Project measure / variable:   Graham1   CD4_spleen_d7

ID, description, units MPD:63333   CD4_spleen_d7   percentage of CD3+ T cells that are CD4+ in spleen, post infection   [%]  day 7  
West Nile virus study
Data set, strains Graham1   CC RIX   2 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in spleen, post infection day 7

RIX:CC(004 x 011)RIX:CC(041 x 012) % 253035404550556065femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested2 strains
Mean of the strain means51.78   %
Median of the strain means51.78   %
SD of the strain means± 2.1001
Coefficient of variation (CV)0.0406
Min–max range of strain means50.3   –   53.27   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 1 13.2017 13.2017 0.0419 0.8479
Residuals 4 1261.2867 315.3217


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
RIX:CC(004 x 011) m 53.27 24.999   3 14.433 0.4693 24.4, 67.8 0.71
RIX:CC(041 x 012) m 50.3 2.3812   3 1.3748 0.0473 48.5, 53.0 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 53.2666666667 10.2521813397 81.7312853649 24.8020479684
RIX:CC(041 x 012) m 50.3 10.2521813397 78.7646186982 21.8353813018




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA