Project measure / variable:   Lesage1   CD4_neg_CD8_neg_of_NKT

ID, description, units MPD:63513   CD4_neg_CD8_neg_of_NKT   percentage of splenic NK T cells that are CD4- CD8-   [%]  
Data set, strains Lesage1   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic NK T cells that are CD4- CD8-



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested46 strains65 strains
Mean of the strain means24.103   % 27.769   %
Median of the strain means19.175   % 25.9   %
SD of the strain means± 13.673 ± 14.781
Coefficient of variation (CV)0.5673 0.5323
Min–max range of strain means4.805   –   67.3   % 6.18   –   71.27   %
Mean sample size per strain2.2   mice 2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 263.71 263.71 46.6148 < 0.0001
strain 12 6903.8468 575.3206 101.6968 < 0.0001
sex:strain 12 203.2438 16.937 2.9939 0.0054
Residuals 36 203.6596 5.6572


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.925 0.53033   2   0.375 0.0534 9.55, 10.3 -1.04
129S1/SvImJ m 12.2 1.1314   2   0.8 0.0927 11.4, 13.0 -1.05
A/J f 4.805 0.3182   2   0.225 0.0662 4.58, 5.03 -1.41
A/J m 6.18 0.93338   2   0.66 0.151 5.52, 6.84 -1.46
C57BL/6J f 13.275 2.3358   4 1.1679 0.176 11.5, 16.7 -0.79
C57BL/6J m 16.7 0.0   1   0.0 0.0 16.7, 16.7 -0.75
CAST/EiJ f 16.25 2.4749   2   1.75 0.1523 14.5, 18.0 -0.57
CAST/EiJ m 19.8 4.3841   2   3.1 0.2214 16.7, 22.9 -0.54
CC008/Geni m 37.533 15.712   3 9.0713 0.4186 20.1, 50.6 0.66
CC010/Geni f 13.1 0.70711   2   0.5 0.054 12.6, 13.6 -0.8
CC010/Geni m 14.5 0.0   1   0.0 0.0 14.5, 14.5 -0.9
CC012/Geni f 17.1 2.1213   2   1.5 0.1241 15.6, 18.6 -0.51
CC012/Geni m 18.533 2.9838   3 1.7227 0.161 15.1, 20.5 -0.62
CC013/Geni m 9.9667 0.61101   3 0.35277 0.0613 9.3, 10.5 -1.2
CC016/Geni m 39.133 2.0502   3 1.1837 0.0524 37.1, 41.2 0.77
CC020/Geni f 21.4 0.0   1   0.0 0.0 21.4, 21.4 -0.2
CC020/Geni m 24.1 0.84853   2   0.6 0.0352 23.5, 24.7 -0.25
CC023/Geni m 29.0 2.3643   3 1.365 0.0815 27.3, 31.7 0.08
CC024/Geni f 34.85 0.21213   2   0.15 0.0061 34.7, 35.0 0.79
CC024/Geni m 44.0 0.0   1   0.0 0.0 44.0, 44.0 1.1
CC025/Geni f 22.8 1.8193   3 1.0504 0.0798 21.7, 24.9 -0.1
CC026/Geni m 26.5 0.72111   3 0.41633 0.0272 25.9, 27.3 -0.09
CC027/Geni f 35.5 0.0   1   0.0 0.0 35.5, 35.5 0.83
CC027/Geni m 39.75 1.3435   2   0.95 0.0338 38.8, 40.7 0.81
CC030/Geni f 18.45 0.77782   2   0.55 0.0422 17.9, 19.0 -0.41
CC031/Geni f 36.5 0.0   1   0.0 0.0 36.5, 36.5 0.91
CC031/Geni m 40.45 1.4849   2   1.05 0.0367 39.4, 41.5 0.86
CC032/Geni m 48.167 2.4583   3 1.4193 0.051 45.6, 50.5 1.38
CC033/Geni f 52.7 4.0286   3 2.3259 0.0764 49.8, 57.3 2.09
CC038/Geni f 33.25 4.7376   2   3.35 0.1425 29.9, 36.6 0.67
CC038/Geni m 25.9 0.0   1   0.0 0.0 25.9, 25.9 -0.13
CC042/Geni m 71.27 0.75719   3 0.43716 0.0106 70.4, 71.8 2.94
CC043/Geni m 11.297 3.0102   3 1.7379 0.2665 8.19, 14.2 -1.11
CC056/Geni f 32.3 0.0   1   0.0 0.0 32.3, 32.3 0.6
CC056/Geni m 29.4 0.84853   2   0.6 0.0289 28.8, 30.0 0.11
CC061/Geni m 35.667 1.4572   3 0.8413 0.0409 34.0, 36.7 0.53
CIV2_FE f 12.4 0.6245   3 0.36056 0.0504 11.9, 13.1 -0.86
DET3_GA m 26.567 1.097   3 0.63333 0.0413 25.7, 27.8 -0.08
DONNELL_HA f 46.35 0.07071   2   0.05 0.0015 46.3, 46.4 1.63
DONNELL_HA m 46.967 3.3171   3 1.9151 0.0706 44.1, 50.6 1.3
FIV_AC m 42.125 7.8296   4 3.9148 0.1859 31.6, 50.0 0.97
FUF_HE f 11.967 1.4189   3 0.81921 0.1186 10.7, 13.5 -0.89
GALASUPREME_CE m 29.833 1.7898   3 1.0333 0.06 28.3, 31.8 0.14
GIT_GC f 45.4 0.0   1   0.0 0.0 45.4, 45.4 1.56
GIT_GC m 43.4 1.4142   2   1.0 0.0326 42.4, 44.4 1.06
HAX2_EF f 12.067 0.81445   3 0.47022 0.0675 11.5, 13.0 -0.88
HAZ_FE f 25.4 0.0   1   0.0 0.0 25.4, 25.4 0.09
HAZ_FE m 20.5 6.2225   2   4.4 0.3035 16.1, 24.9 -0.49
HIP_GA f 17.3 0.0   1   0.0 0.0 17.3, 17.3 -0.5
HIP_GA m 21.6 0.70711   2   0.5 0.0327 21.1, 22.1 -0.42
HOE_GC f 25.3 0.0   1   0.0 0.0 25.3, 25.3 0.09
HOE_GC m 31.5 1.1314   2   0.8 0.0359 30.7, 32.3 0.25
JUD_EF m 15.35 0.88129   4 0.44064 0.0574 14.1, 16.1 -0.84
KAV_AF f 7.75 1.0889   2   0.77 0.1405 6.98, 8.52 -1.2
KAV_AF m 9.19 0.0   1   0.0 0.0 9.19, 9.19 -1.26
LAM_DC f 30.4 0.0   1   0.0 0.0 30.4, 30.4 0.46
LAM_DC m 30.4 0.0   1   0.0 0.0 30.4, 30.4 0.18
LAT_HD f 9.93 2.059   5 0.9208 0.2073 7.78, 13.3 -1.04
LAT_HD m 14.25 0.21213   2   0.15 0.0149 14.1, 14.4 -0.91
LAX_FC m 15.9 3.5355   2   2.5 0.2224 13.4, 18.4 -0.8
LEL_FH m 26.35 0.35355   2   0.25 0.0134 26.1, 26.6 -0.1
LIP_BG f 21.7 1.5727   4 0.78634 0.0725 20.1, 23.1 -0.18
LIP_BG m 26.9 0.0   1   0.0 0.0 26.9, 26.9 -0.06
LIV_DA f 21.3 0.0   1   0.0 0.0 21.3, 21.3 -0.2
LIV_DA m 23.1 1.5556   2   1.1 0.0673 22.0, 24.2 -0.32
LOD_AE f 18.433 1.3503   3 0.7796 0.0733 17.1, 19.8 -0.41
LOM_BG m 70.13 6.8157   3 3.935 0.0972 63.6, 77.2 2.87
LOT_FC f 14.633 2.7647   3 1.5962 0.1889 12.7, 17.8 -0.69
LOT_FC m 16.7 5.9397   2   4.2 0.3557 12.5, 20.9 -0.75
LOX_GF m 16.567 1.3051   3 0.75351 0.0788 15.1, 17.6 -0.76
LUF_AD m 23.64 7.7639   5 3.4721 0.3284 17.1, 35.1 -0.28
LUG_EH m 41.7 3.8588   3 2.2279 0.0925 38.0, 45.7 0.94
LUS_AH f 12.133 2.1008   3 1.2129 0.1731 10.0, 14.2 -0.88
LUV_DG m 16.95 5.4605   4 2.7302 0.3222 11.1, 21.8 -0.73
LUZ_FH f 15.65 1.4849   2   1.05 0.0949 14.6, 16.7 -0.62
LUZ_FH m 14.4 0.0   1   0.0 0.0 14.4, 14.4 -0.9
MERCURI_HF m 40.567 0.77675   3 0.44845 0.0191 39.7, 41.2 0.87
NOD/ShiLtJ f 17.6 0.98995   2   0.7 0.0562 16.9, 18.3 -0.48
NOD/ShiLtJ m 16.4 0.56569   2   0.4 0.0345 16.0, 16.8 -0.77
NZO/HlLtJ f 23.1 0.98995   2   0.7 0.0429 22.4, 23.8 -0.07
NZO/HlLtJ m 28.15 2.192   2   1.55 0.0779 26.6, 29.7 0.03
PAT_CD m 23.267 1.464   3 0.84525 0.0629 21.7, 24.6 -0.3
PEF_EC f 19.9 2.8618   3 1.6523 0.1438 17.2, 22.9 -0.31
PEF_EC m 30.8 1.8682   3 1.0786 0.0607 28.8, 32.5 0.21
POH_DC f 16.933 1.365   3 0.78811 0.0806 15.7, 18.4 -0.52
PWK/PhJ f 33.75 3.0406   2   2.15 0.0901 31.6, 35.9 0.71
PWK/PhJ m 37.55 2.4749   2   1.75 0.0659 35.8, 39.3 0.66
SEH_AH f 50.4 0.0   1   0.0 0.0 50.4, 50.4 1.92
SEH_AH m 54.2 0.0   1   0.0 0.0 54.2, 54.2 1.79
STUCKY_HF f 12.18 2.1131   3 1.22 0.1735 9.74, 13.4 -0.87
STUCKY_HF m 16.5 0.0   1   0.0 0.0 16.5, 16.5 -0.76
VIT_ED f 46.767 5.2729   3 3.0443 0.1127 41.8, 52.3 1.66
VUX2_HF m 20.533 0.70238   3 0.40552 0.0342 19.8, 21.2 -0.49
WAD f 35.967 2.7538   3 1.5899 0.0766 32.8, 37.8 0.87
WSB/EiJ f 14.35 2.0506   2   1.45 0.1429 12.9, 15.8 -0.71
WSB/EiJ m 13.2 0.28284   2   0.2 0.0214 13.0, 13.4 -0.99
XAD8_BG f 67.3 0.0   1   0.0 0.0 67.3, 67.3 3.16
XAD8_BG m 69.97 1.2055   3 0.69602 0.0172 68.7, 71.1 2.86
XAH3_GH m 26.533 1.222   3 0.70553 0.0461 25.2, 27.6 -0.08
XAS4_AF m 9.0667 0.27392   3 0.15815 0.0302 8.77, 9.31 -1.27
XAV_AH m 10.47 1.093   3 0.63106 0.1044 9.61, 11.7 -1.17
XAW2_CD m 42.55 7.0004   2   4.95 0.1645 37.6, 47.5 1.0
XEB2_AG f 15.867 2.318   3 1.3383 0.1461 13.4, 18.0 -0.6
XEB2_AG m 12.633 1.2342   3 0.71259 0.0977 11.6, 14.0 -1.02
XEB_AF f 27.9 2.4042   2   1.7 0.0862 26.2, 29.6 0.28
XEB_AF m 28.0 0.0   1   0.0 0.0 28.0, 28.0 0.02
XEQ_EH m 24.167 1.9296   3 1.1141 0.0798 22.0, 25.7 -0.24
XXEN2_DC m 21.533 1.4012   3 0.80898 0.0651 20.4, 23.1 -0.42
XXEN3_DC f 16.4 0.0   1   0.0 0.0 16.4, 16.4 -0.56
XXEN3_DC m 15.6 0.0   1   0.0 0.0 15.6, 15.6 -0.82
YOX_DE m 39.233 3.8175   3 2.204 0.0973 34.9, 42.1 0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.925 1.6818 13.3359 6.5141
129S1/SvImJ m 12.2 1.6818 15.6109 8.7891
A/J f 4.805 1.6818 8.2159 1.3941
A/J m 6.18 1.6818 9.5909 2.7691
CAST/EiJ f 16.25 1.6818 19.6609 12.8391
CAST/EiJ m 19.8 1.6818 23.2109 16.3891
CC012/Geni f 17.1 1.6818 20.5109 13.6891
CC012/Geni m 18.5333 1.3732 21.3184 15.7483
DONNELL_HA f 46.35 1.6818 49.7609 42.9391
DONNELL_HA m 46.9667 1.3732 49.7517 44.1816
LAT_HD f 9.93 1.0637 12.0873 7.7727
LAT_HD m 14.25 1.6818 17.6609 10.8391
LOT_FC f 14.6333 1.3732 17.4184 11.8483
LOT_FC m 16.7 1.6818 20.1109 13.2891
NOD/ShiLtJ f 17.6 1.6818 21.0109 14.1891
NOD/ShiLtJ m 16.4 1.6818 19.8109 12.9891
NZO/HlLtJ f 23.1 1.6818 26.5109 19.6891
NZO/HlLtJ m 28.15 1.6818 31.5609 24.7391
PEF_EC f 19.9 1.3732 22.685 17.115
PEF_EC m 30.8 1.3732 33.585 28.015
PWK/PhJ f 33.75 1.6818 37.1609 30.3391
PWK/PhJ m 37.55 1.6818 40.9609 34.1391
WSB/EiJ f 14.35 1.6818 17.7609 10.9391
WSB/EiJ m 13.2 1.6818 16.6109 9.7891
XEB2_AG f 15.8667 1.3732 18.6517 13.0816
XEB2_AG m 12.6333 1.3732 15.4184 9.8483


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.0625 1.1892 13.4744 8.6506
A/J both 5.4925 1.1892 7.9044 3.0806
CAST/EiJ both 18.025 1.1892 20.4369 15.6131
CC012/Geni both 17.8167 1.0856 20.0184 15.6149
DONNELL_HA both 46.6583 1.0856 48.8601 44.4566
LAT_HD both 12.09 0.995 14.1079 10.0721
LOT_FC both 15.6667 1.0856 17.8684 13.4649
NOD/ShiLtJ both 17.0 1.1892 19.4119 14.5881
NZO/HlLtJ both 25.625 1.1892 28.0369 23.2131
PEF_EC both 25.35 0.971 27.3193 23.3807
PWK/PhJ both 35.65 1.1892 38.0619 33.2381
WSB/EiJ both 13.775 1.1892 16.1869 11.3631
XEB2_AG both 14.25 0.971 16.2193 12.2807




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA