Project measure / variable:   Graham1   Treg_brain_d12

ID, description, units MPD:63338   Treg_brain_d12   percentage of CD4+ T cells that are Foxp3+ in the brain, post infection   [%]  day 12  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD4+ T cells that are Foxp3+ in the brain, post infection day 12



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means10.565   %
Median of the strain means9.4953   %
SD of the strain means± 5.5722
Coefficient of variation (CV)0.5274
Min–max range of strain means4.415   –   19.667   %
Mean sample size per strain2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 3 317.7495 105.9165 3.1719 0.0943
Residuals 7 233.7447 33.3921


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 10.18 4.779   3 2.7592 0.4694 6.02, 15.4 -0.07
RIX:CC(005 x 001) m 4.415 1.888   2   1.335 0.4276 3.08, 5.75 -1.1
RIX:CC(017 x 004) m 9.4953 8.9581   3 5.172 0.9434 0.806, 18.7 -0.19
RIX:CC(024 x 023) m 9.07 0.0   1   0.0 0.0 9.07, 9.07 -0.27
RIX:CC(041 x 012) m 19.667 3.4646   3 2.0003 0.1762 15.7, 22.1 1.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 10.18 3.3363 18.069 2.291
RIX:CC(005 x 001) m 4.415 4.0861 14.077 -5.247
RIX:CC(017 x 004) m 9.4953 3.3363 17.3844 1.6063
RIX:CC(041 x 012) m 19.6667 3.3363 27.5557 11.7776




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA