Project measure / variable:   Graham1   CD4_spleen_d21

ID, description, units MPD:63335   CD4_spleen_d21   percentage of CD3+ T cells that are CD4+ in spleen, post infection   [%]  day 21  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in spleen, post infection day 21



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means47.352   %
Median of the strain means47.352   %
SD of the strain means± 18.835
Coefficient of variation (CV)0.3978
Min–max range of strain means34.033   –   60.67   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 1064.0017 1064.0017 18.3327 0.0128
Residuals 4 232.1533 58.0383


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 60.67 1.7616   3 1.0171 0.029 58.7, 62.1 0.71
RIX:CC(041 x 012) m 34.033 10.629   3 6.1366 0.3123 24.9, 45.7 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 60.6666666667 4.398421434 72.8786423277 48.4546910056
RIX:CC(041 x 012) m 34.0333333333 4.398421434 46.2453089944 21.8213576723




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA