Phenotype measure:   Lesage1   T_cells

ID, description, units MPD:63515   T_cells   percentage of splenic lymphocytes that are T cells   [%]
Data set, strains Lesage1   CC w/par   65 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic lymphocytes that are T cells



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested46 strains65 strains
Mean of the strain means20.66   % 19.992   %
Median of the strain means18.684   % 18.2   %
SD of the strain means± 8.5453 ± 7.4811
Coefficient of variation (CV)0.4136 0.3742
Min–max range of strain means5.335   –   43.05   % 6.28   –   50.4   %
Mean sample size per strain2.2   mice 2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 27.189 27.189 4.1527 0.049
strain 12 2268.748 189.0623 28.8765 < 0.0001
sex:strain 12 74.2807 6.1901 0.9454 0.5151
Residuals 36 235.7022 6.5473


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.0 2.687   2   1.9 0.1791 13.1, 16.9 -0.66
129S1/SvImJ m 20.75 2.6163   2   1.85 0.1261 18.9, 22.6 0.1
A/J f 11.0 0.0   2   0.0 0.0 11.0, 11.0 -1.13
A/J m 12.8 0.98995   2   0.7 0.0773 12.1, 13.5 -0.96
C57BL/6J f 16.425 3.1858   4 1.5929 0.194 12.4, 19.8 -0.5
C57BL/6J m 26.3 0.0   1   0.0 0.0 26.3, 26.3 0.84
CAST/EiJ f 5.335 1.5768   2   1.115 0.2956 4.22, 6.45 -1.79
CAST/EiJ m 6.28 2.687   2   1.9 0.4279 4.38, 8.18 -1.83
CC008/Geni m 17.667 7.9727   3 4.603 0.4513 12.1, 26.8 -0.31
CC010/Geni f 43.05 1.6263   2   1.15 0.0378 41.9, 44.2 2.62
CC010/Geni m 50.4 0.0   1   0.0 0.0 50.4, 50.4 4.06
CC012/Geni f 10.545 1.6334   2   1.155 0.1549 9.39, 11.7 -1.18
CC012/Geni m 8.5267 1.0234   3 0.59088 0.12 7.35, 9.21 -1.53
CC013/Geni m 13.3 0.75498   3 0.43589 0.0568 12.6, 14.1 -0.89
CC016/Geni m 26.833 0.87369   3 0.50442 0.0326 26.1, 27.8 0.91
CC020/Geni f 21.9 0.0   1   0.0 0.0 21.9, 21.9 0.15
CC020/Geni m 18.0 1.4142   2   1.0 0.0786 17.0, 19.0 -0.27
CC023/Geni m 13.4 1.7776   3 1.0263 0.1327 12.0, 15.4 -0.88
CC024/Geni f 20.05 2.6163   2   1.85 0.1305 18.2, 21.9 -0.07
CC024/Geni m 16.1 0.0   1   0.0 0.0 16.1, 16.1 -0.52
CC025/Geni f 29.567 1.0504   3 0.60645 0.0355 28.5, 30.6 1.04
CC026/Geni m 13.7 0.91652   3 0.52915 0.0669 12.7, 14.5 -0.84
CC027/Geni f 20.0 0.0   1   0.0 0.0 20.0, 20.0 -0.08
CC027/Geni m 24.3 0.98995   2   0.7 0.0407 23.6, 25.0 0.58
CC030/Geni f 11.95 0.21213   2   0.15 0.0178 11.8, 12.1 -1.02
CC031/Geni f 19.5 0.0   1   0.0 0.0 19.5, 19.5 -0.14
CC031/Geni m 18.35 0.21213   2   0.15 0.0116 18.2, 18.5 -0.22
CC032/Geni m 15.033 0.28868   3 0.16667 0.0192 14.7, 15.2 -0.66
CC033/Geni f 9.94 0.60233   3 0.34775 0.0606 9.42, 10.6 -1.25
CC038/Geni f 11.9 0.42426   2   0.3 0.0357 11.6, 12.2 -1.03
CC038/Geni m 11.7 0.0   1   0.0 0.0 11.7, 11.7 -1.11
CC042/Geni m 16.567 1.3503   3 0.7796 0.0815 15.2, 17.9 -0.46
CC043/Geni m 24.767 2.1779   3 1.2574 0.0879 23.0, 27.2 0.64
CC056/Geni f 29.3 0.0   1   0.0 0.0 29.3, 29.3 1.01
CC056/Geni m 25.2 0.42426   2   0.3 0.0168 24.9, 25.5 0.7
CC061/Geni m 23.7 1.9   3 1.097 0.0802 21.8, 25.6 0.5
CIV2_FE f 16.667 1.1846   3 0.68394 0.0711 15.3, 17.4 -0.47
DET3_GA m 24.067 2.1032   3 1.2143 0.0874 21.9, 26.1 0.54
DONNELL_HA f 28.25 0.91924   2   0.65 0.0325 27.6, 28.9 0.89
DONNELL_HA m 27.833 2.5736   3 1.4859 0.0925 26.2, 30.8 1.05
FIV_AC m 37.975 6.0917   4 3.0459 0.1604 31.8, 44.2 2.4
FUF_HE f 23.5 1.3748   3 0.79373 0.0585 22.0, 24.7 0.33
GALASUPREME_CE m 15.6 1.7059   3 0.98489 0.1094 14.2, 17.5 -0.59
GIT_GC f 17.8 0.0   1   0.0 0.0 17.8, 17.8 -0.33
GIT_GC m 17.75 1.3435   2   0.95 0.0757 16.8, 18.7 -0.3
HAX2_EF f 16.667 0.66583   3 0.38442 0.0399 16.1, 17.4 -0.47
HAZ_FE f 21.4 0.0   1   0.0 0.0 21.4, 21.4 0.09
HAZ_FE m 21.0 0.14142   2   0.1 0.0067 20.9, 21.1 0.13
HIP_GA f 31.3 0.0   1   0.0 0.0 31.3, 31.3 1.25
HIP_GA m 32.95 2.4749   2   1.75 0.0751 31.2, 34.7 1.73
HOE_GC f 17.2 0.0   1   0.0 0.0 17.2, 17.2 -0.4
HOE_GC m 18.2 0.42426   2   0.3 0.0233 17.9, 18.5 -0.24
JUD_EF m 11.602 1.8528   4 0.92638 0.1597 9.51, 14.0 -1.12
KAV_AF f 19.85 1.4849   2   1.05 0.0748 18.8, 20.9 -0.09
KAV_AF m 18.9 0.0   1   0.0 0.0 18.9, 18.9 -0.15
LAM_DC f 24.1 0.0   1   0.0 0.0 24.1, 24.1 0.4
LAM_DC m 32.9 0.0   1   0.0 0.0 32.9, 32.9 1.73
LAT_HD f 15.5 3.0232   5 1.352 0.195 12.0, 20.0 -0.6
LAT_HD m 20.1 0.56569   2   0.4 0.0281 19.7, 20.5 0.01
LAX_FC m 12.0 0.42426   2   0.3 0.0354 11.7, 12.3 -1.07
LEL_FH m 14.95 2.4749   2   1.75 0.1655 13.2, 16.7 -0.67
LIP_BG f 33.225 3.191   4 1.5955 0.096 29.3, 37.1 1.47
LIP_BG m 31.7 0.0   1   0.0 0.0 31.7, 31.7 1.56
LIV_DA f 33.7 0.0   1   0.0 0.0 33.7, 33.7 1.53
LIV_DA m 27.8 0.0   2   0.0 0.0 27.8, 27.8 1.04
LOD_AE f 22.733 1.3429   3 0.77531 0.0591 21.2, 23.7 0.24
LOM_BG m 27.3 2.2716   3 1.3115 0.0832 24.7, 28.9 0.98
LOT_FC f 16.9 0.45826   3 0.26458 0.0271 16.4, 17.3 -0.44
LOT_FC m 19.05 7.4246   2   5.25 0.3897 13.8, 24.3 -0.13
LOX_GF m 25.0 1.044   3 0.60277 0.0418 23.8, 25.7 0.67
LUF_AD m 19.38 1.0941   5 0.48929 0.0565 17.7, 20.5 -0.08
LUG_EH m 11.46 4.139   3 2.3897 0.3612 8.56, 16.2 -1.14
LUS_AH f 10.223 0.56801   3 0.32794 0.0556 9.57, 10.6 -1.22
LUV_DG m 22.55 2.2219   4 1.1109 0.0985 20.9, 25.6 0.34
LUZ_FH f 24.55 3.4648   2   2.45 0.1411 22.1, 27.0 0.46
LUZ_FH m 24.8 0.0   1   0.0 0.0 24.8, 24.8 0.64
MERCURI_HF m 11.9 0.81854   3 0.47258 0.0688 11.0, 12.6 -1.08
NOD/ShiLtJ f 27.85 5.0205   2   3.55 0.1803 24.3, 31.4 0.84
NOD/ShiLtJ m 26.8 1.2728   2   0.9 0.0475 25.9, 27.7 0.91
NZO/HlLtJ f 13.85 3.7477   2   2.65 0.2706 11.2, 16.5 -0.8
NZO/HlLtJ m 16.7 0.98995   2   0.7 0.0593 16.0, 17.4 -0.44
PAT_CD m 17.033 0.81445   3 0.47022 0.0478 16.1, 17.6 -0.4
PEF_EC f 18.267 2.8006   3 1.6169 0.1533 16.6, 21.5 -0.28
PEF_EC m 17.067 0.11547   3 0.06667 0.0068 17.0, 17.2 -0.39
POH_DC f 17.767 4.1681   3 2.4065 0.2346 14.1, 22.3 -0.34
PWK/PhJ f 12.0 0.98995   2   0.7 0.0825 11.3, 12.7 -1.01
PWK/PhJ m 12.51 3.6628   2   2.59 0.2928 9.92, 15.1 -1.0
SEH_AH f 37.4 0.0   1   0.0 0.0 37.4, 37.4 1.96
SEH_AH m 29.4 0.0   1   0.0 0.0 29.4, 29.4 1.26
STUCKY_HF f 17.467 3.3005   3 1.9055 0.189 14.2, 20.8 -0.37
STUCKY_HF m 15.2 0.0   1   0.0 0.0 15.2, 15.2 -0.64
VIT_ED f 41.733 1.7786   3 1.0269 0.0426 39.7, 43.0 2.47
VUX2_HF m 19.167 2.558   3 1.4769 0.1335 17.4, 22.1 -0.11
WAD f 16.7 1.4731   3 0.85049 0.0882 15.0, 17.6 -0.46
WSB/EiJ f 20.5 1.6971   2   1.2 0.0828 19.3, 21.7 -0.02
WSB/EiJ m 23.45 4.5962   2   3.25 0.196 20.2, 26.7 0.46
XAD8_BG f 30.6 0.0   1   0.0 0.0 30.6, 30.6 1.16
XAD8_BG m 26.533 0.77675   3 0.44845 0.0293 25.9, 27.4 0.87
XAH3_GH m 16.1 2.0952   3 1.2097 0.1301 13.8, 17.9 -0.52
XAS4_AF m 21.433 0.51316   3 0.29627 0.0239 21.0, 22.0 0.19
XAV_AH m 14.5 0.69282   3 0.4 0.0478 13.7, 14.9 -0.73
XAW2_CD m 20.0 2.9698   2   2.1 0.1485 17.9, 22.1 0.0
XEB2_AG f 11.6 1.3   3 0.75056 0.1121 10.1, 12.4 -1.06
XEB2_AG m 12.467 0.40415   3 0.23333 0.0324 12.1, 12.9 -1.01
XEB_AF f 16.5 1.9799   2   1.4 0.12 15.1, 17.9 -0.49
XEB_AF m 17.3 0.0   1   0.0 0.0 17.3, 17.3 -0.36
XEQ_EH m 17.0 1.5716   3 0.90738 0.0924 15.6, 18.7 -0.4
XXEN2_DC m 15.1 1.1533   3 0.66583 0.0764 14.2, 16.4 -0.65
XXEN3_DC f 19.1 0.0   1   0.0 0.0 19.1, 19.1 -0.18
XXEN3_DC m 17.4 0.0   1   0.0 0.0 17.4, 17.4 -0.35
YOX_DE m 13.9 1.1269   3 0.65064 0.0811 12.6, 14.6 -0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.0 1.8093 18.6695 11.3305
129S1/SvImJ m 20.75 1.8093 24.4195 17.0805
A/J f 11.0 1.8093 14.6695 7.3305
A/J m 12.8 1.8093 16.4695 9.1305
CAST/EiJ f 5.335 1.8093 9.0045 1.6655
CAST/EiJ m 6.28 1.8093 9.9495 2.6105
CC012/Geni f 10.545 1.8093 14.2145 6.8755
CC012/Geni m 8.5267 1.4773 11.5228 5.5306
DONNELL_HA f 28.25 1.8093 31.9195 24.5805
DONNELL_HA m 27.8333 1.4773 30.8294 24.8372
LAT_HD f 15.5 1.1443 17.8208 13.1792
LAT_HD m 20.1 1.8093 23.7695 16.4305
LOT_FC f 16.9 1.4773 19.8961 13.9039
LOT_FC m 19.05 1.8093 22.7195 15.3805
NOD/ShiLtJ f 27.85 1.8093 31.5195 24.1805
NOD/ShiLtJ m 26.8 1.8093 30.4695 23.1305
NZO/HlLtJ f 13.85 1.8093 17.5195 10.1805
NZO/HlLtJ m 16.7 1.8093 20.3695 13.0305
PEF_EC f 18.2667 1.4773 21.2628 15.2706
PEF_EC m 17.0667 1.4773 20.0628 14.0706
PWK/PhJ f 12.0 1.8093 15.6695 8.3305
PWK/PhJ m 12.51 1.8093 16.1795 8.8405
WSB/EiJ f 20.5 1.8093 24.1695 16.8305
WSB/EiJ m 23.45 1.8093 27.1195 19.7805
XEB2_AG f 11.6 1.4773 14.5961 8.6039
XEB2_AG m 12.4667 1.4773 15.4628 9.4706


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 17.875 1.2794 20.4697 15.2803
A/J both 11.9 1.2794 14.4947 9.3053
CAST/EiJ both 5.8075 1.2794 8.4022 3.2128
CC012/Geni both 9.5358 1.1679 11.9045 7.1672
DONNELL_HA both 28.0417 1.1679 30.4103 25.673
LAT_HD both 17.8 1.0704 19.9709 15.6291
LOT_FC both 17.975 1.1679 20.3436 15.6064
NOD/ShiLtJ both 27.325 1.2794 29.9197 24.7303
NZO/HlLtJ both 15.275 1.2794 17.8697 12.6803
PEF_EC both 17.6667 1.0446 19.7852 15.5481
PWK/PhJ both 12.255 1.2794 14.8497 9.6603
WSB/EiJ both 21.975 1.2794 24.5697 19.3803
XEB2_AG both 12.0333 1.0446 14.1519 9.9148




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA