 7.5567 11.5819 30.3811 -15.2678
(B6.5XFAD x BXD62)F1-ADtg m 29.335 14.1848 57.2892 1.3808
(B6.5XFAD x BXD62)F1-Ntg f 68.89 11.5819 91.7145 46.0655
(B6.5XFAD x BXD62)F1-Ntg m 64.0 11.5819 86.8245 41.1755
(B6.5XFAD x BXD65)F1-ADtg f 41.2433 8.1896 57.3827 25.104
(B6.5XFAD x BXD65)F1-ADtg m 36.33 14.1848 64.2842 8.3758
(B6.5XFAD x BXD65)F1-Ntg f 51.155 7.0924 65.1321 37.1779
(B6.5XFAD x BXD65)F1-Ntg m 42.335 14.1848 70.2892 14.3808
(B6.5XFAD x BXD66)F1-ADtg f 13.78 11.5819 36.6045 -9.0445
(B6.5XFAD x BXD66)F1-ADtg m 40.836 8.9713 58.5158 23.1562
(B6.5XFAD x BXD68)F1-ADtg f 31.4333 11.5819 54.2578 8.6089
(B6.5XFAD x BXD68)F1-ADtg m 29.6814 7.5821 44.6236 14.7393
(B6.5XFAD x BXD68)F1-Ntg f 50.466 6.3437 62.9675 37.9645
(B6.5XFAD x BXD68)F1-Ntg m 31.0 14.1848 58.9542 3.0458
(B6.5XFAD x BXD69)F1-ADtg f 18.8883 8.1896 35.0277 2.749
(B6.5XFAD x BXD69)F1-ADtg m 25.734 8.9713 43.4138 8.0542
(B6.5XFAD x BXD69)F1-Ntg f 26.335 10.0302 46.1016 6.5684
(B6.5XFAD x BXD69)F1-Ntg m 34.925 8.1896 51.0643 18.7857
(B6.5XFAD x BXD70)F1-Ntg f 63.11 11.5819 85.9345 40.2855
(B6.5XFAD x BXD70)F1-Ntg m 45.465 14.1848 73.4192 17.5108
(B6.5XFAD x BXD75)F1-ADtg f 12.355 10.0302 32.1216 -7.4116
(B6.5XFAD x BXD75)F1-ADtg m 30.8325 10.0302 50.5991 11.0659
(B6.5XFAD x BXD77)F1-ADtg f 0.0 11.5819 22.8245 -22.8245
(B6.5XFAD x BXD77)F1-ADtg m 36.0 11.5819 58.8245 13.1755
(B6.5XFAD x BXD77)F1-Ntg f 41.593 6.3437 54.0945 29.0915
(B6.5XFAD x BXD77)F1-Ntg m 21.1117 8.1896 37.251 4.9723
(B6.5XFAD x BXD87)F1-ADtg f 35.144 6.3437 47.6455 22.6425
(B6.5XFAD x BXD87)F1-ADtg m 44.6675 10.0302 64.4341 24.9009
(B6.5XFAD x BXD89)F1-Ntg f 23.335 14.1848 51.2892 -4.6192
(B6.5XFAD x BXD89)F1-Ntg m 51.665 14.1848 79.6192 23.7108
(B6.5XFAD x D2)F1-ADtg f 12.7406 4.8654 22.3288 3.1524
(B6.5XFAD x D2)F1-ADtg m 35.26 7.0924 49.2371 21.2829
(B6.5XFAD x D2)F1-Ntg f 49.6475 5.7909 61.0597 38.2353
(B6.5XFAD x D2)F1-Ntg m 42.7825 10.0302 62.5491 23.0159


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
(B6.5XFAD x B6)F1-Ntg both 44.8447 4.5082 53.7292 35.9603
(B6.5XFAD x BXD100)F1-ADtg both 14.5168 8.042 30.3653 -1.3317
(B6.5XFAD x BXD100)F1-Ntg both 25.6208 6.4745 38.3801 12.8616
(B6.5XFAD x BXD32)F1-ADtg both 20.6117 9.1563 38.656 2.5673
(B6.5XFAD x BXD32)F1-Ntg both 36.5917 9.1563 54.636 18.5473
(B6.5XFAD x BXD44)F1-ADtg both 31.3842 4.5072 40.2665 22.502
(B6.5XFAD x BXD60)F1-ADtg both 32.0657 6.7285 45.3256 18.8059
(B6.5XFAD x BXD61)F1-ADtg both 50.44 6.9215 64.0802 36.7998
(B6.5XFAD x BXD61)F1-Ntg both 51.3608 6.0736 63.3301 39.3916
(B6.5XFAD x BXD62)F1-ADtg both 18.4458 9.1563 36.4902 0.4015
(B6.5XFAD x BXD62)F1-Ntg both 66.445 8.1896 82.5843 50.3057
(B6.5XFAD x BXD65)F1-ADtg both 38.7867 8.1896 54.926 22.6473
(B6.5XFAD x BXD65)F1-Ntg both 46.745 7.9296 62.3719 31.1181
(B6.5XFAD x BXD66)F1-ADtg both 27.308 7.325 41.7435 12.8725
(B6.5XFAD x BXD68)F1-ADtg both 30.5574 6.9215 44.1976 16.9171
(B6.5XFAD x BXD68)F1-Ntg both 40.733 7.7694 56.0441 25.4219
(B6.5XFAD x BXD69)F1-ADtg both 22.3112 6.0736 34.2804 10.3419
(B6.5XFAD x BXD69)F1-Ntg both 30.63 6.4745 43.3893 17.8707
(B6.5XFAD x BXD70)F1-Ntg both 54.2875 9.1563 72.3318 36.2432
(B6.5XFAD x BXD75)F1-ADtg both 21.5937 7.0924 35.5708 7.6167
(B6.5XFAD x BXD77)F1-ADtg both 18.0 8.1896 34.1393 1.8607
(B6.5XFAD x BXD77)F1-Ntg both 31.3523 5.1796 41.5597 21.1449
(B6.5XFAD x BXD87)F1-ADtg both 39.9057 5.9339 51.5998 28.2117
(B6.5XFAD x BXD89)F1-Ntg both 37.5 10.0302 57.2666 17.7334
(B6.5XFAD x D2)F1-ADtg both 24.0003 4.3004 32.4751 15.5254
(B6.5XFAD x D2)F1-Ntg both 46.215 5.7909 57.6272 34.8028




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA