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Project measure / variable:   Bolivar1   LF_time_pct_d2

ID, description, units MPD:63453   LF_time_pct_d2   percentage of time spent in left-front of arena, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in left-front of arena, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means12.062   % 11.029   %
Median of the strain means11.707   % 10.8   %
SD of the strain means± 3.1338 ± 2.6198
Coefficient of variation (CV)0.2598 0.2375
Min–max range of strain means7.8056   –   17.006   % 5.7306   –   14.589   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 63.9978 63.9978 0.9073 0.3419
strain 9 805.9899 89.5544 1.2696 0.2547
sex:strain 9 995.8787 110.6532 1.5687 0.1259
Residuals 220 15518.005 70.5364


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.833 7.402   12 2.1368 0.6255 -0.07
129S1/SvImJ m 10.725 10.938   12 3.1575 1.0199 -0.12
A/J f 17.006 13.852   12 3.9987 0.8146 5.366666667, 51.5 1.58
A/J m 9.2361 7.3124   12 2.1109 0.7917 -0.68
B6129SF1/J f 8.4 6.6553   12 1.9212 0.7923 1.533333333, 25.66666667 -1.17
B6129SF1/J m 12.65 4.6405   12 1.3396 0.3668 3.366666667, 19.0 0.62
B6C3F1/J f 13.436 6.7626   12 1.9522 0.5033 7.466666667, 27.33333333 0.44
B6C3F1/J m 13.144 4.9941   12 1.4417 0.3799 7.966666667, 23.3 0.81
BALB/cByJ f 15.133 18.426   12 5.319 1.2175 4.433333333, 71.96666667 0.98
BALB/cByJ m 10.875 4.4978   12 1.2984 0.4136 6.233333333, 19.66666667 -0.06
C3H/HeJ f 15.394 12.331   12 3.5596 0.801 4.8, 45.73333333 1.06
C3H/HeJ m 13.767 9.313   12 2.6884 0.6765 6.7, 40.8 1.04
C57BL/6J f 7.8056 2.8948   12 0.83566 0.3709 4.066666667, 14.53333333 -1.36
C57BL/6J m 14.589 11.193   12 3.2312 0.7672 5.333333333, 45.43333333 1.36
CBA/J f 10.836 4.5081   12 1.3014 0.416 2.933333333, 21.03333333 -0.39
CBA/J m 5.7306 2.1149   12 0.61052 0.3691 2.133333333, 9.0 -2.02
DBA/2J f 11.581 3.1472   12 0.90852 0.2718 6.833333333, 17.1 -0.15
DBA/2J m 9.6917 6.7891   12 1.9598 0.7005 -0.51
FVB/NJ f 9.1972 5.9355   12 1.7134 0.6454 2.733333333, 20.93333333 -0.91
FVB/NJ m 9.8861 2.4995   12 0.72155 0.2528 5.3, 13.03333333 -0.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.8333 2.4245 16.6115 7.0552
129S1/SvImJ m 10.725 2.4245 15.5031 5.9469
A/J f 17.0056 2.4245 21.7837 12.2274
A/J m 9.2361 2.4245 14.0143 4.458
B6129SF1/J f 8.4 2.4245 13.1781 3.6219
B6129SF1/J m 12.65 2.4245 17.4281 7.8719
B6C3F1/J f 13.4361 2.4245 18.2143 8.658
B6C3F1/J m 13.1444 2.4245 17.9226 8.3663
BALB/cByJ f 15.1333 2.4245 19.9115 10.3552
BALB/cByJ m 10.875 2.4245 15.6531 6.0969
C3H/HeJ f 15.3944 2.4245 20.1726 10.6163
C3H/HeJ m 13.7667 2.4245 18.5448 8.9885
C57BL/6J f 7.8056 2.4245 12.5837 3.0274
C57BL/6J m 14.5889 2.4245 19.367 9.8107
CBA/J f 10.8361 2.4245 15.6143 6.058
CBA/J m 5.7306 2.4245 10.5087 0.9524
DBA/2J f 11.5806 2.4245 16.3587 6.8024
DBA/2J m 9.6917 2.4245 14.4698 4.9135
FVB/NJ f 9.1972 2.4245 13.9754 4.4191
FVB/NJ m 9.8861 2.4245 14.6643 5.108


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.2792 1.7144 14.6578 7.9005
A/J both 13.1208 1.7144 16.4995 9.7422
B6129SF1/J both 10.525 1.7144 13.9037 7.1463
B6C3F1/J both 13.2903 1.7144 16.6689 9.9116
BALB/cByJ both 13.0042 1.7144 16.3828 9.6255
C3H/HeJ both 14.5806 1.7144 17.9592 11.2019
C57BL/6J both 11.1972 1.7144 14.5759 7.8186
CBA/J both 8.2833 1.7144 11.662 4.9047
DBA/2J both 10.6361 1.7144 14.0148 7.2574
FVB/NJ both 9.5417 1.7144 12.9203 6.163




  GWAS USING LINEAR MIXED MODELS