Phenotype measure:   Lesage1   CD27_pos_CD11b_neg

ID, description, units MPD:63505   CD27_pos_CD11b_neg   percentage of splenic NK cells that are CD27+ CD11b-   [%]
Data set, strains Lesage1   CC w/par   64 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic NK cells that are CD27+ CD11b-



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means40.644   % 39.567   %
Median of the strain means40.8   % 38.8   %
SD of the strain means± 14.545 ± 15.1
Coefficient of variation (CV)0.3579 0.3816
Min–max range of strain means11.25   –   69.5   % 9.82   –   68.4   %
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 81.9937 81.9937 3.3764 0.0744
strain 11 9693.2272 881.2025 36.287 < 0.0001
sex:strain 11 217.9227 19.8112 0.8158 0.6248
Residuals 36 874.2318 24.2842


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 34.45 3.182   2   2.25 0.0924 32.2, 36.7 -0.43
129S1/SvImJ m 30.55 3.4648   2   2.45 0.1134 28.1, 33.0 -0.6
A/J f 34.3 6.6468   2   4.7 0.1938 29.6, 39.0 -0.44
A/J m 40.9 4.2426   2   3.0 0.1037 37.9, 43.9 0.09
C57BL/6J f 17.525 3.5037   4 1.7518 0.1999 13.6, 21.0 -1.59
C57BL/6J m 19.4 0.0   1   0.0 0.0 19.4, 19.4 -1.34
CAST/EiJ f 28.85 4.1719   2   2.95 0.1446 25.9, 31.8 -0.81
CAST/EiJ m 36.75 0.6364   2   0.45 0.0173 36.3, 37.2 -0.19
CC008/Geni m 30.35 2.0506   2   1.45 0.0676 28.9, 31.8 -0.61
CC010/Geni f 25.35 0.35355   2   0.25 0.0139 25.1, 25.6 -1.05
CC010/Geni m 40.5 0.0   1   0.0 0.0 40.5, 40.5 0.06
CC012/Geni f 42.8 1.7692   3 1.0214 0.0413 41.2, 44.7 0.15
CC012/Geni m 47.06 4.6763   5 2.0913 0.0994 39.2, 50.8 0.5
CC013/Geni m 19.067 3.6856   3 2.1279 0.1933 14.9, 21.9 -1.36
CC016/Geni m 17.467 2.0526   3 1.1851 0.1175 15.2, 19.2 -1.46
CC020/Geni f 55.4 0.0   1   0.0 0.0 55.4, 55.4 1.01
CC020/Geni m 49.85 0.49497   2   0.35 0.0099 49.5, 50.2 0.68
CC023/Geni m 56.27 2.0207   3 1.1667 0.0359 54.1, 58.1 1.11
CC024/Geni f 52.6 2.5456   2   1.8 0.0484 50.8, 54.4 0.82
CC024/Geni m 65.4 0.0   1   0.0 0.0 65.4, 65.4 1.71
CC025/Geni f 29.4 2.5515   3 1.4731 0.0868 27.5, 32.3 -0.77
CC026/Geni m 30.2 0.78102   3 0.45092 0.0259 29.3, 30.7 -0.62
CC027/Geni f 37.4 0.0   1   0.0 0.0 37.4, 37.4 -0.22
CC027/Geni m 40.0 7.2125   2   5.1 0.1803 34.9, 45.1 0.03
CC030/Geni f 29.15 1.4849   2   1.05 0.0509 28.1, 30.2 -0.79
CC031/Geni f 38.8 0.0   1   0.0 0.0 38.8, 38.8 -0.13
CC031/Geni m 35.35 0.91924   2   0.65 0.026 34.7, 36.0 -0.28
CC032/Geni m 37.4 3.3045   3 1.9079 0.0884 34.2, 40.8 -0.14
CC033/Geni f 69.37 4.4377   3 2.5621 0.064 65.3, 74.1 1.97
CC038/Geni f 58.55 2.6163   2   1.85 0.0447 56.7, 60.4 1.23
CC038/Geni m 62.5 0.0   1   0.0 0.0 62.5, 62.5 1.52
CC042/Geni m 36.333 4.4602   3 2.5751 0.1228 33.0, 41.4 -0.21
CC043/Geni m 51.77 3.3531   3 1.9359 0.0648 48.5, 55.2 0.81
CC056/Geni f 45.4 0.0   1   0.0 0.0 45.4, 45.4 0.33
CC056/Geni m 38.65 3.0406   2   2.15 0.0787 36.5, 40.8 -0.06
CC061/Geni m 42.833 1.4012   3 0.80898 0.0327 41.7, 44.4 0.22
CIV2_FE f 50.3 2.0664   3 1.193 0.0411 48.0, 52.0 0.66
DET3_GA m 15.767 1.2503   3 0.72188 0.0793 14.5, 17.0 -1.58
DONNELL_HA f 26.15 12.799   2   9.05 0.4894 17.1, 35.2 -1.0
DONNELL_HA m 28.8 5.2202   3 3.0139 0.1813 22.8, 32.3 -0.71
FIV_AC m 65.55 1.5546   4 0.77728 0.0237 63.3, 66.8 1.72
FUF_HE f 16.067 1.4742   3 0.85114 0.0918 14.4, 17.2 -1.69
GALASUPREME_CE m 53.03 5.1228   3 2.9577 0.0966 47.2, 56.8 0.89
GIT_GC f 17.1 0.0   1   0.0 0.0 17.1, 17.1 -1.62
GIT_GC m 16.75 0.21213   2   0.15 0.0127 16.6, 16.9 -1.51
HAX2_EF f 39.667 5.0302   3 2.9042 0.1268 34.2, 44.1 -0.07
HAZ_FE f 41.9 0.0   1   0.0 0.0 41.9, 41.9 0.09
HAZ_FE m 32.25 4.4548   2   3.15 0.1381 29.1, 35.4 -0.48
HIP_GA f 60.7 0.0   1   0.0 0.0 60.7, 60.7 1.38
HIP_GA m 64.0 2.8284   2   2.0 0.0442 62.0, 66.0 1.62
HOE_GC f 40.8 0.0   1   0.0 0.0 40.8, 40.8 0.01
HOE_GC m 43.5 5.0912   2   3.6 0.117 39.9, 47.1 0.26
JUD_EF m 60.4 7.0033   4 3.5017 0.1159 54.1, 67.0 1.38
KAV_AF f 23.0 7.3539   2   5.2 0.3197 17.8, 28.2 -1.21
KAV_AF m 24.6 0.0   1   0.0 0.0 24.6, 24.6 -0.99
LAM_DC f 36.9 0.0   1   0.0 0.0 36.9, 36.9 -0.26
LAM_DC m 38.95 6.2933   2   4.45 0.1616 34.5, 43.4 -0.04
LAT_HD f 41.8 7.5283   5 3.3667 0.1801 30.4, 49.8 0.08
LAT_HD m 50.95 3.6062   2   2.55 0.0708 48.4, 53.5 0.75
LAX_FC f 69.5 0.0   1   0.0 0.0 69.5, 69.5 1.98
LAX_FC m 68.4 0.0   1   0.0 0.0 68.4, 68.4 1.91
LEL_FH m 43.1 2.1213   2   1.5 0.0492 41.6, 44.6 0.23
LIP_BG f 49.3 10.366   4 5.1828 0.2103 38.7, 61.6 0.6
LIP_BG m 61.4 0.0   1   0.0 0.0 61.4, 61.4 1.45
LIV_DA f 43.3 0.0   1   0.0 0.0 43.3, 43.3 0.18
LIV_DA m 35.05 1.7678   2   1.25 0.0504 33.8, 36.3 -0.3
LOD_AE f 37.167 6.5363   3 3.7737 0.1759 33.0, 44.7 -0.24
LOM_BG m 35.1 10.237   3 5.9102 0.2916 24.4, 44.8 -0.3
LOT_FC f 29.25 4.8669   6 1.9869 0.1664 22.5, 35.6 -0.78
LOX_GF m 11.467 0.11547   3 0.06667 0.0101 11.4, 11.6 -1.86
LUF_AD m 17.72 6.8181   5 3.0492 0.3848 12.2, 26.6 -1.45
LUG_EH m 19.967 0.85049   3 0.49103 0.0426 19.1, 20.8 -1.3
LUS_AH f 36.9 1.2767   3 0.73711 0.0346 35.5, 38.0 -0.26
LUV_DG m 50.85 3.7723   4 1.8861 0.0742 46.6, 55.3 0.75
LUZ_FH f 36.5 11.48   4 5.7398 0.3145 22.1, 45.9 -0.28
LUZ_FH m 45.3 0.0   1   0.0 0.0 45.3, 45.3 0.38
MERCURI_HF m 43.533 0.66583   3 0.38442 0.0153 42.8, 44.1 0.26
NOD/ShiLtJ f 33.05 1.3435   2   0.95 0.0407 32.1, 34.0 -0.52
NOD/ShiLtJ m 38.3 0.56569   2   0.4 0.0148 37.9, 38.7 -0.08
NZO/HlLtJ f 11.25 0.49497   2   0.35 0.044 10.9, 11.6 -2.02
NZO/HlLtJ m 9.82 1.6688   2   1.18 0.1699 8.64, 11.0 -1.97
PAT_CD m 30.167 1.4224   3 0.82125 0.0472 29.2, 31.8 -0.62
PEF_EC f 66.53 1.4189   3 0.81921 0.0213 65.0, 67.8 1.78
PEF_EC m 65.67 5.2367   3 3.0234 0.0797 59.7, 69.5 1.73
POH_DC f 52.3 4.5211   3 2.6102 0.0864 47.3, 56.1 0.8
PWK/PhJ f 48.4 1.4142   2   1.0 0.0292 47.4, 49.4 0.53
PWK/PhJ m 51.35 3.182   2   2.25 0.062 49.1, 53.6 0.78
SEH_AH f 55.1 0.0   1   0.0 0.0 55.1, 55.1 0.99
SEH_AH m 66.62 3.9255   4 1.9627 0.0589 63.3, 71.9 1.79
STUCKY_HF f 52.03 1.8502   3 1.0682 0.0356 49.9, 53.2 0.78
STUCKY_HF m 50.8 0.0   1   0.0 0.0 50.8, 50.8 0.74
VIT_ED f 58.0 10.75   3 6.2067 0.1854 47.2, 68.7 1.19
VUX2_HF m 29.167 3.213   3 1.855 0.1102 25.8, 32.2 -0.69
WAD f 62.03 2.3288   3 1.3445 0.0375 60.4, 64.7 1.47
WSB/EiJ f 41.05 0.6364   2   0.45 0.0155 40.6, 41.5 0.03
WSB/EiJ m 38.65 7.566   2   5.35 0.1958 33.3, 44.0 -0.06
XAD8_BG f 35.8 0.0   1   0.0 0.0 35.8, 35.8 -0.33
XAD8_BG m 33.533 1.5308   3 0.8838 0.0456 31.8, 34.7 -0.4
XAH3_GH m 46.433 3.453   3 1.9936 0.0744 42.6, 49.3 0.45
XAS4_AF m 23.267 1.464   3 0.84525 0.0629 21.7, 24.6 -1.08
XAV_AH m 50.63 0.49329   3 0.2848 0.0097 50.3, 51.2 0.73
XAW2_CD m 34.45 0.77782   2   0.55 0.0226 33.9, 35.0 -0.34
XEB2_AG f 41.5 6.4156   3 3.7041 0.1546 34.5, 47.1 0.06
XEB2_AG m 44.467 1.4572   3 0.8413 0.0328 42.8, 45.5 0.32
XEB_AF f 13.5 0.14142   2   0.1 0.0105 13.4, 13.6 -1.87
XEB_AF m 19.7 0.0   1   0.0 0.0 19.7, 19.7 -1.32
XEQ_EH m 19.367 1.3796   3 0.79652 0.0712 17.8, 20.4 -1.34
XXEN2_DC m 31.567 2.8676   3 1.6556 0.0908 28.9, 34.6 -0.53
XXEN3_DC f 44.1 0.0   1   0.0 0.0 44.1, 44.1 0.24
XXEN3_DC m 45.0 0.0   1   0.0 0.0 45.0, 45.0 0.36
YOX_DE m 48.267 2.3288   3 1.3445 0.0482 45.6, 49.9 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 34.45 3.4846 41.517 27.383
129S1/SvImJ m 30.55 3.4846 37.617 23.483
A/J f 34.3 3.4846 41.367 27.233
A/J m 40.9 3.4846 47.967 33.833
CAST/EiJ f 28.85 3.4846 35.917 21.783
CAST/EiJ m 36.75 3.4846 43.817 29.683
CC012/Geni f 42.8 2.8451 48.5702 37.0298
CC012/Geni m 47.06 2.2038 51.5296 42.5904
DONNELL_HA f 26.15 3.4846 33.217 19.083
DONNELL_HA m 28.8 2.8451 34.5702 23.0298
LAT_HD f 41.8 2.2038 46.2696 37.3304
LAT_HD m 50.95 3.4846 58.017 43.883
NOD/ShiLtJ f 33.05 3.4846 40.117 25.983
NOD/ShiLtJ m 38.3 3.4846 45.367 31.233
NZO/HlLtJ f 11.25 3.4846 18.317 4.183
NZO/HlLtJ m 9.82 3.4846 16.887 2.753
PEF_EC f 66.5333 2.8451 72.3035 60.7632
PEF_EC m 65.6667 2.8451 71.4368 59.8965
PWK/PhJ f 48.4 3.4846 55.467 41.333
PWK/PhJ m 51.35 3.4846 58.417 44.283
WSB/EiJ f 41.05 3.4846 48.117 33.983
WSB/EiJ m 38.65 3.4846 45.717 31.583
XEB2_AG f 41.5 2.8451 47.2702 35.7298
XEB2_AG m 44.4667 2.8451 50.2368 38.6965


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 32.5 2.464 37.4971 27.5029
A/J both 37.6 2.464 42.5971 32.6029
CAST/EiJ both 32.8 2.464 37.7971 27.8029
CC012/Geni both 44.93 1.7994 48.5794 41.2806
DONNELL_HA both 27.475 2.2493 32.0367 22.9133
LAT_HD both 46.375 2.0615 50.5559 42.1941
NOD/ShiLtJ both 35.675 2.464 40.6721 30.6779
NZO/HlLtJ both 10.535 2.464 15.5321 5.5379
PEF_EC both 66.1 2.0118 70.1801 62.0199
PWK/PhJ both 49.875 2.464 54.8721 44.8779
WSB/EiJ both 39.85 2.464 44.8471 34.8529
XEB2_AG both 42.9833 2.0118 47.0635 38.9032




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA