Project measure / variable:   Lesage1   NK_cells_of_tot

ID, description, units MPD:63503   NK_cells_of_tot   percentage of splenic lymphocytes that are NK cells (CD49+ CD19-)   [%]  
Data set, strains Lesage1   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic lymphocytes that are NK cells (CD49+ CD19-)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means2.1815   % 2.5549   %
Median of the strain means1.687   % 2.1605   %
SD of the strain means± 1.3909 ± 1.5074
Coefficient of variation (CV)0.6376 0.59
Min–max range of strain means0.535   –   6.666   % 0.88333   –   7.4473   %
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0854 0.0854 0.608 0.4406
strain 11 98.051 8.9137 63.4931 < 0.0001
sex:strain 11 1.1737 0.1067 0.7601 0.6756
Residuals 36 5.054 0.1404


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0555 0.52962   2   0.3745 0.5018 0.681, 1.43 -0.81
129S1/SvImJ m 1.5695 0.32315   2   0.2285 0.2059 1.341, 1.798 -0.65
A/J f 1.1775 0.06152   2   0.0435 0.0522 1.134, 1.221 -0.72
A/J m 1.1655 0.03748   2   0.0265 0.0322 1.139, 1.192 -0.92
C57BL/6J f 2.1968 0.52704   4 0.26352 0.2399 1.587, 2.721 0.01
C57BL/6J m 2.225 0.0   1   0.0 0.0 2.225, 2.225 -0.22
CAST/EiJ f 0.563 0.25032   2   0.177 0.4446 0.386, 0.74 -1.16
CAST/EiJ m 0.9555 0.07707   2   0.0545 0.0807 0.901, 1.01 -1.06
CC008/Geni m 2.1665 0.02333   2   0.0165 0.0108 2.15, 2.183 -0.26
CC010/Geni f 6.666 0.16122   2   0.114 0.0242 6.552, 6.78 3.22
CC010/Geni m 4.499 0.0   1   0.0 0.0 4.499, 4.499 1.29
CC012/Geni f 1.8907 0.69298   3 0.40009 0.3665 1.095, 2.362 -0.21
CC012/Geni m 1.3496 0.12644   5 0.05654 0.0937 1.232, 1.552 -0.8
CC013/Geni m 6.2887 1.351   3 0.78 0.2148 4.938, 7.64 2.48
CC016/Geni m 7.4473 0.32214   3 0.18599 0.0433 7.235, 7.818 3.25
CC020/Geni f 1.091 0.0   1   0.0 0.0 1.091, 1.091 -0.78
CC020/Geni m 1.1785 0.15768   2   0.1115 0.1338 1.067, 1.29 -0.91
CC023/Geni m 3.0603 0.35194   3 0.20319 0.115 2.789, 3.458 0.34
CC024/Geni f 5.049 1.1003   2   0.778 0.2179 4.271, 5.827 2.06
CC024/Geni m 6.626 0.0   1   0.0 0.0 6.626, 6.626 2.7
CC025/Geni f 0.825 0.17596   3 0.10159 0.2133 0.625, 0.956 -0.98
CC026/Geni m 4.023 0.30239   3 0.17459 0.0752 3.703, 4.304 0.97
CC027/Geni f 2.536 0.0   1   0.0 0.0 2.536, 2.536 0.25
CC027/Geni m 2.9135 1.1052   2   0.7815 0.3793 2.132, 3.695 0.24
CC030/Geni f 0.765 0.00424264   2   0.003 0.0055 0.762, 0.768 -1.02
CC031/Geni f 4.854 0.0   1   0.0 0.0 4.854, 4.854 1.92
CC031/Geni m 4.924 0.33375   2   0.236 0.0678 4.688, 5.16 1.57
CC032/Geni m 2.6273 0.21277   3 0.12284 0.081 2.447, 2.862 0.05
CC033/Geni f 3.7103 0.36709   3 0.21194 0.0989 3.328, 4.06 1.1
CC038/Geni f 1.189 0.04667   2   0.033 0.0393 1.156, 1.222 -0.71
CC038/Geni m 1.433 0.0   1   0.0 0.0 1.433, 1.433 -0.74
CC042/Geni m 3.161 0.28567   3 0.16493 0.0904 2.854, 3.419 0.4
CC043/Geni m 2.4687 0.22121   3 0.12771 0.0896 2.265, 2.704 -0.06
CC056/Geni f 1.473 0.0   1   0.0 0.0 1.473, 1.473 -0.51
CC056/Geni m 1.62 0.12869   2   0.091 0.0794 1.529, 1.711 -0.62
CC061/Geni m 1.2107 0.12801   3 0.0739 0.1057 1.082, 1.338 -0.89
CIV2_FE f 2.1877 0.68688   3 0.39657 0.314 1.612, 2.948 0.0
DET3_GA m 1.9523 0.33928   3 0.19588 0.1738 1.638, 2.312 -0.4
DONNELL_HA f 1.8955 0.52397   2   0.3705 0.2764 1.525, 2.266 -0.21
DONNELL_HA m 2.0887 0.56686   3 0.32728 0.2714 1.554, 2.683 -0.31
FIV_AC m 2.0728 0.28707   4 0.14354 0.1385 1.694, 2.328 -0.32
FUF_HE f 0.535 0.10189   3 0.05882 0.1904 0.419, 0.61 -1.18
GALASUPREME_CE m 1.0703 0.09413   3 0.05435 0.0879 1.014, 1.179 -0.98
GIT_GC f 3.021 0.0   1   0.0 0.0 3.021, 3.021 0.6
GIT_GC m 3.286 0.40022   2   0.283 0.1218 3.003, 3.569 0.48
HAX2_EF f 1.6367 0.0841   3 0.04855 0.0514 1.54, 1.693 -0.39
HAZ_FE f 2.8 0.0   1   0.0 0.0 2.8, 2.8 0.44
HAZ_FE m 2.0285 0.82378   2   0.5825 0.4061 1.446, 2.611 -0.35
HIP_GA f 0.834 0.0   1   0.0 0.0 0.834, 0.834 -0.97
HIP_GA m 0.909 0.10324   2   0.073 0.1136 0.836, 0.982 -1.09
HOE_GC f 0.95 0.0   1   0.0 0.0 0.95, 0.95 -0.89
HOE_GC m 1.388 0.25597   2   0.181 0.1844 1.207, 1.569 -0.77
JUD_EF m 3.0875 0.92338   4 0.46169 0.2991 2.485, 4.451 0.35
KAV_AF f 3.672 0.26587   2   0.188 0.0724 3.484, 3.86 1.07
KAV_AF m 3.916 0.0   1   0.0 0.0 3.916, 3.916 0.9
LAM_DC f 3.143 0.0   1   0.0 0.0 3.143, 3.143 0.69
LAM_DC m 3.509 0.20789   2   0.147 0.0592 3.362, 3.656 0.63
LAT_HD f 1.0404 0.36821   5 0.16467 0.3539 0.608, 1.518 -0.82
LAT_HD m 1.0715 0.08132   2   0.0575 0.0759 1.014, 1.129 -0.98
LAX_FC f 1.687 0.0   1   0.0 0.0 1.687, 1.687 -0.36
LAX_FC m 1.542 0.0   1   0.0 0.0 1.542, 1.542 -0.67
LEL_FH m 2.23 0.37335   2   0.264 0.1674 1.966, 2.494 -0.22
LIP_BG f 1.3542 0.18124   4 0.09062 0.1338 1.093, 1.512 -0.59
LIP_BG m 1.74 0.0   1   0.0 0.0 1.74, 1.74 -0.54
LIV_DA f 1.418 0.0   1   0.0 0.0 1.418, 1.418 -0.55
LIV_DA m 1.837 0.20789   2   0.147 0.1132 1.69, 1.984 -0.48
LOD_AE f 2.73 0.23756   3 0.13715 0.087 2.549, 2.999 0.39
LOM_BG m 2.183 0.27021   3 0.156 0.1238 2.025, 2.495 -0.25
LOT_FC f 1.3463 0.34645   6 0.14144 0.2573 0.973, 1.987 -0.6
LOX_GF m 4.6973 0.34563   3 0.19955 0.0736 4.482, 5.096 1.42
LUF_AD m 5.1334 0.549   5 0.24552 0.1069 4.571, 5.796 1.71
LUG_EH m 1.1557 0.039   3 0.02252 0.0338 1.111, 1.183 -0.93
LUS_AH f 1.655 0.0985   3 0.05687 0.0595 1.578, 1.766 -0.38
LUV_DG m 2.7863 0.38299   4 0.19149 0.1375 2.236, 3.099 0.15
LUZ_FH f 1.333 0.35948   4 0.17974 0.2697 0.929, 1.782 -0.61
LUZ_FH m 0.931 0.0   1   0.0 0.0 0.931, 0.931 -1.08
MERCURI_HF m 3.433 0.20843   3 0.12034 0.0607 3.259, 3.664 0.58
NOD/ShiLtJ f 2.1205 1.0387   2   0.7345 0.4899 1.386, 2.855 -0.04
NOD/ShiLtJ m 2.1545 0.38962   2   0.2755 0.1808 1.879, 2.43 -0.27
NZO/HlLtJ f 5.95 0.35638   2   0.252 0.0599 5.698, 6.202 2.71
NZO/HlLtJ m 6.2475 0.169   2   0.1195 0.0271 6.128, 6.367 2.45
PAT_CD m 2.9413 0.16951   3 0.09787 0.0576 2.797, 3.128 0.26
PEF_EC f 1.09 0.12046   3 0.06955 0.1105 0.959, 1.196 -0.78
PEF_EC m 1.0573 0.19729   3 0.1139 0.1866 0.871, 1.264 -0.99
POH_DC f 1.917 0.12968   3 0.07487 0.0676 1.801, 2.057 -0.19
PWK/PhJ f 1.244 0.08061   2   0.057 0.0648 1.187, 1.301 -0.67
PWK/PhJ m 1.2155 0.15203   2   0.1075 0.1251 1.108, 1.323 -0.89
SEH_AH f 2.375 0.0   1   0.0 0.0 2.375, 2.375 0.14
SEH_AH m 2.303 0.56662   4 0.28331 0.246 1.785, 3.081 -0.17
STUCKY_HF f 1.0667 0.0597   3 0.03447 0.056 1.01, 1.129 -0.8
STUCKY_HF m 1.04 0.0   1   0.0 0.0 1.04, 1.04 -1.0
VIT_ED f 1.1957 0.24516   3 0.14155 0.205 1.001, 1.471 -0.71
VUX2_HF m 1.9627 1.3256   3 0.76532 0.6754 0.983, 3.471 -0.39
WAD f 3.3017 0.44072   3 0.25445 0.1335 2.971, 3.802 0.81
WSB/EiJ f 1.594 0.41578   2   0.294 0.2608 1.3, 1.888 -0.42
WSB/EiJ m 1.33 0.08202   2   0.058 0.0617 1.272, 1.388 -0.81
XAD8_BG f 3.55 0.0   1   0.0 0.0 3.55, 3.55 0.98
XAD8_BG m 3.6953 0.15765   3 0.09102 0.0427 3.569, 3.872 0.76
XAH3_GH m 3.222 0.1398   3 0.08071 0.0434 3.065, 3.333 0.44
XAS4_AF m 3.5553 0.57793   3 0.33367 0.1626 3.031, 4.175 0.66
XAV_AH m 1.322 0.03279   3 0.01893 0.0248 1.287, 1.352 -0.82
XAW2_CD m 1.767 0.25456   2   0.18 0.1441 1.587, 1.947 -0.52
XEB2_AG f 2.9113 0.29585   3 0.17081 0.1016 2.719, 3.252 0.52
XEB2_AG m 2.912 0.33713   3 0.19464 0.1158 2.629, 3.285 0.24
XEB_AF f 2.61 0.32951   2   0.233 0.1262 2.377, 2.843 0.31
XEB_AF m 1.748 0.0   1   0.0 0.0 1.748, 1.748 -0.54
XEQ_EH m 0.88333 0.09667   3 0.05581 0.1094 0.772, 0.946 -1.11
XXEN2_DC m 2.5327 0.56621   3 0.3269 0.2236 1.879, 2.871 -0.01
XXEN3_DC f 3.322 0.0   1   0.0 0.0 3.322, 3.322 0.82
XXEN3_DC m 1.893 0.0   1   0.0 0.0 1.893, 1.893 -0.44
YOX_DE m 2.7707 0.50505   3 0.29159 0.1823 2.29, 3.297 0.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0555 0.2649 1.5928 0.5182
129S1/SvImJ m 1.5695 0.2649 2.1068 1.0322
A/J f 1.1775 0.2649 1.7148 0.6402
A/J m 1.1655 0.2649 1.7028 0.6282
CAST/EiJ f 0.563 0.2649 1.1003 0.0257
CAST/EiJ m 0.9555 0.2649 1.4928 0.4182
CC012/Geni f 1.8907 0.2163 2.3294 1.4519
CC012/Geni m 1.3496 0.1676 1.6894 1.0098
DONNELL_HA f 1.8955 0.2649 2.4328 1.3582
DONNELL_HA m 2.0887 0.2163 2.5274 1.6499
LAT_HD f 1.0404 0.1676 1.3802 0.7006
LAT_HD m 1.0715 0.2649 1.6088 0.5342
NOD/ShiLtJ f 2.1205 0.2649 2.6578 1.5832
NOD/ShiLtJ m 2.1545 0.2649 2.6918 1.6172
NZO/HlLtJ f 5.95 0.2649 6.4873 5.4127
NZO/HlLtJ m 6.2475 0.2649 6.7848 5.7102
PEF_EC f 1.09 0.2163 1.5287 0.6513
PEF_EC m 1.0573 0.2163 1.4961 0.6186
PWK/PhJ f 1.244 0.2649 1.7813 0.7067
PWK/PhJ m 1.2155 0.2649 1.7528 0.6782
WSB/EiJ f 1.594 0.2649 2.1313 1.0567
WSB/EiJ m 1.33 0.2649 1.8673 0.7927
XEB2_AG f 2.9113 0.2163 3.3501 2.4726
XEB2_AG m 2.912 0.2163 3.3507 2.4733


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.3125 0.1873 1.6924 0.9326
A/J both 1.1715 0.1873 1.5514 0.7916
CAST/EiJ both 0.7593 0.1873 1.1392 0.3793
CC012/Geni both 1.6201 0.1368 1.8976 1.3427
DONNELL_HA both 1.9921 0.171 2.3389 1.6452
LAT_HD both 1.0559 0.1567 1.3738 0.7381
NOD/ShiLtJ both 2.1375 0.1873 2.5174 1.7576
NZO/HlLtJ both 6.0987 0.1873 6.4787 5.7188
PEF_EC both 1.0737 0.153 1.3839 0.7634
PWK/PhJ both 1.2298 0.1873 1.6097 0.8498
WSB/EiJ both 1.462 0.1873 1.8419 1.0821
XEB2_AG both 2.9117 0.153 3.2219 2.6014




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA