Phenotype measure:   Lesage1   CD27_neg_CD11b_neg

ID, description, units MPD:63504   CD27_neg_CD11b_neg   percentage of splenic NK cells that are CD27- CD11b-   [%]
Data set, strains Lesage1   CC w/par   64 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic NK cells that are CD27- CD11b-



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means28.004   % 29.076   %
Median of the strain means27.0   % 27.867   %
SD of the strain means± 12.852 ± 13.301
Coefficient of variation (CV)0.4589 0.4574
Min–max range of strain means5.3425   –   64.75   % 5.51   –   66.2   %
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4318 0.4318 0.0092 0.9241
strain 11 10647.4243 967.9477 20.6101 < 0.0001
sex:strain 11 202.4861 18.4078 0.392 0.9505
Residuals 36 1690.7272 46.9646


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 20.7 2.687   2   1.9 0.1298 18.8, 22.6 -0.57
129S1/SvImJ m 19.65 4.0305   2   2.85 0.2051 16.8, 22.5 -0.71
A/J f 17.7 1.1314   2   0.8 0.0639 16.9, 18.5 -0.8
A/J m 14.3 0.28284   2   0.2 0.0198 14.1, 14.5 -1.11
C57BL/6J f 5.3425 1.7111   4 0.85553 0.3203 3.48, 6.96 -1.76
C57BL/6J m 5.51 0.0   1   0.0 0.0 5.51, 5.51 -1.77
CAST/EiJ f 7.905 0.67175   2   0.475 0.085 7.43, 8.38 -1.56
CAST/EiJ m 6.985 1.393   2   0.985 0.1994 6.0, 7.97 -1.66
CC008/Geni m 54.35 0.21213   2   0.15 0.0039 54.2, 54.5 1.9
CC010/Geni f 12.19 4.3982   2   3.11 0.3608 9.08, 15.3 -1.23
CC010/Geni m 15.0 0.0   1   0.0 0.0 15.0, 15.0 -1.06
CC012/Geni f 27.0 11.262   3 6.5023 0.4171 14.0, 33.8 -0.08
CC012/Geni m 29.84 16.071   5 7.187 0.5386 12.2, 47.7 0.06
CC013/Geni m 33.867 2.8746   3 1.6597 0.0849 30.8, 36.5 0.36
CC016/Geni m 31.567 6.6463   3 3.8372 0.2105 23.9, 35.7 0.19
CC020/Geni f 29.5 0.0   1   0.0 0.0 29.5, 29.5 0.12
CC020/Geni m 31.7 2.2627   2   1.6 0.0714 30.1, 33.3 0.2
CC023/Geni m 18.7 4.1581   3 2.4007 0.2224 14.2, 22.4 -0.78
CC024/Geni f 28.5 2.9698   2   2.1 0.1042 26.4, 30.6 0.04
CC024/Geni m 25.6 0.0   1   0.0 0.0 25.6, 25.6 -0.26
CC025/Geni f 16.6 1.9975   3 1.1533 0.1203 14.9, 18.8 -0.89
CC026/Geni m 35.4 0.65574   3 0.37859 0.0185 34.8, 36.1 0.48
CC027/Geni f 34.3 0.0   1   0.0 0.0 34.3, 34.3 0.49
CC027/Geni m 28.85 2.4749   2   1.75 0.0858 27.1, 30.6 -0.02
CC030/Geni f 52.35 4.1719   2   2.95 0.0797 49.4, 55.3 1.89
CC031/Geni f 13.9 0.0   1   0.0 0.0 13.9, 13.9 -1.1
CC031/Geni m 14.9 1.1314   2   0.8 0.0759 14.1, 15.7 -1.07
CC032/Geni m 41.5 2.9597   3 1.7088 0.0713 39.5, 44.9 0.93
CC033/Geni f 21.2 2.2271   3 1.2858 0.1051 18.8, 23.2 -0.53
CC038/Geni f 26.6 1.1314   2   0.8 0.0425 25.8, 27.4 -0.11
CC038/Geni m 25.2 0.0   1   0.0 0.0 25.2, 25.2 -0.29
CC042/Geni m 45.7 3.2787   3 1.893 0.0717 42.2, 48.7 1.25
CC043/Geni m 20.667 0.28868   3 0.16667 0.014 20.5, 21.0 -0.63
CC056/Geni f 41.4 0.0   1   0.0 0.0 41.4, 41.4 1.04
CC056/Geni m 45.05 2.6163   2   1.85 0.0581 43.2, 46.9 1.2
CC061/Geni m 44.0 1.1358   3 0.65574 0.0258 43.2, 45.3 1.12
CIV2_FE f 23.167 2.1548   3 1.2441 0.093 21.5, 25.6 -0.38
DET3_GA m 17.4 2.3302   3 1.3454 0.1339 15.5, 20.0 -0.88
DONNELL_HA f 41.25 6.2933   2   4.45 0.1526 36.8, 45.7 1.03
DONNELL_HA m 44.867 5.3482   3 3.0878 0.1192 38.8, 48.9 1.19
FIV_AC m 21.025 8.0068   4 4.0034 0.3808 13.6, 28.0 -0.61
FUF_HE f 27.833 1.5373   3 0.88757 0.0552 26.8, 29.6 -0.01
GALASUPREME_CE m 33.767 2.0404   3 1.178 0.0604 32.0, 36.0 0.35
GIT_GC f 33.9 0.0   1   0.0 0.0 33.9, 33.9 0.46
GIT_GC m 37.3 1.9799   2   1.4 0.0531 35.9, 38.7 0.62
HAX2_EF f 23.167 2.7062   3 1.5624 0.1168 20.2, 25.5 -0.38
HAZ_FE f 35.6 0.0   1   0.0 0.0 35.6, 35.6 0.59
HAZ_FE m 47.3 6.2225   2   4.4 0.1316 42.9, 51.7 1.37
HIP_GA f 25.4 0.0   1   0.0 0.0 25.4, 25.4 -0.2
HIP_GA m 18.2 2.5456   2   1.8 0.1399 16.4, 20.0 -0.82
HOE_GC f 29.4 0.0   1   0.0 0.0 29.4, 29.4 0.11
HOE_GC m 24.4 0.42426   2   0.3 0.0174 24.1, 24.7 -0.35
JUD_EF m 24.85 4.2938   4 2.1469 0.1728 20.6, 29.8 -0.32
KAV_AF f 64.75 6.0104   2   4.25 0.0928 60.5, 69.0 2.86
KAV_AF m 66.2 0.0   1   0.0 0.0 66.2, 66.2 2.79
LAM_DC f 40.4 0.0   1   0.0 0.0 40.4, 40.4 0.96
LAM_DC m 35.15 11.526   2   8.15 0.3279 27.0, 43.3 0.46
LAT_HD f 45.42 5.6584   5 2.5305 0.1246 35.8, 50.3 1.36
LAT_HD m 41.65 3.0406   2   2.15 0.073 39.5, 43.8 0.95
LAX_FC f 14.2 0.0   1   0.0 0.0 14.2, 14.2 -1.07
LAX_FC m 17.6 0.0   1   0.0 0.0 17.6, 17.6 -0.86
LEL_FH m 26.8 1.1314   2   0.8 0.0422 26.0, 27.6 -0.17
LIP_BG f 32.025 7.5053   4 3.7526 0.2344 22.5, 39.1 0.31
LIP_BG m 23.7 0.0   1   0.0 0.0 23.7, 23.7 -0.4
LIV_DA f 39.1 0.0   1   0.0 0.0 39.1, 39.1 0.86
LIV_DA m 47.05 5.3033   2   3.75 0.1127 43.3, 50.8 1.35
LOD_AE f 20.233 3.5275   3 2.0366 0.1743 18.0, 24.3 -0.6
LOM_BG m 21.333 4.6544   3 2.6872 0.2182 16.8, 26.1 -0.58
LOT_FC f 48.9 2.9441   6 1.2019 0.0602 46.4, 54.3 1.63
LOX_GF m 5.9833 0.5208   3 0.30068 0.087 5.48, 6.52 -1.74
LUF_AD m 10.49 2.2952   5 1.0264 0.2188 8.19, 14.2 -1.4
LUG_EH m 20.833 2.3007   3 1.3283 0.1104 18.5, 23.1 -0.62
LUS_AH f 45.333 0.72342   3 0.41767 0.016 44.5, 45.8 1.35
LUV_DG m 33.125 2.5264   4 1.2632 0.0763 31.2, 36.8 0.3
LUZ_FH f 36.425 12.123   4 6.0613 0.3328 22.3, 50.5 0.66
LUZ_FH m 29.9 0.0   1   0.0 0.0 29.9, 29.9 0.06
MERCURI_HF m 30.967 1.6166   3 0.93333 0.0522 29.1, 31.9 0.14
NOD/ShiLtJ f 8.115 0.8556   2   0.605 0.1054 7.51, 8.72 -1.55
NOD/ShiLtJ m 6.45 0.21213   2   0.15 0.0329 6.3, 6.6 -1.7
NZO/HlLtJ f 20.1 2.4042   2   1.7 0.1196 18.4, 21.8 -0.62
NZO/HlLtJ m 24.25 1.7678   2   1.25 0.0729 23.0, 25.5 -0.36
PAT_CD m 25.2 0.43589   3 0.25166 0.0173 24.9, 25.7 -0.29
PEF_EC f 25.433 2.0008   3 1.1552 0.0787 23.4, 27.4 -0.2
PEF_EC m 28.633 6.1825   3 3.5695 0.2159 23.8, 35.6 -0.03
POH_DC f 16.2 1.6093   3 0.92916 0.0993 14.5, 17.7 -0.92
PWK/PhJ f 11.35 0.21213   2   0.15 0.0187 11.2, 11.5 -1.3
PWK/PhJ m 12.03 3.4931   2   2.47 0.2904 9.56, 14.5 -1.28
SEH_AH f 29.1 0.0   1   0.0 0.0 29.1, 29.1 0.09
SEH_AH m 23.0 5.7405   4 2.8702 0.2496 14.5, 26.8 -0.46
STUCKY_HF f 33.567 1.4048   3 0.81104 0.0418 32.1, 34.9 0.43
STUCKY_HF m 31.9 0.0   1   0.0 0.0 31.9, 31.9 0.21
VIT_ED f 16.033 2.8572   3 1.6496 0.1782 13.3, 19.0 -0.93
VUX2_HF m 36.933 13.366   3 7.7167 0.3619 21.5, 44.7 0.59
WAD f 25.567 1.8717   3 1.0806 0.0732 24.2, 27.7 -0.19
WSB/EiJ f 16.35 4.4548   2   3.15 0.2725 13.2, 19.5 -0.91
WSB/EiJ m 14.5 2.2627   2   1.6 0.1561 12.9, 16.1 -1.1
XAD8_BG f 36.9 0.0   1   0.0 0.0 36.9, 36.9 0.69
XAD8_BG m 43.7 3.005   3 1.7349 0.0688 40.8, 46.8 1.1
XAH3_GH m 13.0 2.2869   3 1.3204 0.1759 11.3, 15.6 -1.21
XAS4_AF m 59.03 4.2572   3 2.4579 0.0721 56.0, 63.9 2.25
XAV_AH m 43.833 0.63509   3 0.36667 0.0145 43.1, 44.2 1.11
XAW2_CD m 34.9 1.1314   2   0.8 0.0324 34.1, 35.7 0.44
XEB2_AG f 40.0 2.3643   3 1.365 0.0591 37.8, 42.5 0.93
XEB2_AG m 49.033 0.25166   3 0.1453 0.0051 48.8, 49.3 1.5
XEB_AF f 40.7 7.6368   2   5.4 0.1876 35.3, 46.1 0.99
XEB_AF m 27.1 0.0   1   0.0 0.0 27.1, 27.1 -0.15
XEQ_EH m 40.833 3.4775   3 2.0078 0.0852 36.9, 43.5 0.88
XXEN2_DC m 19.0 3.9038   3 2.2539 0.2055 15.0, 22.8 -0.76
XXEN3_DC f 15.1 0.0   1   0.0 0.0 15.1, 15.1 -1.0
XXEN3_DC m 26.3 0.0   1   0.0 0.0 26.3, 26.3 -0.21
YOX_DE m 33.033 1.8009   3 1.0398 0.0545 31.8, 35.1 0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 20.7 4.8459 30.5279 10.8721
129S1/SvImJ m 19.65 4.8459 29.4779 9.8221
A/J f 17.7 4.8459 27.5279 7.8721
A/J m 14.3 4.8459 24.1279 4.4721
CAST/EiJ f 7.905 4.8459 17.7329 -1.9229
CAST/EiJ m 6.985 4.8459 16.8129 -2.8429
CC012/Geni f 27.0 3.9566 35.0244 18.9756
CC012/Geni m 29.84 3.0648 36.0557 23.6243
DONNELL_HA f 41.25 4.8459 51.0779 31.4221
DONNELL_HA m 44.8667 3.9566 52.8911 36.8423
LAT_HD f 45.42 3.0648 51.6357 39.2043
LAT_HD m 41.65 4.8459 51.4779 31.8221
NOD/ShiLtJ f 8.115 4.8459 17.9429 -1.7129
NOD/ShiLtJ m 6.45 4.8459 16.2779 -3.3779
NZO/HlLtJ f 20.1 4.8459 29.9279 10.2721
NZO/HlLtJ m 24.25 4.8459 34.0779 14.4221
PEF_EC f 25.4333 3.9566 33.4577 17.4089
PEF_EC m 28.6333 3.9566 36.6577 20.6089
PWK/PhJ f 11.35 4.8459 21.1779 1.5221
PWK/PhJ m 12.03 4.8459 21.8579 2.2021
WSB/EiJ f 16.35 4.8459 26.1779 6.5221
WSB/EiJ m 14.5 4.8459 24.3279 4.6721
XEB2_AG f 40.0 3.9566 48.0244 31.9756
XEB2_AG m 49.0333 3.9566 57.0577 41.0089


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.175 3.4265 27.1243 13.2257
A/J both 16.0 3.4265 22.9493 9.0507
CAST/EiJ both 7.445 3.4265 14.3943 0.4957
CC012/Geni both 28.42 2.5024 33.4951 23.3449
DONNELL_HA both 43.0583 3.128 49.4022 36.7145
LAT_HD both 43.535 2.8668 49.3492 37.7208
NOD/ShiLtJ both 7.2825 3.4265 14.2318 0.3332
NZO/HlLtJ both 22.175 3.4265 29.1243 15.2257
PEF_EC both 27.0333 2.7978 32.7074 21.3592
PWK/PhJ both 11.69 3.4265 18.6393 4.7407
WSB/EiJ both 15.425 3.4265 22.3743 8.4757
XEB2_AG both 44.5167 2.7978 50.1908 38.8426




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA