Project measure / variable:   Graham1   CD4_spleen_d12

ID, description, units MPD:63334   CD4_spleen_d12   percentage of CD3+ T cells that are CD4+ in spleen, post infection   [%]  day 12  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in spleen, post infection day 12



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means57.83   %
Median of the strain means57.83   %
SD of the strain means± 14.095
Coefficient of variation (CV)0.2437
Min–max range of strain means47.867   –   67.8   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 596.0067 596.0067 329.893 < 0.0001
Residuals 4 7.2267 1.8067


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 67.8 1.8   3 1.0392 0.0265 66.0, 69.6 0.71
RIX:CC(041 x 012) m 47.867 0.61101   3 0.35277 0.0128 47.2, 48.4 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 67.8 0.7760297818 69.9546040891 65.6453959109
RIX:CC(041 x 012) m 47.8666666667 0.7760297818 50.0212707558 45.7120625775




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA