Phenotype measure:   Lesage1   CD4_neg_CD8_neg_of_tot

ID, description, units MPD:63521   CD4_neg_CD8_neg_of_tot   percentage of splenic lymphocytes that are CD4- CD8- T cells   [%]
Data set, strains Lesage1   CC w/par   65 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic lymphocytes that are CD4- CD8- T cells



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested46 strains65 strains
Mean of the strain means0.86885   % 1.0056   %
Median of the strain means0.7605   % 0.89433   %
SD of the strain means± 0.51823 ± 0.63951
Coefficient of variation (CV)0.5965 0.636
Min–max range of strain means0.0885   –   2.2567   % 0.132   –   4.06   %
Mean sample size per strain2.2   mice 2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0609 0.0609 2.3836 0.1314
strain 12 18.9917 1.5826 61.9559 < 0.0001
sex:strain 12 0.249 0.0207 0.8122 0.6365
Residuals 36 0.9196 0.0255


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.4035 0.00070711   2   0.0005 0.0018 0.403, 0.404 -0.9
129S1/SvImJ m 0.381 0.01556   2   0.011 0.0408 0.37, 0.392 -0.98
A/J f 0.224 0.03253   2   0.023 0.1452 0.201, 0.247 -1.24
A/J m 0.2805 0.05728   2   0.0405 0.2042 0.24, 0.321 -1.13
C57BL/6J f 0.63525 0.13127   4 0.06563 0.2066 0.447, 0.743 -0.45
C57BL/6J m 0.533 0.0   1   0.0 0.0 0.533, 0.533 -0.74
CAST/EiJ f 0.0885 0.00353553   2   0.0025 0.0399 0.086, 0.091 -1.51
CAST/EiJ m 0.132 0.00424264   2   0.003 0.0321 0.129, 0.135 -1.37
CC008/Geni m 0.94133 0.09059   3 0.0523 0.0962 0.837, 1.0 -0.1
CC010/Geni f 1.515 0.09192   2   0.065 0.0607 1.45, 1.58 1.25
CC010/Geni m 1.21 0.0   1   0.0 0.0 1.21, 1.21 0.32
CC012/Geni f 0.7885 0.1294   2   0.0915 0.1641 0.697, 0.88 -0.16
CC012/Geni m 0.765 0.14638   3 0.08451 0.1913 0.634, 0.923 -0.38
CC013/Geni m 1.4533 0.24132   3 0.13932 0.166 1.25, 1.72 0.7
CC016/Geni m 2.19 0.46228   3 0.2669 0.2111 1.87, 2.72 1.85
CC020/Geni f 0.692 0.0   1   0.0 0.0 0.692, 0.692 -0.34
CC020/Geni m 0.891 0.14566   2   0.103 0.1635 0.788, 0.994 -0.18
CC023/Geni m 1.71 0.13077   3 0.0755 0.0765 1.62, 1.86 1.1
CC024/Geni f 0.6305 0.13223   2   0.0935 0.2097 0.537, 0.724 -0.46
CC024/Geni m 1.07 0.0   1   0.0 0.0 1.07, 1.07 0.1
CC025/Geni f 0.30667 0.01563   3 0.00902466 0.051 0.29, 0.321 -1.08
CC026/Geni m 0.61667 0.18544   3 0.10706 0.3007 0.473, 0.826 -0.61
CC027/Geni f 1.5 0.0   1   0.0 0.0 1.5, 1.5 1.22
CC027/Geni m 1.48 0.22627   2   0.16 0.1529 1.32, 1.64 0.74
CC030/Geni f 1.38 0.15556   2   0.11 0.1127 1.27, 1.49 0.99
CC031/Geni f 2.07 0.0   1   0.0 0.0 2.07, 2.07 2.32
CC031/Geni m 1.845 0.00707107   2   0.005 0.0038 1.84, 1.85 1.31
CC032/Geni m 1.0237 0.13454   3 0.07768 0.1314 0.891, 1.16 0.03
CC033/Geni f 1.081 0.19878   3 0.11476 0.1839 0.953, 1.31 0.41
CC038/Geni f 0.3805 0.11526   2   0.0815 0.3029 0.299, 0.462 -0.94
CC038/Geni m 0.329 0.0   1   0.0 0.0 0.329, 0.329 -1.06
CC042/Geni m 1.0533 0.0611   3 0.03528 0.058 1.0, 1.12 0.07
CC043/Geni m 0.98467 0.30813   3 0.1779 0.3129 0.714, 1.32 -0.03
CC056/Geni f 0.763 0.0   1   0.0 0.0 0.763, 0.763 -0.2
CC056/Geni m 0.7795 0.13647   2   0.0965 0.1751 0.683, 0.876 -0.35
CC061/Geni m 1.0353 0.13381   3 0.07726 0.1292 0.916, 1.18 0.05
CIV2_FE f 0.80167 0.14894   3 0.08599 0.1858 0.644, 0.94 -0.13
DET3_GA m 0.52533 0.14694   3 0.08483 0.2797 0.368, 0.659 -0.75
DONNELL_HA f 0.716 0.13718   2   0.097 0.1916 0.619, 0.813 -0.29
DONNELL_HA m 0.87433 0.23703   3 0.13685 0.2711 0.647, 1.12 -0.21
FIV_AC m 0.854 0.10758   4 0.05379 0.126 0.773, 1.01 -0.24
FUF_HE f 0.65333 0.05599   3 0.03232 0.0857 0.589, 0.691 -0.42
GALASUPREME_CE m 0.86567 0.20343   3 0.11745 0.235 0.633, 1.01 -0.22
GIT_GC f 0.758 0.0   1   0.0 0.0 0.758, 0.758 -0.21
GIT_GC m 0.7705 0.01626   2   0.0115 0.0211 0.759, 0.782 -0.37
HAX2_EF f 2.2567 0.26577   3 0.15344 0.1178 1.95, 2.42 2.68
HAZ_FE f 1.19 0.0   1   0.0 0.0 1.19, 1.19 0.62
HAZ_FE m 1.0645 0.21991   2   0.1555 0.2066 0.909, 1.22 0.09
HIP_GA f 1.15 0.0   1   0.0 0.0 1.15, 1.15 0.54
HIP_GA m 1.545 0.09192   2   0.065 0.0595 1.48, 1.61 0.84
HOE_GC f 0.892 0.0   1   0.0 0.0 0.892, 0.892 0.04
HOE_GC m 0.6285 0.11667   2   0.0825 0.1856 0.546, 0.711 -0.59
JUD_EF m 1.5625 0.35864   4 0.17932 0.2295 1.21, 2.03 0.87
KAV_AF f 1.305 0.0495   2   0.035 0.0379 1.27, 1.34 0.84
KAV_AF m 1.17 0.0   1   0.0 0.0 1.17, 1.17 0.26
LAM_DC f 0.691 0.0   1   0.0 0.0 0.691, 0.691 -0.34
LAM_DC m 0.988 0.0   1   0.0 0.0 0.988, 0.988 -0.03
LAT_HD f 1.514 0.16592   5 0.0742 0.1096 1.3, 1.71 1.24
LAT_HD m 1.605 0.07778   2   0.055 0.0485 1.55, 1.66 0.94
LAX_FC m 1.085 0.09192   2   0.065 0.0847 1.02, 1.15 0.12
LEL_FH m 0.3885 0.15627   2   0.1105 0.4022 0.278, 0.499 -0.96
LIP_BG f 0.67325 0.13547   4 0.06773 0.2012 0.555, 0.841 -0.38
LIP_BG m 0.766 0.0   1   0.0 0.0 0.766, 0.766 -0.37
LIV_DA f 0.833 0.0   1   0.0 0.0 0.833, 0.833 -0.07
LIV_DA m 1.155 0.02121   2   0.015 0.0184 1.14, 1.17 0.23
LOD_AE f 0.816 0.0291   3 0.0168 0.0357 0.783, 0.838 -0.1
LOM_BG m 0.70733 0.07414   3 0.04281 0.1048 0.654, 0.792 -0.47
LOT_FC f 0.79467 0.09657   3 0.05576 0.1215 0.721, 0.904 -0.14
LOT_FC m 0.9545 0.12092   2   0.0855 0.1267 0.869, 1.04 -0.08
LOX_GF m 0.20967 0.04329   3 0.025 0.2065 0.178, 0.259 -1.24
LUF_AD m 1.54 0.52531   5 0.23493 0.3411 1.12, 2.4 0.84
LUG_EH m 0.42467 0.10083   3 0.05821 0.2374 0.342, 0.537 -0.91
LUS_AH f 0.419 0.03799   3 0.02193 0.0907 0.39, 0.462 -0.87
LUV_DG m 1.345 0.35651   4 0.17826 0.2651 1.02, 1.84 0.53
LUZ_FH f 0.453 0.0693   2   0.049 0.153 0.404, 0.502 -0.8
LUZ_FH m 0.881 0.0   1   0.0 0.0 0.881, 0.881 -0.19
MERCURI_HF m 0.68767 0.05661   3 0.03268 0.0823 0.642, 0.751 -0.5
NOD/ShiLtJ f 0.4385 0.03041   2   0.0215 0.0693 0.417, 0.46 -0.83
NOD/ShiLtJ m 0.489 0.10041   2   0.071 0.2053 0.418, 0.56 -0.81
NZO/HlLtJ f 0.2475 0.01485   2   0.0105 0.06 0.237, 0.258 -1.2
NZO/HlLtJ m 0.2265 0.03182   2   0.0225 0.1405 0.204, 0.249 -1.22
PAT_CD m 1.5133 0.08021   3 0.04631 0.053 1.43, 1.59 0.79
PEF_EC f 2.0733 0.34559   3 0.19953 0.1667 1.74, 2.43 2.32
PEF_EC m 1.83 0.34828   3 0.20108 0.1903 1.44, 2.11 1.29
POH_DC f 0.74833 0.11683   3 0.06745 0.1561 0.643, 0.874 -0.23
PWK/PhJ f 0.329 0.00282843   2   0.002 0.0086 0.327, 0.331 -1.04
PWK/PhJ m 0.4025 0.18031   2   0.1275 0.448 0.275, 0.53 -0.94
SEH_AH f 0.976 0.0   1   0.0 0.0 0.976, 0.976 0.21
SEH_AH m 1.03 0.0   1   0.0 0.0 1.03, 1.03 0.04
STUCKY_HF f 1.111 0.68068   3 0.39299 0.6127 0.353, 1.67 0.47
STUCKY_HF m 0.387 0.0   1   0.0 0.0 0.387, 0.387 -0.97
VIT_ED f 1.27 0.05196   3 0.03 0.0409 1.21, 1.3 0.77
VUX2_HF m 0.54467 0.24291   3 0.14024 0.446 0.383, 0.824 -0.72
WAD f 0.24167 0.02108   3 0.01217 0.0872 0.224, 0.265 -1.21
WSB/EiJ f 0.3905 0.00636396   2   0.0045 0.0163 0.386, 0.395 -0.92
WSB/EiJ m 0.571 0.08485   2   0.06 0.1486 0.511, 0.631 -0.68
XAD8_BG f 1.8 0.0   1   0.0 0.0 1.8, 1.8 1.8
XAD8_BG m 2.4133 0.50362   3 0.29077 0.2087 2.06, 2.99 2.2
XAH3_GH m 2.2933 0.24786   3 0.1431 0.1081 2.07, 2.56 2.01
XAS4_AF m 1.1923 0.22315   3 0.12884 0.1872 0.937, 1.35 0.29
XAV_AH m 1.0847 0.21323   3 0.12311 0.1966 0.944, 1.33 0.12
XAW2_CD m 0.646 0.08768   2   0.062 0.1357 0.584, 0.708 -0.56
XEB2_AG f 0.53667 0.12765   3 0.0737 0.2379 0.391, 0.629 -0.64
XEB2_AG m 0.366 0.06601   3 0.03811 0.1803 0.323, 0.442 -1.0
XEB_AF f 0.4895 0.05162   2   0.0365 0.1055 0.453, 0.526 -0.73
XEB_AF m 0.532 0.0   1   0.0 0.0 0.532, 0.532 -0.74
XEQ_EH m 0.89433 0.01305   3 0.0075351 0.0146 0.884, 0.909 -0.17
XXEN2_DC m 0.57333 0.03092   3 0.01785 0.0539 0.554, 0.609 -0.68
XXEN3_DC f 0.94 0.0   1   0.0 0.0 0.94, 0.94 0.14
XXEN3_DC m 1.01 0.0   1   0.0 0.0 1.01, 1.01 0.01
YOX_DE m 4.06 2.0594   3 1.189 0.5072 2.57, 6.41 4.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.4035 0.113 0.6327 0.1743
129S1/SvImJ m 0.381 0.113 0.6102 0.1518
A/J f 0.224 0.113 0.4532 -0.0052
A/J m 0.2805 0.113 0.5097 0.0513
CAST/EiJ f 0.0885 0.113 0.3177 -0.1407
CAST/EiJ m 0.132 0.113 0.3612 -0.0972
CC012/Geni f 0.7885 0.113 1.0177 0.5593
CC012/Geni m 0.765 0.0923 0.9521 0.5779
DONNELL_HA f 0.716 0.113 0.9452 0.4868
DONNELL_HA m 0.8743 0.0923 1.0615 0.6872
LAT_HD f 1.514 0.0715 1.659 1.369
LAT_HD m 1.605 0.113 1.8342 1.3758
LOT_FC f 0.7947 0.0923 0.9818 0.6075
LOT_FC m 0.9545 0.113 1.1837 0.7253
NOD/ShiLtJ f 0.4385 0.113 0.6677 0.2093
NOD/ShiLtJ m 0.489 0.113 0.7182 0.2598
NZO/HlLtJ f 0.2475 0.113 0.4767 0.0183
NZO/HlLtJ m 0.2265 0.113 0.4557 -0.0027
PEF_EC f 2.0733 0.0923 2.2605 1.8862
PEF_EC m 1.83 0.0923 2.0171 1.6429
PWK/PhJ f 0.329 0.113 0.5582 0.0998
PWK/PhJ m 0.4025 0.113 0.6317 0.1733
WSB/EiJ f 0.3905 0.113 0.6197 0.1613
WSB/EiJ m 0.571 0.113 0.8002 0.3418
XEB2_AG f 0.5367 0.0923 0.7238 0.3495
XEB2_AG m 0.366 0.0923 0.5531 0.1789


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.3922 0.0799 0.5543 0.2302
A/J both 0.2523 0.0799 0.4143 0.0902
CAST/EiJ both 0.1103 0.0799 0.2723 -0.0518
CC012/Geni both 0.7768 0.073 0.9247 0.6288
DONNELL_HA both 0.7952 0.073 0.9431 0.6472
LAT_HD both 1.5595 0.0669 1.6951 1.4239
LOT_FC both 0.8746 0.073 1.0225 0.7266
NOD/ShiLtJ both 0.4637 0.0799 0.6258 0.3017
NZO/HlLtJ both 0.237 0.0799 0.3991 0.0749
PEF_EC both 1.9517 0.0652 2.084 1.8193
PWK/PhJ both 0.3657 0.0799 0.5278 0.2037
WSB/EiJ both 0.4808 0.0799 0.6428 0.3187
XEB2_AG both 0.4513 0.0652 0.5837 0.319




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA