Project measure / variable:   Graham1   CD4_brain_d21

ID, description, units MPD:63331   CD4_brain_d21   percentage of CD3+ T cells that are CD4+ in brain, post infection   [%]  day 21  
West Nile virus study
Data set, strains Graham1   CC RIX   4 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Graham1 - percentage of CD3+ T cells that are CD4+ in brain, post infection day 21



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested4 strains
Mean of the strain means27.327   %
Median of the strain means27.602   %
SD of the strain means± 12.068
Coefficient of variation (CV)0.4416
Min–max range of strain means13.338   –   40.767   %
Mean sample size per strain2.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 3 1097.2801 365.76 1.8352 0.2287
Residuals 7 1395.1273 199.3039


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
RIX:CC(004 x 011) m 40.767 13.567   3 7.8329 0.3328 29.2, 55.7 1.11
RIX:CC(005 x 001) m 13.338 17.765   2   12.562 1.3318 0.777, 25.9 -1.16
RIX:CC(017 x 004) m 22.103 17.749   3 10.247 0.803 3.01, 38.1 -0.43
RIX:CC(041 x 012) m 33.1 6.3789   3 3.6828 0.1927 26.4, 39.1 0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
RIX:CC(004 x 011) m 40.7667 8.1507 60.0401 21.4932
RIX:CC(005 x 001) m 13.3385 9.9826 36.9436 -10.2666
RIX:CC(017 x 004) m 22.1033 8.1507 41.3768 2.8299
RIX:CC(041 x 012) m 33.1 8.1507 52.3734 13.8266




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA