Project measure / variable:   Bolivar2   act_shock_2

ID, description, units MPD:63903   act_shock_2   activity (beam breaks) during 2.5 min period of training on day 1   [n]  after 2nd shock  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 2.5 min period of training on day 1 after 2nd shock



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means53.52   n 59.85   n
Median of the strain means55.34   n 62.42   n
SD of the strain means± 15.997 ± 16.848
Coefficient of variation (CV)0.2989 0.2815
Min–max range of strain means29.644   –   74.4   n 26.978   –   83.6   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2877.8756 2877.8756 7.8721 0.0054
strain 7 58756.3178 8393.7597 22.9601 < 0.0001
sex:strain 7 9256.1333 1322.3048 3.617 0.001
Residuals 272 99437.7778 365.5801


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 29.644 12.459   18 2.9367 0.4203 15.6, 64.4 -1.49
129S1/SvImJ m 26.978 13.613   18 3.2085 0.5046 10.0, 71.6 -1.95
A/J f 52.09 16.614   18 3.9159 0.319 25.2, 73.6 -0.09
A/J m 47.067 22.328   18 5.2627 0.4744 16.0, 98.8 -0.76
BALB/cByJ f 74.4 21.536   18 5.076 0.2895 46.4, 112.8 1.3
BALB/cByJ m 83.6 20.016   18 4.7179 0.2394 39.2, 112.0 1.41
C3H/HeJ f 46.156 14.819   18 3.493 0.3211 24.0, 78.0 -0.46
C3H/HeJ m 63.27 23.122   18 5.45 0.3655 24.4, 105.6 0.2
C57BL/6J f 58.6 15.785   18 3.7206 0.2694 31.6, 81.6 0.32
C57BL/6J m 61.56 16.047   18 3.7823 0.2607 38.0, 88.8 0.1
CBA/J f 66.04 21.784   18 5.1345 0.3298 27.6, 106.0 0.78
CBA/J m 60.42 15.052   18 3.5478 0.2491 40.0, 91.2 0.03
DBA/2J f 34.356 12.854   18 3.0298 0.3742 12.8, 64.4 -1.2
DBA/2J m 63.89 27.765   18 6.5444 0.4346 19.6, 113.6 0.24
FVB/NJ f 66.91 23.412   18 5.5182 0.3499 30.8, 132.4 0.84
FVB/NJ m 72.0 20.578   18 4.8503 0.2858 35.6, 105.6 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 29.6444 4.5067 38.5168 20.7721
129S1/SvImJ m 26.9778 4.5067 35.8502 18.1054
A/J f 52.0889 4.5067 60.9613 43.2165
A/J m 47.0667 4.5067 55.939 38.1943
BALB/cByJ f 74.4 4.5067 83.2724 65.5276
BALB/cByJ m 83.6 4.5067 92.4724 74.7276
C3H/HeJ f 46.1556 4.5067 55.0279 37.2832
C3H/HeJ m 63.2667 4.5067 72.139 54.3943
C57BL/6J f 58.6 4.5067 67.4724 49.7276
C57BL/6J m 61.5556 4.5067 70.4279 52.6832
CBA/J f 66.0444 4.5067 74.9168 57.1721
CBA/J m 60.4222 4.5067 69.2946 51.5498
DBA/2J f 34.3556 4.5067 43.2279 25.4832
DBA/2J m 63.8889 4.5067 72.7613 55.0165
FVB/NJ f 66.9111 4.5067 75.7835 58.0387
FVB/NJ m 72.0 4.5067 80.8724 63.1276


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 28.3111 3.1867 34.5848 22.0374
A/J both 49.5778 3.1867 55.8515 43.3041
BALB/cByJ both 79.0 3.1867 85.2737 72.7263
C3H/HeJ both 54.7111 3.1867 60.9848 48.4374
C57BL/6J both 60.0778 3.1867 66.3515 53.8041
CBA/J both 63.2333 3.1867 69.507 56.9596
DBA/2J both 49.1222 3.1867 55.3959 42.8485
FVB/NJ both 69.4556 3.1867 75.7293 63.1818




  GWAS USING LINEAR MIXED MODELS