Project measure / variable:   Bolivar1   move_time_pct_d2

ID, description, units MPD:63408   move_time_pct_d2   percentage of time spent moving, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent moving, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means33.65   % 35.813   %
Median of the strain means33.404   % 38.018   %
SD of the strain means± 3.8965 ± 8.8257
Coefficient of variation (CV)0.1158 0.2464
Min–max range of strain means29.175   –   40.083   % 22.486   –   51.57   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 280.8007 280.8007 3.3819 0.0673
strain 9 4666.9747 518.5527 6.2454 < 0.0001
sex:strain 9 5386.9632 598.5515 7.2089 < 0.0001
Residuals 220 18266.4985 83.0295


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 35.714 14.116   12 4.0751 0.3953 9.033333333, 59.73333333 0.53
129S1/SvImJ m 22.486 11.314   12 3.266 0.5031 3.8, 43.46666667 -1.51
A/J f 29.175 9.0866   12 2.6231 0.3115 12.3, 43.36666667 -1.15
A/J m 26.233 8.9083   12 2.5716 0.3396 9.133333333, 37.8 -1.09
B6129SF1/J f 29.839 11.958   12 3.452 0.4008 13.03333333, 52.16666667 -0.98
B6129SF1/J m 39.822 10.989   12 3.1721 0.2759 22.46666667, 56.83333333 0.45
B6C3F1/J f 40.083 10.266   12 2.9634 0.2561 24.83333333, 59.26666667 1.65
B6C3F1/J m 41.703 8.3973   12 2.4241 0.2014 27.2, 54.26666667 0.67
BALB/cByJ f 34.411 10.891   12 3.1439 0.3165 9.7, 46.4 0.2
BALB/cByJ m 51.57 6.9264   12 1.9995 0.1343 40.9, 62.9 1.79
C3H/HeJ f 32.597 4.9878   12 1.4398 0.153 25.26666667, 42.6 -0.27
C3H/HeJ m 38.547 7.2335   12 2.0881 0.1877 24.46666667, 48.0 0.31
C57BL/6J f 34.211 7.9582   12 2.2973 0.2326 20.63333333, 53.43333333 0.14
C57BL/6J m 34.961 7.0911   12 2.047 0.2028 27.5, 50.6 -0.1
CBA/J f 29.978 6.8297   12 1.9716 0.2278 15.1, 38.53333333 -0.94
CBA/J m 37.489 6.3444   12 1.8315 0.1692 24.73333333, 48.43333333 0.19
DBA/2J f 39.481 4.288   12 1.2378 0.1086 31.83333333, 47.43333333 1.5
DBA/2J m 25.528 12.973   12 3.7451 0.5082 3.6, 46.46666667 -1.17
FVB/NJ f 31.011 7.39   12 2.1333 0.2383 13.0, 39.9 -0.68
FVB/NJ m 39.789 6.7931   12 1.961 0.1707 30.26666667, 50.76666667 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 35.7139 2.6304 40.8979 30.5298
129S1/SvImJ m 22.4861 2.6304 27.6702 17.3021
A/J f 29.175 2.6304 34.3591 23.9909
A/J m 26.2333 2.6304 31.4174 21.0493
B6129SF1/J f 29.8389 2.6304 35.0229 24.6548
B6129SF1/J m 39.8222 2.6304 45.0063 34.6382
B6C3F1/J f 40.0833 2.6304 45.2674 34.8993
B6C3F1/J m 41.7028 2.6304 46.8868 36.5187
BALB/cByJ f 34.4111 2.6304 39.5952 29.2271
BALB/cByJ m 51.575 2.6304 56.7591 46.3909
C3H/HeJ f 32.5972 2.6304 37.7813 27.4132
C3H/HeJ m 38.5472 2.6304 43.7313 33.3632
C57BL/6J f 34.2111 2.6304 39.3952 29.0271
C57BL/6J m 34.9611 2.6304 40.1452 29.7771
CBA/J f 29.9778 2.6304 35.1618 24.7937
CBA/J m 37.4889 2.6304 42.6729 32.3048
DBA/2J f 39.4806 2.6304 44.6646 34.2965
DBA/2J m 25.5278 2.6304 30.7118 20.3437
FVB/NJ f 31.0111 2.6304 36.1952 25.8271
FVB/NJ m 39.7889 2.6304 44.9729 34.6048


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 29.1 1.86 32.7657 25.4343
A/J both 27.7042 1.86 31.3698 24.0385
B6129SF1/J both 34.8306 1.86 38.4962 31.1649
B6C3F1/J both 40.8931 1.86 44.5587 37.2274
BALB/cByJ both 42.9931 1.86 46.6587 39.3274
C3H/HeJ both 35.5722 1.86 39.2379 31.9065
C57BL/6J both 34.5861 1.86 38.2518 30.9204
CBA/J both 33.7333 1.86 37.399 30.0677
DBA/2J both 32.5042 1.86 36.1698 28.8385
FVB/NJ both 35.4 1.86 39.0657 31.7343




  GWAS USING LINEAR MIXED MODELS