Project measure / variable:   Brinkmeyer1   clin_score_d8

ID, description, units MPD:64421   clin_score_d8   clinical score (0=normal, 6=moribund), post infection   [score]  day 8  
Theiler's murine encephalomyelitis virus study
Data set, strains Brinkmeyer1   CC   5 strains     sex: both     age: 4wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Brinkmeyer1 - clinical score (0=normal, 6=moribund), post infection day 8



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested5 strains4 strains
Mean of the strain means1.88   score 3.0312   score
Median of the strain means1.9   score 3.0   score
SD of the strain means± 1.1389 ± 0.76632
Coefficient of variation (CV)0.6058 0.2528
Min–max range of strain means0.5   –   3.0   score 2.125   –   4.0   score
Mean sample size per strain3.8   mice 3.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.123 0.123 0.1199 0.734
strain 1 4.6668 4.6668 4.5493 0.0499
sex:strain 1 0.0596 0.0596 0.0581 0.8129
Residuals 15 15.3875 1.0258


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC013/GeniUnc f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.77
CC013/GeniUnc m 3.0 0.0   4 0.0 0.0 3.0, 3.0 -0.04
CC016/GeniUnc f 0.5 0.70711   2   0.5 1.4142 -1.21
CC019/TauUnc f 3.0 1.3693   5 0.61237 0.4564 1.5, 5.0 0.98
CC019/TauUnc m 3.0 0.93541   5 0.41833 0.3118 2.0, 4.0 -0.04
CC041/TauUnc f 3.0 0.63246   6 0.2582 0.2108 2.0, 4.0 0.98
CC041/TauUnc m 4.0 0.0   1   0.0 0.0 4.0, 4.0 1.26
CC061/GeniUnc f 1.9 1.0247   5 0.45826 0.5393 1.0, 3.5 0.02
CC061/GeniUnc m 2.125 0.25   4 0.125 0.1176 2.0, 2.5 -1.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC019/TauUnc f 3.0 0.4529532721 3.9654470459 2.0345529541
CC019/TauUnc m 3.0 0.4529532721 3.9654470459 2.0345529541
CC061/GeniUnc f 1.9 0.4529532721 2.8654470459 0.9345529541
CC061/GeniUnc m 2.125 0.5064171535 3.2044026116 1.0455973884


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC019/TauUnc both 3.0 0.3202863302 3.682674153 2.317325847
CC061/GeniUnc both 2.0125 0.339714954 2.7365852844 1.2884147156




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA