Project measure / variable:   Graham1   CD4_spleen_d28

ID, description, units MPD:63336   CD4_spleen_d28   percentage of CD3+ T cells that are CD4+ in spleen, post infection   [%]  day 28  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in spleen, post infection day 28



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means51.27   %
Median of the strain means51.27   %
SD of the strain means± 4.7588
Coefficient of variation (CV)0.0928
Min–max range of strain means47.9   –   54.63   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 68.0067 68.0067 1.9067 0.2395
Residuals 4 142.6667 35.6667


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 54.63 8.0749   3 4.662 0.1478 47.5, 63.4 0.71
RIX:CC(041 x 012) m 47.9 2.4759   3 1.4295 0.0517 46.0, 50.7 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 54.6333333333 3.4480268109 64.2065904951 45.0600761715
RIX:CC(041 x 012) m 47.9 3.4480268109 57.4732571618 38.3267428382




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA