Project measure / variable:   Lesage1   CD4_neg_CD8_neg_of_Tcells

ID, description, units MPD:63520   CD4_neg_CD8_neg_of_Tcells   percentage of splenic T cells that are CD4- CD8-   [%]  
Data set, strains Lesage1   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic T cells that are CD4- CD8-



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested46 strains65 strains
Mean of the strain means4.5884   % 5.5508   %
Median of the strain means3.5525   % 4.3667   %
SD of the strain means± 3.0706 ± 4.2426
Coefficient of variation (CV)0.6692 0.7643
Min–max range of strain means1.039   –   13.533   % 0.84033   –   28.833   %
Mean sample size per strain2.2   mice 2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.799 3.799 2.6144 0.1146
strain 12 674.7139 56.2262 38.6939 < 0.0001
sex:strain 12 16.7934 1.3994 0.9631 0.4998
Residuals 36 52.3116 1.4531


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.73 0.48083   2   0.34 0.1761 2.39, 3.07 -0.61
129S1/SvImJ m 1.84 0.15556   2   0.11 0.0845 1.73, 1.95 -0.87
A/J f 2.04 0.29698   2   0.21 0.1456 1.83, 2.25 -0.83
A/J m 2.22 0.60811   2   0.43 0.2739 1.79, 2.65 -0.79
C57BL/6J f 4.01 1.371   4 0.68548 0.3419 2.86, 6.0 -0.19
C57BL/6J m 2.02 0.0   1   0.0 0.0 2.02, 2.02 -0.83
CAST/EiJ f 1.73 0.45255   2   0.32 0.2616 1.41, 2.05 -0.93
CAST/EiJ m 2.34 1.0748   2   0.76 0.4593 1.58, 3.1 -0.76
CC008/Geni m 6.1433 2.6629   3 1.5374 0.4335 3.13, 8.18 0.14
CC010/Geni f 3.515 0.06364   2   0.045 0.0181 3.47, 3.56 -0.35
CC010/Geni m 2.4 0.0   1   0.0 0.0 2.4, 2.4 -0.74
CC012/Geni f 7.46 0.05657   2   0.04 0.0076 7.42, 7.5 0.94
CC012/Geni m 9.22 2.9985   3 1.7312 0.3252 6.88, 12.6 0.86
CC013/Geni m 10.873 1.185   3 0.68414 0.109 9.92, 12.2 1.25
CC016/Geni m 8.1867 1.9172   3 1.1069 0.2342 7.04, 10.4 0.62
CC020/Geni f 3.16 0.0   1   0.0 0.0 3.16, 3.16 -0.47
CC020/Geni m 4.99 1.2021   2   0.85 0.2409 4.14, 5.84 -0.13
CC023/Geni m 12.833 0.80829   3 0.46667 0.063 12.1, 13.7 1.72
CC024/Geni f 3.13 0.25456   2   0.18 0.0813 2.95, 3.31 -0.47
CC024/Geni m 6.66 0.0   1   0.0 0.0 6.66, 6.66 0.26
CC025/Geni f 1.039 0.07983   3 0.04609 0.0768 0.947, 1.09 -1.16
CC026/Geni m 4.5767 1.72   3 0.99305 0.3758 3.25, 6.52 -0.23
CC027/Geni f 7.5 0.0   1   0.0 0.0 7.5, 7.5 0.95
CC027/Geni m 6.08 0.67882   2   0.48 0.1116 5.6, 6.56 0.12
CC030/Geni f 11.55 1.4849   2   1.05 0.1286 10.5, 12.6 2.27
CC031/Geni f 10.6 0.0   1   0.0 0.0 10.6, 10.6 1.96
CC031/Geni m 10.09 0.15556   2   0.11 0.0154 9.98, 10.2 1.07
CC032/Geni m 6.82 0.91411   3 0.52776 0.134 5.86, 7.68 0.3
CC033/Geni f 10.917 2.1922   3 1.2657 0.2008 9.25, 13.4 2.06
CC038/Geni f 3.22 1.0748   2   0.76 0.3338 2.46, 3.98 -0.45
CC038/Geni m 2.81 0.0   1   0.0 0.0 2.81, 2.81 -0.65
CC042/Geni m 6.3833 0.43132   3 0.24902 0.0676 6.02, 6.86 0.2
CC043/Geni m 3.94 0.95142   3 0.5493 0.2415 2.96, 4.86 -0.38
CC056/Geni f 2.6 0.0   1   0.0 0.0 2.6, 2.6 -0.65
CC056/Geni m 3.085 0.4879   2   0.345 0.1582 2.74, 3.43 -0.58
CC061/Geni m 4.3667 0.4389   3 0.2534 0.1005 3.86, 4.63 -0.28
CIV2_FE f 4.7867 0.60136   3 0.3472 0.1256 4.21, 5.41 0.06
DET3_GA m 2.17 0.52849   3 0.30512 0.2435 1.68, 2.73 -0.8
DONNELL_HA f 2.525 0.40305   2   0.285 0.1596 2.24, 2.81 -0.67
DONNELL_HA m 3.2 1.0667   3 0.61587 0.3334 2.1, 4.23 -0.55
FIV_AC m 2.27 0.26115   4 0.13058 0.115 1.9, 2.5 -0.77
FUF_HE f 2.7967 0.3635   3 0.20987 0.13 2.39, 3.09 -0.58
GALASUPREME_CE m 5.53 1.1277   3 0.65108 0.2039 4.45, 6.7 0.0
GIT_GC f 4.25 0.0   1   0.0 0.0 4.25, 4.25 -0.11
GIT_GC m 4.355 0.41719   2   0.295 0.0958 4.06, 4.65 -0.28
HAX2_EF f 13.533 1.3204   3 0.76231 0.0976 12.1, 14.7 2.91
HAZ_FE f 5.56 0.0   1   0.0 0.0 5.56, 5.56 0.32
HAZ_FE m 5.095 1.096   2   0.775 0.2151 4.32, 5.87 -0.11
HIP_GA f 3.67 0.0   1   0.0 0.0 3.67, 3.67 -0.3
HIP_GA m 4.705 0.62933   2   0.445 0.1338 4.26, 5.15 -0.2
HOE_GC f 5.2 0.0   1   0.0 0.0 5.2, 5.2 0.2
HOE_GC m 3.46 0.73539   2   0.52 0.2125 2.94, 3.98 -0.49
JUD_EF m 13.375 1.0436   4 0.52182 0.078 12.3, 14.5 1.84
KAV_AF f 6.595 0.71418   2   0.505 0.1083 6.09, 7.1 0.65
KAV_AF m 6.2 0.0   1   0.0 0.0 6.2, 6.2 0.15
LAM_DC f 2.87 0.0   1   0.0 0.0 2.87, 2.87 -0.56
LAM_DC m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.6
LAT_HD f 9.936 1.4008   5 0.62646 0.141 8.55, 11.8 1.74
LAT_HD m 8.005 0.60104   2   0.425 0.0751 7.58, 8.43 0.58
LAX_FC m 9.035 1.0677   2   0.755 0.1182 8.28, 9.79 0.82
LEL_FH m 2.55 0.62225   2   0.44 0.244 2.11, 2.99 -0.71
LIP_BG f 2.05 0.51153   4 0.25577 0.2495 1.54, 2.51 -0.83
LIP_BG m 2.42 0.0   1   0.0 0.0 2.42, 2.42 -0.74
LIV_DA f 2.47 0.0   1   0.0 0.0 2.47, 2.47 -0.69
LIV_DA m 4.15 0.09899   2   0.07 0.0239 4.08, 4.22 -0.33
LOD_AE f 3.59 0.08718   3 0.05033 0.0243 3.53, 3.69 -0.33
LOM_BG m 2.62 0.51118   3 0.29513 0.1951 2.31, 3.21 -0.69
LOT_FC f 4.7033 0.53407   3 0.30835 0.1136 4.39, 5.32 0.04
LOT_FC m 5.535 2.7789   2   1.965 0.5021 3.57, 7.5 0.0
LOX_GF m 0.84033 0.16623   3 0.09597 0.1978 0.692, 1.02 -1.11
LUF_AD m 8.044 3.1905   5 1.4269 0.3966 5.59, 13.5 0.59
LUG_EH m 3.8033 0.43143   3 0.24909 0.1134 3.31, 4.11 -0.41
LUS_AH f 4.1033 0.26577   3 0.15344 0.0648 3.85, 4.38 -0.16
LUV_DG m 6.1025 2.066   4 1.033 0.3386 4.0, 8.81 0.13
LUZ_FH f 1.84 0.02828   2   0.02 0.0154 1.82, 1.86 -0.9
LUZ_FH m 3.55 0.0   1   0.0 0.0 3.55, 3.55 -0.47
MERCURI_HF m 5.77 0.22113   3 0.12767 0.0383 5.52, 5.94 0.05
NOD/ShiLtJ f 1.615 0.40305   2   0.285 0.2496 1.33, 1.9 -0.97
NOD/ShiLtJ m 1.835 0.45962   2   0.325 0.2505 1.51, 2.16 -0.88
NZO/HlLtJ f 1.845 0.38891   2   0.275 0.2108 1.57, 2.12 -0.89
NZO/HlLtJ m 1.355 0.10607   2   0.075 0.0783 1.28, 1.43 -0.99
PAT_CD m 8.89 0.17692   3 0.10214 0.0199 8.7, 9.05 0.79
PEF_EC f 11.367 1.0017   3 0.57831 0.0881 10.4, 12.4 2.21
PEF_EC m 10.73 2.0164   3 1.1641 0.1879 8.49, 12.4 1.22
POH_DC f 4.2933 0.75295   3 0.43472 0.1754 3.8, 5.16 -0.1
PWK/PhJ f 2.745 0.20506   2   0.145 0.0747 2.6, 2.89 -0.6
PWK/PhJ m 3.145 0.51619   2   0.365 0.1641 2.78, 3.51 -0.57
SEH_AH f 2.61 0.0   1   0.0 0.0 2.61, 2.61 -0.64
SEH_AH m 3.51 0.0   1   0.0 0.0 3.51, 3.51 -0.48
STUCKY_HF f 6.1133 3.5437   3 2.0459 0.5797 2.48, 9.56 0.5
STUCKY_HF m 2.55 0.0   1   0.0 0.0 2.55, 2.55 -0.71
VIT_ED f 3.0467 0.21548   3 0.12441 0.0707 2.84, 3.27 -0.5
VUX2_HF m 2.9333 1.5678   3 0.90518 0.5345 1.93, 4.74 -0.62
WAD f 1.46 0.27074   3 0.15631 0.1854 1.27, 1.77 -1.02
WSB/EiJ f 1.91 0.12728   2   0.09 0.0666 1.82, 2.0 -0.87
WSB/EiJ m 2.515 0.8556   2   0.605 0.3402 1.91, 3.12 -0.72
XAD8_BG f 5.87 0.0   1   0.0 0.0 5.87, 5.87 0.42
XAD8_BG m 9.14 2.1695   3 1.2526 0.2374 7.5, 11.6 0.85
XAH3_GH m 14.433 2.4947   3 1.4403 0.1728 11.6, 16.3 2.09
XAS4_AF m 5.5867 1.1629   3 0.67142 0.2082 4.26, 6.43 0.01
XAV_AH m 7.47 1.3359   3 0.7713 0.1788 6.33, 8.94 0.45
XAW2_CD m 3.295 0.92631   2   0.655 0.2811 2.64, 3.95 -0.53
XEB2_AG f 4.57 0.62952   3 0.36346 0.1378 3.86, 5.06 -0.01
XEB2_AG m 2.9533 0.62788   3 0.36251 0.2126 2.5, 3.67 -0.61
XEB_AF f 3.01 0.67882   2   0.48 0.2255 2.53, 3.49 -0.51
XEB_AF m 3.07 0.0   1   0.0 0.0 3.07, 3.07 -0.58
XEQ_EH m 5.2867 0.40673   3 0.23483 0.0769 4.86, 5.67 -0.06
XXEN2_DC m 3.8067 0.1193   3 0.06888 0.0313 3.71, 3.94 -0.41
XXEN3_DC f 4.93 0.0   1   0.0 0.0 4.93, 4.93 0.11
XXEN3_DC m 5.8 0.0   1   0.0 0.0 5.8, 5.8 0.06
YOX_DE m 28.833 13.162   3 7.5992 0.4565 20.4, 44.0 5.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.73 0.8524 4.4587 1.0013
129S1/SvImJ m 1.84 0.8524 3.5687 0.1113
A/J f 2.04 0.8524 3.7687 0.3113
A/J m 2.22 0.8524 3.9487 0.4913
CAST/EiJ f 1.73 0.8524 3.4587 0.0013
CAST/EiJ m 2.34 0.8524 4.0687 0.6113
CC012/Geni f 7.46 0.8524 9.1887 5.7313
CC012/Geni m 9.22 0.696 10.6315 7.8085
DONNELL_HA f 2.525 0.8524 4.2537 0.7963
DONNELL_HA m 3.2 0.696 4.6115 1.7885
LAT_HD f 9.936 0.5391 11.0293 8.8427
LAT_HD m 8.005 0.8524 9.7337 6.2763
LOT_FC f 4.7033 0.696 6.1148 3.2919
LOT_FC m 5.535 0.8524 7.2637 3.8063
NOD/ShiLtJ f 1.615 0.8524 3.3437 -0.1137
NOD/ShiLtJ m 1.835 0.8524 3.5637 0.1063
NZO/HlLtJ f 1.845 0.8524 3.5737 0.1163
NZO/HlLtJ m 1.355 0.8524 3.0837 -0.3737
PEF_EC f 11.3667 0.696 12.7781 9.9552
PEF_EC m 10.73 0.696 12.1415 9.3185
PWK/PhJ f 2.745 0.8524 4.4737 1.0163
PWK/PhJ m 3.145 0.8524 4.8737 1.4163
WSB/EiJ f 1.91 0.8524 3.6387 0.1813
WSB/EiJ m 2.515 0.8524 4.2437 0.7863
XEB2_AG f 4.57 0.696 5.9815 3.1585
XEB2_AG m 2.9533 0.696 4.3648 1.5419


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.285 0.6027 3.5074 1.0626
A/J both 2.13 0.6027 3.3524 0.9076
CAST/EiJ both 2.035 0.6027 3.2574 0.8126
CC012/Geni both 8.34 0.5502 9.4559 7.2241
DONNELL_HA both 2.8625 0.5502 3.9784 1.7466
LAT_HD both 8.9705 0.5043 9.9932 7.9478
LOT_FC both 5.1192 0.5502 6.235 4.0033
NOD/ShiLtJ both 1.725 0.6027 2.9474 0.5026
NZO/HlLtJ both 1.6 0.6027 2.8224 0.3776
PEF_EC both 11.0483 0.4921 12.0464 10.0503
PWK/PhJ both 2.945 0.6027 4.1674 1.7226
WSB/EiJ both 2.2125 0.6027 3.4349 0.9901
XEB2_AG both 3.7617 0.4921 4.7597 2.7636




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA