Phenotype measure:   Lesage1   CD27_neg_CD11b_pos

ID, description, units MPD:63507   CD27_neg_CD11b_pos   percentage of splenic NK cells that are CD27- CD11b+   [%]
Data set, strains Lesage1   CC w/par   64 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic NK cells that are CD27- CD11b+



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means17.368   % 17.314   %
Median of the strain means12.9   % 13.15   %
SD of the strain means± 12.315 ± 12.576
Coefficient of variation (CV)0.7091 0.7263
Min–max range of strain means3.8867   –   57.2   % 2.3567   –   56.7   %
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 63.7385 63.7385 2.8901 0.0978
strain 11 10266.1489 933.2863 42.318 < 0.0001
sex:strain 11 270.7021 24.6093 1.1159 0.3778
Residuals 36 793.9477 22.0541


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 20.1 2.2627   2   1.6 0.1126 18.5, 21.7 0.22
129S1/SvImJ m 25.05 6.0104   2   4.25 0.2399 20.8, 29.3 0.62
A/J f 27.3 2.687   2   1.9 0.0984 25.4, 29.2 0.81
A/J m 20.4 3.1113   2   2.2 0.1525 18.2, 22.6 0.25
C57BL/6J f 48.65 2.7598   4 1.3799 0.0567 46.0, 51.8 2.54
C57BL/6J m 40.1 0.0   1   0.0 0.0 40.1, 40.1 1.81
CAST/EiJ f 11.75 1.6263   2   1.15 0.1384 10.6, 12.9 -0.46
CAST/EiJ m 10.11 0.97581   2   0.69 0.0965 9.42, 10.8 -0.57
CC008/Geni m 13.1 1.6971   2   1.2 0.1295 11.9, 14.3 -0.34
CC010/Geni f 32.4 2.8284   2   2.0 0.0873 30.4, 34.4 1.22
CC010/Geni m 18.1 0.0   1   0.0 0.0 18.1, 18.1 0.06
CC012/Geni f 14.7 4.078   3 2.3544 0.2774 10.0, 17.3 -0.22
CC012/Geni m 8.064 1.2931   5 0.57828 0.1604 6.64, 9.29 -0.74
CC013/Geni m 34.833 6.701   3 3.8688 0.1924 28.2, 41.6 1.39
CC016/Geni m 38.633 5.1984   3 3.0013 0.1346 34.6, 44.5 1.7
CC020/Geni f 5.9 0.0   1   0.0 0.0 5.9, 5.9 -0.93
CC020/Geni m 6.215 0.28991   2   0.205 0.0466 6.01, 6.42 -0.88
CC023/Geni m 4.0367 0.17616   3 0.10171 0.0436 3.93, 4.24 -1.06
CC024/Geni f 11.65 0.6364   2   0.45 0.0546 11.2, 12.1 -0.46
CC024/Geni m 4.93 0.0   1   0.0 0.0 4.93, 4.93 -0.98
CC025/Geni f 29.8 2.8355   3 1.6371 0.0952 27.6, 33.0 1.01
CC026/Geni m 25.633 0.50332   3 0.29059 0.0196 25.1, 26.1 0.66
CC027/Geni f 25.8 0.0   1   0.0 0.0 25.8, 25.8 0.68
CC027/Geni m 27.15 9.4045   2   6.65 0.3464 20.5, 33.8 0.78
CC030/Geni f 12.05 0.21213   2   0.15 0.0176 11.9, 12.2 -0.43
CC031/Geni f 26.3 0.0   1   0.0 0.0 26.3, 26.3 0.73
CC031/Geni m 28.25 0.77782   2   0.55 0.0275 27.7, 28.8 0.87
CC032/Geni m 16.267 1.7243   3 0.99555 0.106 14.4, 17.8 -0.08
CC033/Geni f 4.6633 2.0274   3 1.1705 0.4347 2.46, 6.45 -1.03
CC038/Geni f 8.28 1.4142   2   1.0 0.1708 7.28, 9.28 -0.74
CC038/Geni m 5.76 0.0   1   0.0 0.0 5.76, 5.76 -0.92
CC042/Geni m 11.123 2.2313   3 1.2882 0.2006 9.27, 13.6 -0.49
CC043/Geni m 8.9867 1.2787   3 0.73825 0.1423 7.91, 10.4 -0.66
CC056/Geni f 9.91 0.0   1   0.0 0.0 9.91, 9.91 -0.61
CC056/Geni m 13.4 0.84853   2   0.6 0.0633 12.8, 14.0 -0.31
CC061/Geni m 8.6967 1.1944   3 0.68957 0.1373 7.41, 9.77 -0.69
CIV2_FE f 8.6067 2.4479   3 1.4133 0.2844 5.8, 10.3 -0.71
DET3_GA m 43.8 1.852   3 1.0693 0.0423 42.4, 45.9 2.11
DONNELL_HA f 27.45 17.466   2   12.35 0.6363 15.1, 39.8 0.82
DONNELL_HA m 22.467 9.1084   3 5.2587 0.4054 16.1, 32.9 0.41
FIV_AC m 5.0 3.311   4 1.6555 0.6622 2.01, 8.33 -0.98
FUF_HE f 18.133 2.3116   3 1.3346 0.1275 15.7, 20.3 0.06
GALASUPREME_CE m 6.22 1.7682   3 1.0209 0.2843 4.64, 8.13 -0.88
GIT_GC f 45.5 0.0   1   0.0 0.0 45.5, 45.5 2.28
GIT_GC m 41.95 2.8991   2   2.05 0.0691 39.9, 44.0 1.96
HAX2_EF f 20.867 3.7448   3 2.162 0.1795 17.5, 24.9 0.28
HAZ_FE f 12.9 0.0   1   0.0 0.0 12.9, 12.9 -0.36
HAZ_FE m 11.25 0.6364   2   0.45 0.0566 10.8, 11.7 -0.48
HIP_GA f 4.94 0.0   1   0.0 0.0 4.94, 4.94 -1.01
HIP_GA m 5.23 0.69296   2   0.49 0.1325 4.74, 5.72 -0.96
HOE_GC f 9.47 0.0   1   0.0 0.0 9.47, 9.47 -0.64
HOE_GC m 15.1 2.9698   2   2.1 0.1967 13.0, 17.2 -0.18
JUD_EF m 8.0575 3.4088   4 1.7044 0.4231 5.17, 12.3 -0.74
KAV_AF f 10.65 2.0506   2   1.45 0.1925 9.2, 12.1 -0.55
KAV_AF m 8.28 0.0   1   0.0 0.0 8.28, 8.28 -0.72
LAM_DC f 9.74 0.0   1   0.0 0.0 9.74, 9.74 -0.62
LAM_DC m 11.5 1.1314   2   0.8 0.0984 10.7, 12.3 -0.46
LAT_HD f 5.8102 4.8984   5 2.1906 0.8431 0.901, 12.4 -0.94
LAT_HD m 3.235 0.14849   2   0.105 0.0459 3.13, 3.34 -1.12
LAX_FC f 5.92 0.0   1   0.0 0.0 5.92, 5.92 -0.93
LAX_FC m 5.58 0.0   1   0.0 0.0 5.58, 5.58 -0.93
LEL_FH m 15.0 1.6971   2   1.2 0.1131 13.8, 16.2 -0.18
LIP_BG f 12.58 4.2439   4 2.122 0.3374 8.22, 18.2 -0.39
LIP_BG m 6.74 0.0   1   0.0 0.0 6.74, 6.74 -0.84
LIV_DA f 11.1 0.0   1   0.0 0.0 11.1, 11.1 -0.51
LIV_DA m 11.72 3.2244   2   2.28 0.2751 9.44, 14.0 -0.44
LOD_AE f 30.7 7.6864   3 4.4377 0.2504 21.9, 36.1 1.08
LOM_BG m 24.9 8.6626   3 5.0013 0.3479 16.9, 34.1 0.6
LOT_FC f 16.11 6.496   6 2.652 0.4032 8.56, 26.5 -0.1
LOX_GF m 44.8 4.0596   3 2.3438 0.0906 40.4, 48.4 2.19
LUF_AD m 38.48 9.1767   5 4.1039 0.2385 26.1, 46.9 1.68
LUG_EH m 24.3 0.78102   3 0.45092 0.0321 23.8, 25.2 0.56
LUS_AH f 9.3767 0.28572   3 0.16496 0.0305 9.08, 9.65 -0.65
LUV_DG m 13.2 2.1602   4 1.0801 0.1637 10.2, 15.2 -0.33
LUZ_FH f 20.375 2.9937   4 1.4969 0.1469 16.4, 23.1 0.24
LUZ_FH m 17.8 0.0   1   0.0 0.0 17.8, 17.8 0.04
MERCURI_HF m 12.333 1.9088   3 1.102 0.1548 10.9, 14.5 -0.4
NOD/ShiLtJ f 21.05 0.91924   2   0.65 0.0437 20.4, 21.7 0.3
NOD/ShiLtJ m 13.4 0.70711   2   0.5 0.0528 12.9, 13.9 -0.31
NZO/HlLtJ f 57.2 0.98995   2   0.7 0.0173 56.5, 57.9 3.23
NZO/HlLtJ m 56.7 3.9598   2   2.8 0.0698 53.9, 59.5 3.13
PAT_CD m 23.367 0.95044   3 0.54874 0.0407 22.4, 24.3 0.48
PEF_EC f 3.8867 0.76002   3 0.4388 0.1955 3.04, 4.51 -1.09
PEF_EC m 2.37 0.28213   3 0.16289 0.119 2.11, 2.67 -1.19
POH_DC f 12.867 3.3307   3 1.923 0.2589 10.2, 16.6 -0.37
PWK/PhJ f 12.95 3.3234   2   2.35 0.2566 10.6, 15.3 -0.36
PWK/PhJ m 10.29 2.984   2   2.11 0.29 8.18, 12.4 -0.56
SEH_AH f 8.89 0.0   1   0.0 0.0 8.89, 8.89 -0.69
SEH_AH m 4.225 0.75178   4 0.37589 0.1779 3.32, 5.16 -1.04
STUCKY_HF f 9.87 0.59908   3 0.34588 0.0607 9.22, 10.4 -0.61
STUCKY_HF m 9.82 0.0   1   0.0 0.0 9.82, 9.82 -0.6
VIT_ED f 12.923 6.3895   3 3.689 0.4944 7.17, 19.8 -0.36
VUX2_HF m 23.833 8.3644   3 4.8292 0.351 17.9, 33.4 0.52
WAD f 4.47 0.6149   3 0.35501 0.1376 4.11, 5.18 -1.05
WSB/EiJ f 20.85 1.0607   2   0.75 0.0509 20.1, 21.6 0.28
WSB/EiJ m 26.75 7.1418   2   5.05 0.267 21.7, 31.8 0.75
XAD8_BG f 13.7 0.0   1   0.0 0.0 13.7, 13.7 -0.3
XAD8_BG m 10.913 2.7277   3 1.5749 0.2499 7.94, 13.3 -0.51
XAH3_GH m 9.8367 2.0764   3 1.1988 0.2111 8.02, 12.1 -0.59
XAS4_AF m 15.333 2.3714   3 1.3691 0.1547 12.8, 17.5 -0.16
XAV_AH m 2.3567 0.57726   3 0.33328 0.2449 1.86, 2.99 -1.19
XAW2_CD m 21.45 0.49497   2   0.35 0.0231 21.1, 21.8 0.33
XEB2_AG f 14.4 3.9686   3 2.2913 0.2756 11.4, 18.9 -0.24
XEB2_AG m 5.59 1.0923   3 0.63066 0.1954 4.77, 6.83 -0.93
XEB_AF f 43.85 6.4347   2   4.55 0.1467 39.3, 48.4 2.15
XEB_AF m 44.0 0.0   1   0.0 0.0 44.0, 44.0 2.12
XEQ_EH m 20.367 1.3503   3 0.7796 0.0663 19.0, 21.7 0.24
XXEN2_DC m 21.3 1.852   3 1.0693 0.0869 19.2, 22.7 0.32
XXEN3_DC f 9.89 0.0   1   0.0 0.0 9.89, 9.89 -0.61
XXEN3_DC m 9.74 0.0   1   0.0 0.0 9.74, 9.74 -0.6
YOX_DE m 10.677 1.4716   3 0.84963 0.1378 9.43, 12.3 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 20.1 3.3207 26.8347 13.3653
129S1/SvImJ m 25.05 3.3207 31.7847 18.3153
A/J f 27.3 3.3207 34.0347 20.5653
A/J m 20.4 3.3207 27.1347 13.6653
CAST/EiJ f 11.75 3.3207 18.4847 5.0153
CAST/EiJ m 10.11 3.3207 16.8447 3.3753
CC012/Geni f 14.7 2.7113 20.1989 9.2011
CC012/Geni m 8.064 2.1002 12.3234 3.8046
DONNELL_HA f 27.45 3.3207 34.1847 20.7153
DONNELL_HA m 22.4667 2.7113 27.9655 16.9678
LAT_HD f 5.8102 2.1002 10.0696 1.5508
LAT_HD m 3.235 3.3207 9.9697 -3.4997
NOD/ShiLtJ f 21.05 3.3207 27.7847 14.3153
NOD/ShiLtJ m 13.4 3.3207 20.1347 6.6653
NZO/HlLtJ f 57.2 3.3207 63.9347 50.4653
NZO/HlLtJ m 56.7 3.3207 63.4347 49.9653
PEF_EC f 3.8867 2.7113 9.3855 -1.6122
PEF_EC m 2.37 2.7113 7.8689 -3.1289
PWK/PhJ f 12.95 3.3207 19.6847 6.2153
PWK/PhJ m 10.29 3.3207 17.0247 3.5553
WSB/EiJ f 20.85 3.3207 27.5847 14.1153
WSB/EiJ m 26.75 3.3207 33.4847 20.0153
XEB2_AG f 14.4 2.7113 19.8989 8.9011
XEB2_AG m 5.59 2.7113 11.0889 0.0911


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 22.575 2.3481 27.3371 17.8129
A/J both 23.85 2.3481 28.6121 19.0879
CAST/EiJ both 10.93 2.3481 15.6921 6.1679
CC012/Geni both 11.382 1.7148 14.8598 7.9042
DONNELL_HA both 24.9583 2.1435 29.3056 20.6111
LAT_HD both 4.5226 1.9646 8.5069 0.5383
NOD/ShiLtJ both 17.225 2.3481 21.9871 12.4629
NZO/HlLtJ both 56.95 2.3481 61.7121 52.1879
PEF_EC both 3.1283 1.9172 7.0166 -0.7599
PWK/PhJ both 11.62 2.3481 16.3821 6.8579
WSB/EiJ both 23.8 2.3481 28.5621 19.0379
XEB2_AG both 9.995 1.9172 13.8833 6.1067




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA