Project measure / variable:   Graham1   Treg_brain_d7

ID, description, units MPD:63337   Treg_brain_d7   percentage of CD4+ T cells that are Foxp3+ in the brain, post infection   [%]  day 7  
West Nile virus study
Data set, strains Graham1   CC RIX   5 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD4+ T cells that are Foxp3+ in the brain, post infection day 7



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means11.828   %
Median of the strain means9.38   %
SD of the strain means± 5.4457
Coefficient of variation (CV)0.4604
Min–max range of strain means7.0367   –   20.1   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 355.8723 88.9681 1.9275 0.1823
Residuals 10 461.5641 46.1564


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 7.0367 6.5661   3 3.791 0.9331 -0.88
RIX:CC(005 x 001) m 8.0933 3.2613   3 1.8829 0.403 4.78, 11.3 -0.69
RIX:CC(017 x 004) m 9.38 7.8586   3 4.5372 0.8378 2.24, 17.8 -0.45
RIX:CC(024 x 023) m 14.53 7.3106   3 4.2208 0.5031 7.39, 22.0 0.5
RIX:CC(041 x 012) m 20.1 7.8632   3 4.5398 0.3912 11.4, 26.7 1.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 7.0367 3.9224 15.7764 -1.7031
RIX:CC(005 x 001) m 8.0933 3.9224 16.8331 -0.6464
RIX:CC(017 x 004) m 9.38 3.9224 18.1197 0.6403
RIX:CC(024 x 023) m 14.53 3.9224 23.2697 5.7903
RIX:CC(041 x 012) m 20.1 3.9224 28.8397 11.3603




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA