Project measure / variable:   Bolivar1   c_revs_d2

ID, description, units MPD:63432   c_revs_d2   number of clockwise revolution episodes, 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of clockwise revolution episodes, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means4.05   n 4.3417   n
Median of the strain means4.0833   n 4.5417   n
SD of the strain means± 1.0601 ± 1.4837
Coefficient of variation (CV)0.2617 0.3417
Min–max range of strain means2.0   –   5.75   n 2.3333   –   6.6667   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.1042 5.1042 0.7757 0.3794
strain 9 167.5875 18.6208 2.8299 0.0036
sex:strain 9 191.5208 21.2801 3.2341 0.001
Residuals 220 1447.5833 6.5799


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.8333 2.9797   12 0.86017 0.6165 1.0, 9.0 0.74
129S1/SvImJ m 2.3333 2.6054   12 0.7521 1.1166 -1.35
A/J f 2.0 1.5374   12 0.44381 0.7687 -1.93
A/J m 2.6667 2.2697   12 0.6552 0.8511 -1.13
B6129SF1/J f 3.1667 2.5166   12 0.72648 0.7947 1.0, 8.0 -0.83
B6129SF1/J m 4.6667 2.5346   12 0.73168 0.5431 2.0, 10.0 0.22
B6C3F1/J f 4.5 3.5291   12 1.0188 0.7842 1.0, 13.0 0.42
B6C3F1/J m 5.25 2.7675   12 0.79891 0.5271 1.0, 10.0 0.61
BALB/cByJ f 4.4167 2.7122   12 0.78295 0.6141 1.0, 11.0 0.35
BALB/cByJ m 6.6667 3.3934   12 0.97959 0.509 1.0, 13.0 1.57
C3H/HeJ f 3.6667 1.6697   12 0.482 0.4554 2.0, 7.0 -0.36
C3H/HeJ m 4.4167 2.7122   12 0.78295 0.6141 0.05
C57BL/6J f 4.9167 1.9287   12 0.55675 0.3923 3.0, 9.0 0.82
C57BL/6J m 4.75 2.4909   12 0.71906 0.5244 1.0, 10.0 0.28
CBA/J f 3.75 2.3012   12 0.6643 0.6136 1.0, 8.0 -0.28
CBA/J m 4.25 2.3404   12 0.6756 0.5507 1.0, 8.0 -0.06
DBA/2J f 5.75 3.1079   12 0.89718 0.5405 1.0, 10.0 1.6
DBA/2J m 2.4167 1.9752   12 0.5702 0.8173 -1.3
FVB/NJ f 3.5 1.3817   12 0.39886 0.3948 1.0, 5.0 -0.52
FVB/NJ m 6.0 3.2193   12 0.92932 0.5365 1.0, 11.0 1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.8333 0.7405 6.2927 3.374
129S1/SvImJ m 2.3333 0.7405 3.7927 0.874
A/J f 2.0 0.7405 3.4594 0.5406
A/J m 2.6667 0.7405 4.126 1.2073
B6129SF1/J f 3.1667 0.7405 4.626 1.7073
B6129SF1/J m 4.6667 0.7405 6.126 3.2073
B6C3F1/J f 4.5 0.7405 5.9594 3.0406
B6C3F1/J m 5.25 0.7405 6.7094 3.7906
BALB/cByJ f 4.4167 0.7405 5.876 2.9573
BALB/cByJ m 6.6667 0.7405 8.126 5.2073
C3H/HeJ f 3.6667 0.7405 5.126 2.2073
C3H/HeJ m 4.4167 0.7405 5.876 2.9573
C57BL/6J f 4.9167 0.7405 6.376 3.4573
C57BL/6J m 4.75 0.7405 6.2094 3.2906
CBA/J f 3.75 0.7405 5.2094 2.2906
CBA/J m 4.25 0.7405 5.7094 2.7906
DBA/2J f 5.75 0.7405 7.2094 4.2906
DBA/2J m 2.4167 0.7405 3.876 0.9573
FVB/NJ f 3.5 0.7405 4.9594 2.0406
FVB/NJ m 6.0 0.7405 7.4594 4.5406


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.5833 0.5236 4.6153 2.5514
A/J both 2.3333 0.5236 3.3653 1.3014
B6129SF1/J both 3.9167 0.5236 4.9486 2.8847
B6C3F1/J both 4.875 0.5236 5.9069 3.8431
BALB/cByJ both 5.5417 0.5236 6.5736 4.5097
C3H/HeJ both 4.0417 0.5236 5.0736 3.0097
C57BL/6J both 4.8333 0.5236 5.8653 3.8014
CBA/J both 4.0 0.5236 5.0319 2.9681
DBA/2J both 4.0833 0.5236 5.1153 3.0514
FVB/NJ both 4.75 0.5236 5.7819 3.7181




  GWAS USING LINEAR MIXED MODELS